Experiment set24IT080 for Pseudomonas putida KT2440

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Soil=PNNL_Prosser_PlotA_B_20191220; Sterility=sterile; Collection=outgrowth_in_LB_2hrs_then_extra_outgrowth_in_LB; SoilTreatment=none; SoilTreatmentTime=144_hrs

200 most important genes:

  gene name fitness t score description  
PP_1623 -7.1 -12.8 RNA polymerase, sigma S (sigma 38) factor compare
PP_3484 -5.9 -4.1 Response regulator receiver protein compare
PP_1198 -4.8 -3.3 transcriptional regulator, Cro/CI family (higA antitoxin like) compare
PP_0164 -4.7 -3.3 conserved protein of unknown function compare
PP_5295 -4.4 -1.8 conserved protein of unknown function compare
PP_4994 -4.4 -3.0 conserved protein of unknown function compare
PP_0022 -4.4 -1.2 hypothetical protein compare
PP_0951 -4.2 -8.0 Ribosome hibernation promoting factor compare
PP_1216 -4.2 -3.7 Holliday junction ATP-dependent DNA helicase RuvA compare
PP_1493 -3.7 -4.6 chemotaxis response regulator protein-glutamate methylesterase of group 3 operon compare
PP_0396 -3.6 -13.0 conserved protein of unknown function compare
PP_0966 -3.6 -9.7 Histidinol dehydrogenase compare
PP_0292 -3.5 -3.2 1-(5-phosphoribosyl)-5-((5-phosphoribosylamino)methylideneamino)imidazole-4-carboxamide isomerase (EC 5.3.1.16) (from data) compare
PP_4942 -3.5 -2.4 conserved protein of unknown function compare
PP_3924 -3.5 -2.4 conserved protein of unknown function compare
PP_0397 -3.5 -13.8 protein kinase compare
PP_3946 -3.4 -1.4 HTH-type transcriptional repressor NicR compare
PP_3833 -3.4 -4.4 Response regulator compare
PP_5185 -3.4 -4.6 acetylglutamate kinase-like protein (regulatory domain)/amino acid N-acetyltransferase compare
PP_5456 -3.4 -1.3 conserved protein of unknown function compare
PP_1734 -3.4 -2.3 Probable septum site-determining protein MinC compare
PP_0395 -3.3 -12.5 putative type IV piliation protein compare
PP_2147 -3.3 -2.6 conserved exported protein of unknown function compare
PP_3916 -3.2 -2.2 conserved protein of unknown function compare
PP_5114 -3.2 -2.3 putative adenine methyltransferase compare
PP_0293 -3.1 -1.5 Imidazole glycerol phosphate synthase subunit HisF compare
PP_2280 -3.1 -1.7 conserved protein of unknown function compare
PP_0290 -3.1 -5.3 Imidazole glycerol phosphate synthase subunit HisH compare
PP_1733 -3.0 -2.1 membrane ATPase of the MinC-MinD-MinE system compare
PP_0673 -2.8 -2.0 conserved protein of unknown function compare
PP_1088 -2.8 -8.0 Argininosuccinate synthase compare
PP_4726 -2.8 -3.0 Chaperone protein DnaJ compare
PP_0184 -2.8 -2.7 Argininosuccinate lyase compare
PP_4902 -2.8 -2.7 Oligoribonuclease compare
PP_0967 -2.7 -6.4 histidinol-phosphate aminotransferase (EC 2.6.1.9) (from data) compare
PP_0003 -2.7 -3.0 16S RNA methyltransferase compare
PP_4058 -2.7 -9.3 1,4-alpha-glucan branching enzyme compare
PP_5621 -2.7 -2.1 protein of unknown function compare
PP_4581 -2.6 -2.2 putative amidotransferase compare
PP_0735 -2.6 -1.3 molybdopterin-synthase adenylyltransferase compare
PP_2862 -2.5 -5.6 Undecaprenyl-diphosphatase compare
PP_0566 -2.5 -1.0 translation-related factor compare
PP_4368 -2.5 -3.5 flagellar motor switch protein compare
PP_2370 -2.5 -2.3 conserved protein of unknown function compare
PP_0738 -2.4 -2.4 conserved protein of unknown function compare
PP_5502 -2.4 -2.7 ribosome modulation factor compare
PP_2720 -2.4 -1.2 conserved protein of unknown function compare
PP_4004 -2.4 -4.1 DNA translocase FtsK compare
