Experiment set24IT080 for Pseudomonas putida KT2440

Compare to:

Soil=PNNL_Prosser_PlotA_B_20191220; Sterility=sterile; Collection=outgrowth_in_LB_2hrs_then_extra_outgrowth_in_LB; SoilTreatment=none; SoilTreatmentTime=144_hrs

200 most detrimental genes:

  gene name fitness t score description  
PP_1656 +4.5 11.7 ATP:GTP 3'-pyrophosphotransferase compare
PP_1650 +4.1 14.0 Sensor protein GacS compare
PP_1655 +3.3 5.7 23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD compare
PP_4099 +3.2 8.3 two-componenent system BarA/UvrY - regulatory subunit compare
PP_2070 +2.1 1.2 Transcriptional regulator, AraC family compare
PP_1237 +2.0 1.5 4-hydroxy-tetrahydrodipicolinate synthase compare
PP_4999 +1.9 0.9 dihydroorotase-like protein compare
PP_0574 +1.9 9.2 DNA-binding response regulator, LuxR family compare
PP_4799 +1.9 0.9 putative Muramoyltetrapeptide carboxypeptidase compare
PP_3892 +1.8 2.3 conserved protein of unknown function compare
PP_0719 +1.7 1.5 ribosome-associated potassium-dependent informational ATP/GTPase compare
PP_4196 +1.7 2.2 conserved exported protein of unknown function compare
PP_4504 +1.6 2.4 conserved exported protein of unknown function compare
PP_4723 +1.6 1.1 Carbamoyl-phosphate synthase large chain compare
PP_0916 +1.6 4.7 Amino acid transporter LysE compare
PP_4171 +1.6 7.4 conserved exported protein of unknown function compare
PP_4734 +1.5 7.1 DNA-binding transcriptional dual regulator, LldR-L-lactate compare
PP_t12 +1.5 1.5 tRNA-Thr compare
PP_0856 +1.5 1.0 conserved lipoprotein of unknown function compare
PP_1176 +1.5 1.7 conserved protein of unknown function compare
PP_0319 +1.5 2.4 conserved protein of unknown function compare
PP_5487 +1.4 5.1 conserved protein of unknown function compare
PP_0025 +1.4 1.7 hypothetical protein compare
PP_3365 +1.4 1.9 Acetolactate synthase compare
PP_1038 +1.3 0.9 conserved protein of unknown function compare
PP_3726 +1.3 1.7 Enoyl-CoA hydratase/isomerase family protein compare
PP_1353 +1.3 1.7 conserved membrane protein of unknown function compare
PP_5571 +1.3 1.5 conserved protein of unknown function compare
PP_4424 +1.3 2.4 Uncharacterized HTH-type transcriptional regulator y4tD compare
PP_4100 +1.3 3.6 Transcriptional regulator, Cro/CI family compare
PP_0001 +1.3 1.8 probable chromosome-partitioning protein compare
PP_0241 +1.2 1.8 Transporter compare
PP_1654 +1.2 0.8 cysteine synthase B compare
PP_2976 +1.2 1.0 putative transposase compare
PP_0999 +1.2 2.5 carbamate kinase compare
PP_0152 +1.2 1.4 conserved exported protein of unknown function compare
PP_0048 +1.2 1.5 conserved protein of unknown function compare
PP_3116 +1.2 3.4 transcriptional repressor compare
PP_3971 +1.2 1.8 conserved protein of unknown function compare
PP_4835 +1.2 2.1 conserved exported protein of unknown function compare
PP_4724 +1.2 0.8 Carbamoyl-phosphate synthase small chain compare
PP_0339 +1.2 0.8 Pyruvate dehydrogenase E1 component compare
PP_2046 +1.1 1.5 Transcriptional regulator, LysR family compare
PP_2060 +1.1 2.1 DNA-binding transcriptional dual regulator - SoxR-reversible one-electron oxidation of its [2Fe-2S] cluster, NADPH-dependent compare
PP_4531 +1.1 3.5 conserved exported protein of unknown function compare
PP_1381 +1.1 1.2 4-carboxymuconolactone decarboxylase compare
