Experiment set24IT081 for Pseudomonas putida KT2440

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Soil=PNNL_Prosser_PlotA_B_20191220; Sterility=sterile; Collection=outgrowth_in_LB_2hrs_then_extra_outgrowth_in_LB; SoilTreatment=none; SoilTreatmentTime=144_hrs

200 most important genes:

  gene name fitness t score description  
PP_1623 -7.2 -12.0 RNA polymerase, sigma S (sigma 38) factor compare
PP_3484 -6.1 -6.0 Response regulator receiver protein compare
PP_0164 -5.5 -3.8 conserved protein of unknown function compare
PP_1898 -5.0 -3.4 MotA/TolQ/ExbB proton channel family protein compare
PP_0290 -4.6 -8.3 Imidazole glycerol phosphate synthase subunit HisH compare
PP_0951 -4.4 -10.2 Ribosome hibernation promoting factor compare
PP_1198 -4.1 -4.8 transcriptional regulator, Cro/CI family (higA antitoxin like) compare
PP_5309 -3.6 -6.4 oxidative and nitrosative stress transcriptional dual regulator compare
PP_4902 -3.5 -3.4 Oligoribonuclease compare
PP_5014 -3.4 -3.3 Phosphoribosyl-AMP cyclohydrolase compare
PP_1215 -3.4 -3.4 Crossover junction endodeoxyribonuclease RuvC compare
PP_4364 -3.4 -6.5 putative Anti-sigma F factor antagonist compare
PP_1088 -3.4 -10.4 Argininosuccinate synthase compare
PP_0406 -3.3 -2.3 Nucleotidyltransferase family protein compare
PP_0395 -3.3 -14.3 putative type IV piliation protein compare
PP_1734 -3.2 -5.3 Probable septum site-determining protein MinC compare
PP_5015 -3.1 -4.2 phosphoribosyl-ATP pyrophosphatase (EC 3.6.1.31) (from data) compare
PP_5502 -3.0 -5.1 ribosome modulation factor compare
PP_0914 -3.0 -12.2 GGDEF domain protein compare
PP_0396 -3.0 -12.0 conserved protein of unknown function compare
PP_0184 -3.0 -4.5 Argininosuccinate lyase compare
PP_0397 -3.0 -12.5 protein kinase compare
PP_4396 -2.8 -5.8 conserved protein of unknown function compare
PP_1985 -2.8 -5.7 3-isopropylmalate dehydratase large subunit compare
PP_5185 -2.8 -6.2 acetylglutamate kinase-like protein (regulatory domain)/amino acid N-acetyltransferase compare
PP_4726 -2.8 -4.2 Chaperone protein DnaJ compare
PP_0293 -2.8 -2.1 Imidazole glycerol phosphate synthase subunit HisF compare
PP_0966 -2.6 -8.6 Histidinol dehydrogenase compare
PP_1468 -2.5 -2.5 Tyrosine recombinase XerD compare
PP_4471 -2.5 -6.2 Magnesium transporter compare
PP_3511 -2.5 -9.8 Branched-chain-amino-acid aminotransferase compare
PP_2862 -2.5 -7.6 Undecaprenyl-diphosphatase compare
PP_1733 -2.4 -4.0 membrane ATPase of the MinC-MinD-MinE system compare
PP_4342 -2.4 -3.3 flagellar synthesis regulator, putative ATPase compare
PP_4354 -2.4 -4.6 flagellar export apparatus subunit compare
PP_0967 -2.4 -7.2 histidinol-phosphate aminotransferase (EC 2.6.1.9) (from data) compare
PP_1216 -2.4 -3.7 Holliday junction ATP-dependent DNA helicase RuvA compare
PP_3833 -2.3 -5.3 Response regulator compare
PP_0292 -2.3 -2.9 1-(5-phosphoribosyl)-5-((5-phosphoribosylamino)methylideneamino)imidazole-4-carboxamide isomerase (EC 5.3.1.16) (from data) compare
PP_4394 -2.3 -6.1 flagella basal body P-ring formation protein compare
PP_0965 -2.3 -7.4 ATP phosphoribosyltransferase (EC 2.4.2.17) (from data) compare
PP_4058 -2.3 -9.2 1,4-alpha-glucan branching enzyme compare
PP_0289 -2.2 -5.7 Imidazoleglycerol-phosphate dehydratase compare
PP_4379 -2.1 -3.4 Beta-ketoacyl-acyl-carrier-protein synthase I compare
PP_1763 -2.0 -4.1 putative oxidoreductase compare
PP_4358 -2.0 -7.6 flagellar synthesis, switching and energizing component compare
PP_5289 -2.0 -3.1 Acetylglutamate kinase compare