PP_2327 -2.4 -4.2 transcriptional dual regulator / CysB-O-acetyl-L-serine compare
PP_3037 -2.4 -2.5 C4-type zinc finger protein, DksA/TraR family compare
PP_3902 -2.3 -2.3 conserved protein of unknown function compare
PP_5128 -2.3 -5.7 Dihydroxy-acid dehydratase compare
PP_4067 -2.3 -5.5 methylcrotonyl-CoA carboxylase biotin-containing subunit alpha compare
PP_5145 -2.3 -9.3 phosphoenolpyruvate-dependent regulator (with NPR and NTR proteins) compare
PP_1217 -2.3 -4.9 Holliday junction ATP-dependent DNA helicase RuvB compare
PP_4358 -2.3 -5.7 flagellar synthesis, switching and energizing component compare
PP_2107 -2.3 -1.2 conserved protein of unknown function compare
PP_0888 -2.2 -2.3 Photosynthetic apparatus regulatory protein RegA compare
PP_4369 -2.2 -5.5 Flagellar M-ring protein compare
PP_5473 -2.2 -1.4 putative transcriptional regulator, LuxR family compare
PP_5309 -2.2 -5.6 oxidative and nitrosative stress transcriptional dual regulator compare
PP_0980 -2.2 -5.7 Probable cytosol aminopeptidase compare
PP_4370 -2.2 -3.4 Flagellar hook-basal body complex protein FliE compare
PP_4680 -2.2 -8.7 acetohydroxybutanoate synthase / acetolactate synthase compare
PP_2526 -2.2 -2.8 conserved membrane protein of unknown function compare
PP_4375 -2.2 -6.6 flagellar chaperone, inhibits premature FliC assembly compare
PP_1208 -2.2 -1.6 conserved protein of unknown function, SlyX family compare
PP_4396 -2.2 -2.8 conserved protein of unknown function compare
PP_1986 -2.2 -2.1 3-isopropylmalate dehydratase small subunit compare
PP_4340 -2.2 -3.1 response regulator for chemotactic signal transduction compare
PP_4008 -2.2 -6.5 ATP-dependent serine protease compare
PP_3411 -2.2 -1.1 conserved protein of unknown function compare
PP_5486 -2.2 -1.2 conserved protein of unknown function compare
PP_0914 -2.1 -8.5 GGDEF domain protein compare
PP_4966 -2.1 -2.1 transcriptional regulator of methionine metabolism compare
PP_0289 -2.1 -5.4 Imidazoleglycerol-phosphate dehydratase compare
PP_4143 -2.1 -3.0 conserved protein of unknown function compare
PP_4997 -2.1 -1.4 pyrimidine operon regulatory protein/uracil phosphoribosyltransferase compare
PP_4943 -2.1 -1.7 putative Glycosyl transferase compare
PP_1778 -2.1 -4.8 Lipopolysaccharide ABC export system, permease protein compare
PP_1898 -2.1 -2.0 MotA/TolQ/ExbB proton channel family protein compare
PP_4342 -2.1 -2.0 flagellar synthesis regulator, putative ATPase compare
PP_4836 -2.1 -3.1 conserved exported protein of unknown function compare
PP_4337 -2.1 -3.6 chemotaxis response regulator protein-glutamate methylesterase of group 1 operon compare
PP_0965 -2.1 -5.0 ATP phosphoribosyltransferase (EC 2.4.2.17) (from data) compare
PP_4367 -2.1 -3.7 Flagellar assembly protein FliH compare
PP_4471 -2.0 -4.1 Magnesium transporter compare
PP_4696 -2.0 -3.4 Nitrogen regulation protein NR(I) compare
PP_t13 -2.0 -1.9 tRNA-Lys compare
PP_4890 -2.0 -3.9 ATP phosphoribosyltransferase regulatory subunit compare
PP_5748 -2.0 -1.1 cytochrome c heme lyase subunit compare
PP_4271 -2.0 -0.8 conserved protein of unknown function compare
PP_0512 -2.0 -2.3 hypothetical protein compare
PP_2307 -2.0 -1.5 conserved protein of unknown function compare
PP_3434 -2.0 -2.2 conserved protein of unknown function compare
PP_5346 -2.0 -5.5 pyruvate carboxylase subunit B compare
PP_4285 -2.0 -2.8 5-hydroxyisourate hydrolase compare
PP_1142 -1.9 -0.9 conserved protein of unknown function compare
PP_1979 -1.9 -2.2 putative Hydrolase compare
PP_1731 -1.9 -4.0 23S rRNA (746) and tRNA (32) pseudouridine synthase compare