PP_4957 +1.1 2.5 conserved protein of unknown function compare
PP_3198 +1.1 0.9 Ferredoxin, 2Fe-2S compare
PP_5441 +1.1 1.4 protein of unknown function compare
PP_2970 +1.1 2.5 conserved exported protein of unknown function compare
PP_4817 +1.1 1.6 MaoC domain protein compare
PP_1829 +1.1 1.4 Hydrolase, alpha/beta fold family compare
PP_5644 +1.1 2.1 conserved membrane protein of unknown function compare
PP_3480 +1.1 1.8 conserved protein of unknown function compare
PP_4227 +1.1 1.1 conserved protein of unknown function compare
PP_0900 +1.1 3.2 PAP2 family protein compare
PP_4561 +1.0 0.9 stress response protein compare
PP_2499 +1.0 0.9 conserved protein of unknown function compare
PP_0821 +1.0 1.4 conserved exported protein of unknown function compare
PP_3398 +1.0 1.6 putative Curli fiber surface-exposed nucleator CsgB compare
PP_0855 +1.0 1.9 conserved protein of unknown function compare
PP_3035 +1.0 0.8 conserved protein of unknown function compare
PP_4797 +1.0 1.7 conserved protein of unknown function compare
PP_4238 +1.0 1.9 conserved protein of unknown function compare
PP_0803 +1.0 4.2 Protein secretion ABC efflux system, membrane fusion protein compare
PP_4631 +1.0 1.7 conserved protein of unknown function compare
PP_2000 +1.0 0.7 amidophosphoribosyl transferase compare
PP_0691 +1.0 0.7 Glutamate 5-kinase compare
PP_4230 +1.0 3.1 conserved exported protein of unknown function compare
PP_4268 +1.0 0.8 nucleoid-associated broad specificity regulator compare
PP_5604 +0.9 1.2 putative subtilisin-like serine protease compare
PP_1825 +0.9 2.2 conserved exported protein of unknown function compare
PP_1576 +0.9 2.7 putative Immunity protein compare
PP_4560 +0.9 1.4 putative Ribonuclease BN compare
PP_3808 +0.9 1.3 Antibiotic synthesis protein MbtH compare
PP_4826 +0.9 2.8 Precorrin-3B C17-methyltransferase compare
PP_5017 +0.9 1.0 Sec-independent protein translocase protein TatB compare
PP_4435 +0.9 1.9 conserved protein of unknown function compare
PP_5603 +0.9 2.2 putative FAD dependent oxidoreductase compare
PP_4519 +0.9 5.0 Agglutination protein compare
PP_2337 +0.9 1.3 aconitate isomerase compare
PP_1190 +0.9 2.4 conserved protein of unknown function compare
PP_4808 +0.9 1.5 23S rRNA m3psi1915 methyltransferase compare
PP_1111 +0.9 2.7 putative Synthetase compare
PP_0593 +0.9 0.7 putative ribosome-binding factor compare
PP_3286 +0.9 2.8 DNA-binding transcriptional repressor PaaX(phenylacetyl-CoA) compare
PP_t49 +0.9 2.4 tRNA-Met compare
PP_4564 +0.9 1.9 putative Lipoprotein compare
PP_5SB +0.9 1.2 5S ribosomal RNA compare
PP_3810 +0.9 1.9 conserved protein of unknown function compare
PP_5701 +0.9 1.0 conserved protein of unknown function compare
PP_3643 +0.9 1.6 putative Oxidoreductase compare
PP_2229 +0.9 1.7 putative K(+)/H(+) antiporter subunit C compare
PP_4462 +0.9 3.1 putative 4-hydroxy-4-methyl-2-oxoglutarate aldolase compare
PP_2209 +0.9 4.1 2-aminoethylphosphonate--pyruvate transaminase compare
PP_0273 +0.9 2.2 conserved protein of unknown function compare
PP_4217 +0.9 5.5 outer membrane ferripyoverdine receptor FpvA, TonB-dependent compare
PP_0168 +0.9 6.3 putative surface adhesion protein compare
PP_5548 +0.9 1.1 protein of unknown function compare
PP_3312 +0.9 0.8 putative Heat shock protein compare
PP_3676 +0.8 3.1 conserved protein of unknown function compare