PP_4369 -2.0 -7.3 Flagellar M-ring protein compare
PP_4143 -2.0 -3.6 conserved protein of unknown function compare
PP_t29 -2.0 -1.6 tRNA-Ala compare
PP_4994 -2.0 -5.3 conserved protein of unknown function compare
PP_4679 -2.0 -5.6 acetohydroxybutanoate synthase / acetolactate synthase compare
PP_1988 -2.0 -6.2 3-isopropylmalate dehydrogenase compare
PP_4814 -2.0 -2.6 ATP-dependent protease La domain protein compare
PP_4680 -2.0 -9.9 acetohydroxybutanoate synthase / acetolactate synthase compare
PP_4696 -2.0 -4.6 Nitrogen regulation protein NR(I) compare
PP_4131 -1.9 -3.2 NADH-quinone oxidoreductase subunit N compare
PP_4368 -1.9 -3.8 flagellar motor switch protein compare
PP_0218 -1.9 -8.5 Sensory box protein compare
PP_5145 -1.9 -13.7 phosphoenolpyruvate-dependent regulator (with NPR and NTR proteins) compare
PP_4353 -1.9 -5.8 Flagellar biosynthetic protein fliR compare
PP_4120 -1.9 -2.2 NADH-quinone oxidoreductase subunit B compare
PP_4943 -1.9 -2.6 putative Glycosyl transferase compare
PP_2414 -1.9 -1.9 conserved exported protein of unknown function compare
PP_2327 -1.9 -4.6 transcriptional dual regulator / CysB-O-acetyl-L-serine compare
PP_1779 -1.9 -7.1 Lipopolysaccharide ABC export system, ATP-binding protein compare
PP_2402 -1.8 -2.5 putative Sensor histidine kinase compare
PP_4362 -1.8 -3.0 conserved protein of unknown function compare
PP_4338 -1.8 -7.4 Chemotaxis histidine kinase CheA compare
PP_4337 -1.8 -5.0 chemotaxis response regulator protein-glutamate methylesterase of group 1 operon compare
PP_1778 -1.8 -4.6 Lipopolysaccharide ABC export system, permease protein compare
PP_4344 -1.8 -9.3 flagellar export pore protein compare
PP_4004 -1.7 -3.6 DNA translocase FtsK compare
PP_1493 -1.7 -2.2 chemotaxis response regulator protein-glutamate methylesterase of group 3 operon compare
PP_4910 -1.7 -3.6 conserved protein of unknown function compare
PP_4890 -1.7 -3.5 ATP phosphoribosyltransferase regulatory subunit compare
PP_1986 -1.7 -3.3 3-isopropylmalate dehydratase small subunit compare
PP_4122 -1.7 -1.6 proton-pumping NADH:ubiquinone oxidoreductase, respiratory complex I, subunit E compare
PP_4937 -1.7 -5.1 toluene tolerance protein compare
PP_0888 -1.7 -2.2 Photosynthetic apparatus regulatory protein RegA compare
PP_4678 -1.6 -9.1 Ketol-acid reductoisomerase compare
PP_4909 -1.6 -5.7 phosphoserine phosphatase compare
PP_4332 -1.6 -5.7 Chemotaxis protein CheW compare
PP_1079 -1.6 -4.2 Ornithine carbamoyltransferase compare
PP_4381 -1.6 -9.0 Flagellar hook-associated protein FlgK compare
PP_4384 -1.6 -7.2 Flagellar L-ring protein compare
PP_4392 -1.6 -6.7 chemotaxis protein methyltransferase compare
PP_2302 -1.6 -5.2 DNA-binding, ATP-dependent protease compare
PP_4352 -1.6 -8.6 flagellin export apparatus, substrate specificity protein compare
PP_1036 -1.6 -7.3 membrane-bound lytic murein transglycosylase F compare
PP_4892 -1.6 -5.0 integral membrane ATP-dependent zinc metallopeptidase / HflK-HflC complex compare
PP_5338 -1.6 -3.1 aspartate ammonia-lyase compare
PP_4378 -1.5 -10.6 flagellin, filament structural protein compare
PP_1055 -1.5 -1.2 Type II secretion pathway protein GspN compare
PP_4380 -1.5 -9.8 Flagellar hook-associated protein FlgL compare
PP_4340 -1.5 -3.8 response regulator for chemotactic signal transduction compare
PP_4341 -1.5 -6.9 RNA polymerase sigma 28 (sigma F) factor for class III flagellar operons compare
PP_1025 -1.5 -9.3 2-isopropylmalate synthase compare