PP_1763 -1.9 -2.0 putative oxidoreductase compare
PP_1028 -1.9 -2.2 Transcriptional regulator, LysR family compare
PP_2253 -1.9 -1.5 Transcriptional regulator, GntR family compare
PP_3409 -1.9 -2.7 putative Cobalamin biosynthesis protein cobE compare
PP_0065 -1.9 -2.5 NAD-binding component of TrK potassium transporter compare
PP_5232 -1.8 -1.8 conserved protein of unknown function compare
PP_1079 -1.8 -3.4 Ornithine carbamoyltransferase compare
PP_2302 -1.8 -4.1 DNA-binding, ATP-dependent protease compare
PP_0276 -1.8 -0.9 Transcriptional regulator, Cro/CI family compare
PP_2144 -1.8 -3.2 Transcriptional regulator, TetR family compare
PP_4378 -1.8 -8.1 flagellin, filament structural protein compare
PP_0984 -1.8 -2.7 conserved membrane protein of unknown function compare
PP_1988 -1.8 -5.1 3-isopropylmalate dehydrogenase compare
PP_1779 -1.8 -4.5 Lipopolysaccharide ABC export system, ATP-binding protein compare
PP_0291 -1.8 -2.3 conserved protein of unknown function compare
PP_1528 -1.8 -1.2 conserved protein of unknown function compare
PP_5248 -1.8 -1.0 putative hydrolase compare
PP_3320 -1.8 -2.0 conserved protein of unknown function compare
PP_0218 -1.8 -5.8 Sensory box protein compare
PP_3541 -1.8 -1.8 Transporter, MgtC family compare
PP_4909 -1.7 -4.6 phosphoserine phosphatase compare
PP_4262 -1.7 -2.1 Cytochrome oxidase maturation protein, cbb3-type compare
PP_5546 -1.7 -1.7 conserved protein of unknown function compare
PP_4642 -1.7 -0.8 Cyclic diguanosine monophosphate-binding protein compare
PP_0484 -1.7 -4.4 transporter of an unknown substrate compare
PP_1307 -1.7 -2.4 AsnC family transcriptional regulator compare
PP_4122 -1.7 -1.0 proton-pumping NADH:ubiquinone oxidoreductase, respiratory complex I, subunit E compare
PP_2773 -1.7 -1.5 conserved protein of unknown function compare
PP_4682 -1.7 -4.0 conserved protein of unknown function containing tetratricopeptide repeat domain compare
PP_5310 -1.7 -5.0 junction-specific ATP-dependent DNA helicase compare
PP_2214 -1.7 -2.7 3-hydroxyacyl-CoA dehydrogenase type-2 compare
PP_5445 -1.7 -1.2 conserved protein of unknown function compare
PP_1317 -1.7 -2.9 Ubiquinol-cytochrome c reductase iron-sulfur subunit compare
PP_5324 -1.7 -1.7 Response regulator compare
PP_5347 -1.7 -6.5 pyruvate carboxylase subunit A compare
PP_2718 -1.7 -1.0 arsenic resistance transcriptional regulator compare
PP_2031 -1.7 -1.8 conserved protein of unknown function compare
PP_5580 -1.6 -1.6 protein of unknown function compare
PP_1985 -1.6 -3.2 3-isopropylmalate dehydratase large subunit compare
PP_1214 -1.6 -2.1 putative transcriptional regulatory protein compare
PP_5093 -1.6 -1.1 twitching motility protein compare
PP_2433 -1.6 -1.7 conserved protein of unknown function compare
PP_1224 -1.6 -2.8 periplasmic subunit of the TolQRA transport system compare
PP_0986 -1.6 -2.7 aminomethyltransferase compare
PP_4379 -1.6 -2.5 Beta-ketoacyl-acyl-carrier-protein synthase I compare
PP_1318 -1.6 -4.7 Cytochrome b compare
PP_4065 -1.6 -3.6 methylcrotonyl-CoA carboxylase biotin-containing subunit beta compare
PP_4382 -1.6 -4.0 Peptidoglycan hydrolase FlgJ compare
PP_1994 -1.6 -1.1 tRNA pseudouridine (38-40)synthase compare
PP_4891 -1.6 -3.2 integral membrane ATP-dependent zinc metallopeptidase / HflK-HflC complex compare
PP_4366 -1.6 -6.3 flagellum-specific ATP synthase compare
PP_4376 -1.6 -6.6 flagellar filament capping protein compare
PP_3451 -1.6 -3.6 conserved exported protein of unknown function compare