PP_3662 +0.8 3.2 conserved protein of unknown function compare
PP_0868 +0.8 1.9 ABC transporter ATP-binding subunit compare
PP_4246 +0.8 3.7 Periplasmic binding protein compare
PP_1454 +0.8 1.3 conserved protein of unknown function compare
PP_5241 +0.8 1.7 DNA-binding response regulator, LuxR family compare
PP_4109 +0.8 1.0 conserved protein of unknown function compare
PP_3175 +0.8 2.8 putative Dioxygenase, ferredoxin reductase component compare
PP_2510 +0.8 0.9 conserved protein of unknown function compare
PP_2127 +0.8 2.0 Sensor histidine kinase compare
PP_1258 +0.8 2.0 4-hydroxyproline epimerase compare
PP_2055 +0.8 1.5 putative isomerase compare
PP_5053 +0.8 2.6 Protein-export protein SecB compare
PP_3081 +0.8 1.6 conserved protein of unknown function compare
PP_0262 +0.8 1.7 conserved protein of unknown function compare
PP_5140 +0.8 1.6 Transcriptional regulator, MerR family compare
PP_4136 +0.8 0.7 Transcriptional regulator, LuxR family compare
PP_4265 +0.8 0.5 DNA-binding transcriptional dual regulator compare
PP_0869 +0.8 1.7 osmoprotectant ABC transporter permease subunit compare
PP_0797 +0.8 2.2 conserved protein of unknown function compare
PP_3762 +0.8 2.0 Response regulator compare
PP_2889 +0.8 1.8 putative Transmembrane regulator PrtR compare
PP_3496 +0.8 1.5 Endoribonuclease L-PSP compare
PP_1987 +0.8 0.8 Methlytransferase, UbiE/COQ5 family compare
PP_0166 +0.8 4.0 HlyD family secretion protein compare
PP_0275 +0.8 2.3 conserved protein of unknown function compare
PP_1239 +0.8 1.7 Metallo-beta-lactamase family protein compare
PP_2894 +0.8 2.7 conserved protein of unknown function compare
PP_5471 +0.8 0.8 putative response regulator receiver protein compare
PP_1104 +0.8 2.2 AotO-related protein compare
PP_2121 +0.8 1.0 putative Lipoprotein compare
PP_5538 +0.7 2.3 putative ABC transporter, substrate-binding protein compare
PP_0283 +0.7 1.5 Arginine/ornithine transport ATP-binding protein AotP compare
PP_5485 +0.7 2.5 putative N-acetyltransferase, GNAT domain compare
PP_5670 +0.7 2.0 conserved protein of unknown function compare
PP_2999 +0.7 0.9 Glyoxalase family protein compare
PP_1664 +0.7 1.3 phosphoribosylglycinamide formyltransferase 1 compare
PP_5685 +0.7 2.1 protein of unknown function compare
PP_5376 +0.7 2.5 conserved exported protein of unknown function compare
PP_1922 +0.7 1.7 conserved protein of unknown function compare
PP_3707 +0.7 1.5 conserved protein of unknown function compare
PP_0167 +0.7 4.4 Toxin secretion ATP-binding protein compare
PP_2847 +0.7 0.6 Urease accessory protein UreJ compare
PP_4144 +0.7 2.5 Hydroxyacylglutathione hydrolase compare
PP_4237 +0.7 2.5 periplasmic protein disulfide isomerase compare
PP_4710 +0.7 2.8 tRNA pseudouridine 55 synthase compare
PP_1489 +0.7 1.8 CheW domain protein compare
PP_0298 +0.7 2.1 AraC-family transcriptional regulator compare
PP_0989 +0.7 1.1 glycine cleavage system H protein 1 compare
PP_1570 +0.7 1.0 Head-tail adaptor compare
PP_0794 +0.7 2.0 1-phosphofructokinase monomer compare
PP_0801 +0.7 0.8 conserved exported protein of unknown function compare
PP_1676 +0.7 2.1 subunit of adenosylcobinamide-phosphate synthase beta component compare
PP_2137 +0.7 1.2 beta-ketoadipyl CoA thiolase, beta component compare
PP_1480 +0.7 1.4 conserved protein of unknown function compare