PP_4389 -1.5 -6.3 Flagellar basal-body rod modification protein FlgD compare
PP_4366 -1.5 -8.8 flagellum-specific ATP synthase compare
PP_4066 -1.5 -3.4 methylglutaconyl-CoA hydratase compare
PP_1346 -1.5 -4.2 Glutamate N-acetyltransferase/Amino-acid acetyltransferase compare
PP_3924 -1.5 -3.0 conserved protein of unknown function compare
PP_0872 -1.5 -5.0 Peptide chain release factor 3 compare
PP_4370 -1.5 -5.1 Flagellar hook-basal body complex protein FliE compare
PP_5328 -1.5 -1.9 putative phosphate transport system permease protein compare
PP_2144 -1.5 -3.3 Transcriptional regulator, TetR family compare
PP_4367 -1.5 -4.2 Flagellar assembly protein FliH compare
PP_4880 -1.4 -7.0 exoribonuclease R compare
PP_0127 -1.4 -5.2 Thiol:disulfide interchange protein compare
PP_5095 -1.4 -1.0 pyrroline-5-carboxylate reductase compare
PP_4382 -1.4 -6.7 Peptidoglycan hydrolase FlgJ compare
PP_4376 -1.4 -7.7 flagellar filament capping protein compare
PP_4941 -1.4 -4.8 conserved exported protein of unknown function compare
PP_2378 -1.4 -2.1 Fe/S biogenesis protein NfuA compare
PP_4375 -1.4 -5.8 flagellar chaperone, inhibits premature FliC assembly compare
PP_0957 -1.4 -2.3 D-arabinose 5-phosphate isomerase compare
PP_4388 -1.4 -9.3 Flagellar hook protein FlgE compare
PP_0760 -1.4 -3.1 conserved membrane protein of unknown function compare
PP_4385 -1.4 -3.9 flagellar basal-body rod protein FlgG compare
PP_3760 -1.4 -5.4 putative methyltransferase compare
PP_4129 -1.4 -2.1 NADH:ubiquinone oxidoreductase, membrane subunit L compare
PP_1906 -1.4 -2.5 ribosomal large subunit pseudouridine synthase C compare
PP_1428 -1.4 -1.6 Sigma factor AlgU negative regulatory protein compare
PP_5327 -1.4 -2.4 putative phosphate ABC transporter, permease subunit compare
PP_1224 -1.3 -5.1 periplasmic subunit of the TolQRA transport system compare
PP_5128 -1.3 -5.8 Dihydroxy-acid dehydratase compare
PP_0547 -1.3 -3.8 UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl- meso-diaminopimelate ligase compare
PP_5346 -1.3 -5.5 pyruvate carboxylase subunit B compare
PP_2348 -1.3 -3.7 Sensor histidine kinase compare
PP_1062 -1.3 -3.4 MutT/nudix family protein compare
PP_4121 -1.3 -2.4 NADH-quinone oxidoreductase subunit C/D compare
PP_3821 -1.3 -6.1 UTP-glucose-1-phosphate uridylyltransferase compare
PP_1764 -1.3 -2.2 Phosphoglycolate phosphatase 2 compare
PP_0368 -1.3 -7.9 putative Acyl-CoA dehydrogenase compare
PP_2903 -1.3 -2.0 peptidyl-prolyl cis-trans isomerase B (rotamase B) compare
PP_4124 -1.3 -2.5 NADH-quinone oxidoreductase subunit G compare
PP_5146 -1.3 -4.9 RNA pyrophosphohydrolase compare
PP_1318 -1.3 -4.3 Cytochrome b compare
PP_1317 -1.3 -3.3 Ubiquinol-cytochrome c reductase iron-sulfur subunit compare
PP_5475 -1.3 -1.8 conserved protein of unknown function compare
PP_1097 -1.2 -1.5 Methionine--tRNA ligase compare
PP_4804 -1.2 -1.2 RlpA-like lipoprotein compare
PP_0435 -1.2 -4.9 Peptidase, M23/M37 family compare
PP_4065 -1.2 -4.1 methylcrotonyl-CoA carboxylase biotin-containing subunit beta compare
PP_4262 -1.2 -1.6 Cytochrome oxidase maturation protein, cbb3-type compare
PP_0191 -1.2 -3.6 Transcriptional regulatory protein AlgQ compare
PP_4361 -1.2 -4.3 Flagellar hook-length control protein FliK compare
PP_0832 -1.2 -2.6 S-adenosylmethionine:tRNA ribosyltransferase-isomerase compare
PP_5347 -1.2 -6.0 pyruvate carboxylase subunit A compare
PP_4879 -1.2 -4.0 23S rRNA (guanosine-2'-O-)-methyltransferase RlmB compare
PP_0980 -1.2 -4.0 Probable cytosol aminopeptidase compare