PP_5289 -1.6 -2.6 Acetylglutamate kinase compare
PP_3821 -1.6 -6.0 UTP-glucose-1-phosphate uridylyltransferase compare
PP_4344 -1.6 -6.6 flagellar export pore protein compare
PP_3899 -1.6 -1.2 conserved protein of unknown function, hicB family compare
PP_4981 -1.6 -1.5 polyisoprene-binding protein, acidic stress response factor compare
PP_4792 -1.5 -1.1 conserved exported protein of unknown function compare
PP_0232 -1.5 -1.0 ATP-binding taurine transporter subunit compare
PP_1319 -1.5 -3.3 Ubiquinol--cytochrome c reductase, cytochrome c1 compare
PP_0547 -1.5 -3.1 UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl- meso-diaminopimelate ligase compare
PP_2568 -1.5 -0.9 Ring-cleaving dioxygenase compare
PP_4356 -1.5 -1.8 Flagellar protein FliO compare
PP_1428 -1.5 -1.0 Sigma factor AlgU negative regulatory protein compare
PP_2903 -1.5 -1.2 peptidyl-prolyl cis-trans isomerase B (rotamase B) compare
PP_1498 -1.5 -4.5 putative Lipoprotein compare
PP_4678 -1.5 -5.8 Ketol-acid reductoisomerase compare
PP_4365 -1.5 -2.1 Flagellar protein FliJ compare
PP_1906 -1.5 -2.8 ribosomal large subunit pseudouridine synthase C compare
PP_4380 -1.5 -6.3 Flagellar hook-associated protein FlgL compare
PP_5328 -1.5 -1.0 putative phosphate transport system permease protein compare
PP_4892 -1.5 -3.5 integral membrane ATP-dependent zinc metallopeptidase / HflK-HflC complex compare
PP_0240 -1.4 -2.5 Aliphatic sulfonates import ATP-binding protein SsuB compare
PP_4207 -1.4 -2.5 conserved protein of unknown function compare
PP_2299 -1.4 -1.8 Trigger factor compare
PP_1036 -1.4 -4.8 membrane-bound lytic murein transglycosylase F compare
PP_4120 -1.4 -1.0 NADH-quinone oxidoreductase subunit B compare
PP_4364 -1.4 -1.3 putative Anti-sigma F factor antagonist compare
PP_0775 -1.4 -1.5 conserved protein of unknown function compare
PP_5198 -1.4 -2.3 conserved protein of unknown function compare
PP_3903 -1.4 -1.6 conserved protein of unknown function compare
PP_4359 -1.4 -3.6 Flagellar protein FliL compare
PP_0711 -1.4 -2.1 putative hydrolase compare
PP_5508 -1.4 -0.9 conserved protein of unknown function compare
PP_2520 -1.4 -1.5 conserved protein of unknown function compare
PP_4332 -1.4 -3.3 Chemotaxis protein CheW compare
PP_4129 -1.4 -0.9 NADH:ubiquinone oxidoreductase, membrane subunit L compare
PP_4388 -1.4 -6.1 Flagellar hook protein FlgE compare
PP_4532 -1.4 -1.4 ATP-dependent DEAD-box RNA helicase require for 50S ribosomal subunit biogenesis compare
PP_0832 -1.4 -1.6 S-adenosylmethionine:tRNA ribosyltransferase-isomerase compare
PP_0495 -1.3 -3.4 type 1 L-asparaginase compare
PP_2555 -1.3 -2.5 conserved protein of unknown function compare
PP_4131 -1.3 -2.4 NADH-quinone oxidoreductase subunit N compare
PP_4546 -1.3 -0.9 ATP-dependent helicase HrpA compare
PP_2027 -1.3 -4.4 conserved exported protein of unknown function compare
PP_3862 -1.3 -2.5 putative Phage assembly protein compare
PP_4353 -1.3 -3.6 Flagellar biosynthetic protein fliR compare
PP_4381 -1.3 -5.7 Flagellar hook-associated protein FlgK compare
PP_1025 -1.3 -5.2 2-isopropylmalate synthase compare


Specific Phenotypes

For 1 genes in this experiment

For soil Soil=PNNL_Prosser_PlotA_B_20191220; Sterility=sterile; Collection=outgrowth_in_LB_2hrs_then_extra_outgrowth_in_LB; SoilTreatment=none; SoilTreatmentTime=144_hrs in Pseudomonas putida KT2440

For soil Soil=PNNL_Prosser_PlotA_B_20191220; Sterility=sterile; Collection=outgrowth_in_LB_2hrs_then_extra_outgrowth_in_LB; SoilTreatment=none; SoilTreatmentTime=144_hrs across organisms