PP_4693 +0.7 0.8 RNA polymerase-binding transcription factor DksA compare
PP_0353 +0.7 2.0 Exonuclease compare
PP_4769 +0.7 1.2 conserved protein of unknown function compare
PP_3589 +0.7 2.3 serine:H+ symport permease, threonine-insensitive compare
PP_0703 +0.7 1.3 putative Transmembrane sensor compare
PP_4163 +0.7 2.6 conserved exported protein of unknown function compare
PP_5523 +0.7 2.3 conserved protein of unknown function compare
PP_0194 +0.7 1.7 Transcriptional regulatory protein AlgP compare
PP_0303 +0.7 1.9 dehydrocarnitine cleavage enzyme compare
PP_1477 +0.7 2.2 ssDNA-specific exonuclease RecJ compare
PP_4520 +0.7 1.3 conserved protein of unknown function compare
PP_3392 +0.7 1.0 conserved protein of unknown function compare
PP_1014 +0.7 3.1 aldose-ketose isomerase compare
PP_1501 +0.7 1.8 conserved protein of unknown function compare
PP_2397 +0.7 1.7 EF hand domain protein compare
PP_3188 +0.7 2.0 conserved protein of unknown function compare
PP_3303 +0.7 1.9 3-oxoacyl-[acyl-carrier-protein] synthase 2 compare
PP_4409 +0.7 2.3 Site-specific recombinase, phage integrase family compare
PP_3444 +0.7 2.0 Glyoxalase family protein compare
PP_1583 +0.7 2.5 putative Structural protein P5 compare
PP_2132 +0.7 1.2 Universal stress protein compare
PP_5605 +0.7 2.6 conserved exported protein of unknown function compare
PP_5231 +0.7 1.5 putative (S)-2-haloacid dehalogenase compare
PP_3378 +0.6 0.8 putative 2-ketogluconokinase compare
PP_5569 +0.6 1.0 protein of unknown function of phage origin compare
PP_4138 +0.6 1.3 Chromate reductase compare
PP_1678 +0.6 1.1 bifunctional cobinamide-P guanylyltransferase - adenosylcobinamide kinase compare
PP_0340 +0.6 3.5 Glutamate-ammonia-ligase adenylyltransferase compare
PP_1364 +0.6 2.8 conserved exported protein of unknown function compare
PP_2231 +0.6 0.8 putative permease of the drug/metabolite transporter (DMT) superfamily compare
PP_3277 +0.6 0.8 ring 1,2-phenylacetyl-CoA epoxidase regulatory subunit compare
PP_5452 +0.6 1.3 protein of unknown function compare
PP_2610 +0.6 1.6 conserved protein of unknown function compare
PP_4498 +0.6 2.7 Segregation and condensation protein A compare
PP_1875 +0.6 3.0 Sensor histidine kinase/response regulator compare
PP_4503 +0.6 1.1 DNA-binding response regulator compare
PP_4568 +0.6 1.7 putative metabolite efflux pump compare
PP_0893 +0.6 1.6 ThiJ/PfpI family protein compare
PP_1892 +0.6 0.8 conserved protein of unknown function compare
PP_5519 +0.6 1.0 conserved protein of unknown function of phage origin compare
PP_5708 +0.6 2.1 protein of unknown function compare
PP_1562 +0.6 0.8 putative Phage terminase, small subunit compare
PP_3951 +0.6 1.9 3-oxoadipate CoA-transferase subunit A compare
PP_1204 +0.6 1.9 putative Lipoprotein compare
PP_0109 +0.6 1.3 conserved membrane protein of unknown function compare


Specific Phenotypes

For 1 genes in this experiment

For soil Soil=PNNL_Prosser_PlotA_B_20191220; Sterility=sterile; Collection=outgrowth_in_LB_2hrs_then_extra_outgrowth_in_LB; SoilTreatment=none; SoilTreatmentTime=144_hrs in Pseudomonas putida KT2440

For soil Soil=PNNL_Prosser_PlotA_B_20191220; Sterility=sterile; Collection=outgrowth_in_LB_2hrs_then_extra_outgrowth_in_LB; SoilTreatment=none; SoilTreatmentTime=144_hrs across organisms