PP_0949 -1.2 -2.9 putative ATP-binding protein UPF0042 compare
PP_1233 -1.2 -3.4 sulfurtransferase compare
PP_2214 -1.2 -2.6 3-hydroxyacyl-CoA dehydrogenase type-2 compare
PP_4008 -1.1 -4.7 ATP-dependent serine protease compare
PP_1994 -1.1 -1.5 tRNA pseudouridine (38-40)synthase compare
PP_4126 -1.1 -0.8 NADH-quinone oxidoreductase subunit I compare
PP_3447 -1.1 -1.4 conserved membrane protein of unknown function compare
PP_4390 -1.1 -5.9 flagellar basal-body rod protein FlgC compare
PP_0123 -1.1 -6.4 DNA polymerase I, 5 compare
PP_4820 -1.1 -5.0 tRNA-dihydrouridine synthase B compare
PP_4391 -1.1 -3.8 flagellar basal-body rod protein FlgB compare
PP_5294 -1.1 -4.4 Ribonuclease PH compare
PP_5528 -1.1 -1.4 conserved protein of unknown function compare
PP_1319 -1.1 -3.5 Ubiquinol--cytochrome c reductase, cytochrome c1 compare
PP_1142 -1.1 -1.1 conserved protein of unknown function compare
PP_2433 -1.1 -2.8 conserved protein of unknown function compare
PP_t11 -1.1 -2.5 tRNA-Lys compare
PP_4343 -1.1 -3.5 Flagellar biosynthesis protein FlhF compare
PP_0630 -1.1 -1.3 DNA gyrase inhibitor YacG compare
PP_3539 -1.1 -1.4 putative Transcriptional regulator compare
PP_4067 -1.1 -5.5 methylcrotonyl-CoA carboxylase biotin-containing subunit alpha compare
PP_4214 -1.1 -2.3 pyoverdine biosynthesis related protein compare
PP_4365 -1.1 -2.9 Flagellar protein FliJ compare
PP_2322 -1.1 -4.5 Major outer membrane lipoprotein compare
PP_4470 -1.0 -3.2 putative transcriptional regulator (Arc domain-containing) compare
PP_4993 -1.0 -3.4 Glutathione synthetase compare
PP_1217 -1.0 -3.3 Holliday junction ATP-dependent DNA helicase RuvB compare
PP_4722 -1.0 -3.2 Transcription elongation factor GreA compare
PP_3770 -1.0 -2.6 conserved protein of unknown function compare
PP_0291 -1.0 -2.4 conserved protein of unknown function compare
PP_4895 -1.0 -1.2 tRNA dimethylallyltransferase compare
PP_4517 -1.0 -1.1 conserved protein of unknown function compare
PP_4738 -1.0 -1.7 conserved exported protein of unknown function compare
PP_3834 -1.0 -3.8 conserved protein of unknown function compare
PP_2379 -1.0 -3.9 putative cytochrome oxidase biogenesis protein compare
PP_2088 -1.0 -1.6 RNA polymerase sigma factor SigX compare
PP_0082 -1.0 -3.1 tryptophan synthase alpha chain compare
PP_1731 -1.0 -2.7 23S rRNA (746) and tRNA (32) pseudouridine synthase compare
PP_0401 -1.0 -1.3 Ribosomal RNA small subunit methyltransferase A compare
PP_4785 -1.0 -4.4 conserved exported protein of unknown function compare
PP_2390 -1.0 -4.3 Transcriptional regulator, LysR family compare
PP_1232 -1.0 -4.1 conserved exported protein of unknown function compare
PP_4891 -1.0 -2.8 integral membrane ATP-dependent zinc metallopeptidase / HflK-HflC complex compare
PP_4940 -1.0 -5.5 Putative glycosyltransferase compare
PP_1366 -0.9 -0.9 Transcriptional regulator MvaT, P16 subunit compare
PP_5232 -0.9 -2.2 conserved protein of unknown function compare
PP_1629 -0.9 -3.0 Protein RecA compare
PP_2030 -0.9 -3.3 conserved protein of unknown function compare


Specific Phenotypes

For 1 genes in this experiment

For soil Soil=PNNL_Prosser_PlotA_B_20191220; Sterility=sterile; Collection=outgrowth_in_LB_2hrs_then_extra_outgrowth_in_LB; SoilTreatment=none; SoilTreatmentTime=144_hrs in Pseudomonas putida KT2440

For soil Soil=PNNL_Prosser_PlotA_B_20191220; Sterility=sterile; Collection=outgrowth_in_LB_2hrs_then_extra_outgrowth_in_LB; SoilTreatment=none; SoilTreatmentTime=144_hrs across organisms