Experiment set24IT072 for Pseudomonas putida KT2440

Compare to:

Soil=PNNL_Prosser_PlotA_B_20191220; Sterility=nonsterile; Collection=outgrowth_in_LB; SoilTreatment=none; SoilTreatmentTime=144_hrs

200 most important genes:

  gene name fitness t score description  
PP_1623 -6.7 -8.2 RNA polymerase, sigma S (sigma 38) factor compare
PP_0164 -5.3 -9.5 conserved protein of unknown function compare
PP_1779 -5.0 -9.9 Lipopolysaccharide ABC export system, ATP-binding protein compare
PP_4902 -4.8 -3.3 Oligoribonuclease compare
PP_1778 -4.1 -9.6 Lipopolysaccharide ABC export system, permease protein compare
PP_4058 -3.9 -14.0 1,4-alpha-glucan branching enzyme compare
PP_0406 -3.6 -3.5 Nucleotidyltransferase family protein compare
PP_4008 -3.4 -8.3 ATP-dependent serine protease compare
PP_0547 -3.2 -6.1 UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl- meso-diaminopimelate ligase compare
PP_4122 -3.1 -2.2 proton-pumping NADH:ubiquinone oxidoreductase, respiratory complex I, subunit E compare
PP_4726 -2.8 -4.6 Chaperone protein DnaJ compare
PP_0949 -2.7 -6.9 putative ATP-binding protein UPF0042 compare
PP_4342 -2.6 -3.9 flagellar synthesis regulator, putative ATPase compare
PP_0184 -2.5 -6.2 Argininosuccinate lyase compare
PP_4994 -2.5 -5.5 conserved protein of unknown function compare
PP_3484 -2.5 -3.2 Response regulator receiver protein compare
PP_1734 -2.4 -6.2 Probable septum site-determining protein MinC compare
PP_4379 -2.3 -3.9 Beta-ketoacyl-acyl-carrier-protein synthase I compare
PP_5095 -2.3 -1.6 pyrroline-5-carboxylate reductase compare
PP_4375 -2.3 -8.6 flagellar chaperone, inhibits premature FliC assembly compare
PP_5289 -2.3 -3.4 Acetylglutamate kinase compare
PP_1198 -2.3 -3.0 transcriptional regulator, Cro/CI family (higA antitoxin like) compare
PP_4129 -2.3 -3.4 NADH:ubiquinone oxidoreductase, membrane subunit L compare
PP_2402 -2.3 -2.4 putative Sensor histidine kinase compare
PP_2031 -2.2 -3.0 conserved protein of unknown function compare
PP_4124 -2.2 -3.6 NADH-quinone oxidoreductase subunit G compare
PP_4383 -2.1 -5.0 Flagellar P-ring protein compare
PP_1088 -2.1 -9.4 Argininosuccinate synthase compare
PP_4370 -2.1 -4.1 Flagellar hook-basal body complex protein FliE compare
PP_4337 -2.1 -5.2 chemotaxis response regulator protein-glutamate methylesterase of group 1 operon compare
PP_5145 -2.0 -13.5 phosphoenolpyruvate-dependent regulator (with NPR and NTR proteins) compare
PP_1733 -2.0 -2.8 membrane ATPase of the MinC-MinD-MinE system compare
PP_2214 -2.0 -3.8 3-hydroxyacyl-CoA dehydrogenase type-2 compare
PP_4964 -2.0 -3.5 D-erythrose 4-phosphate dehydrogenase compare
PP_0846 -2.0 -1.6 DnaK-like molecular chaperone specific for IscU compare
PP_1215 -2.0 -2.4 Crossover junction endodeoxyribonuclease RuvC compare
PP_4361 -2.0 -6.2 Flagellar hook-length control protein FliK compare
PP_4369 -2.0 -5.6 Flagellar M-ring protein compare
PP_4353 -1.9 -6.5 Flagellar biosynthetic protein fliR compare
PP_2903 -1.9 -3.2 peptidyl-prolyl cis-trans isomerase B (rotamase B) compare
PP_5185 -1.9 -5.6 acetylglutamate kinase-like protein (regulatory domain)/amino acid N-acetyltransferase compare
PP_4391 -1.9 -6.7 flagellar basal-body rod protein FlgB compare
PP_4394 -1.8 -5.7 flagella basal body P-ring formation protein compare
PP_4354 -1.8 -3.9 flagellar export apparatus subunit compare
PP_4700 -1.8 -1.7 pantothenate synthetase compare
PP_4366 -1.8 -8.3 flagellum-specific ATP synthase compare
PP_4121 -1.7 -3.8 NADH-quinone oxidoreductase subunit C/D compare
PP_1493 -1.7 -2.7 chemotaxis response regulator protein-glutamate methylesterase of group 3 operon compare
PP_3649 -1.7 -4.1 Transcriptional regulator, GntR family compare
PP_4378 -1.7 -10.9 flagellin, filament structural protein compare
PP_4296 -1.7 -2.3 conserved exported protein of unknown function compare
PP_4396 -1.7 -3.6 conserved protein of unknown function compare
PP_4471 -1.7 -5.2 Magnesium transporter compare
PP_2433 -1.7 -3.9 conserved protein of unknown function compare
PP_4390 -1.7 -5.4 flagellar basal-body rod protein FlgC compare
PP_4356 -1.7 -4.4 Flagellar protein FliO compare
PP_4344 -1.6 -7.7 flagellar export pore protein compare
PP_4386 -1.6 -4.9 flagellar basal-body rod protein FlgF compare
PP_4388 -1.6 -10.5 Flagellar hook protein FlgE compare
PP_4380 -1.6 -10.1 Flagellar hook-associated protein FlgL compare
PP_4341 -1.6 -8.3 RNA polymerase sigma 28 (sigma F) factor for class III flagellar operons compare
PP_4352 -1.5 -8.1 flagellin export apparatus, substrate specificity protein compare
PP_5350 -1.5 -4.0 Transcriptional regulator, RpiR family compare
PP_4376 -1.5 -8.3 flagellar filament capping protein compare
PP_4891 -1.5 -3.8 integral membrane ATP-dependent zinc metallopeptidase / HflK-HflC complex compare
PP_1036 -1.5 -7.3 membrane-bound lytic murein transglycosylase F compare
PP_4943 -1.5 -2.9 putative Glycosyl transferase compare
PP_4804 -1.5 -2.0 RlpA-like lipoprotein compare
PP_0395 -1.5 -9.7 putative type IV piliation protein compare
PP_2442 -1.5 -2.7 conserved protein of unknown function, DUF480 family compare
PP_1428 -1.5 -2.0 Sigma factor AlgU negative regulatory protein compare
PP_5748 -1.5 -2.0 cytochrome c heme lyase subunit compare
PP_0218 -1.5 -5.9 Sensory box protein compare
PP_4382 -1.5 -7.8 Peptidoglycan hydrolase FlgJ compare
PP_4131 -1.5 -4.8 NADH-quinone oxidoreductase subunit N compare
PP_4384 -1.5 -7.4 Flagellar L-ring protein compare
PP_4892 -1.4 -4.0 integral membrane ATP-dependent zinc metallopeptidase / HflK-HflC complex compare
PP_4338 -1.4 -6.4 Chemotaxis histidine kinase CheA compare
PP_1217 -1.4 -4.5 Holliday junction ATP-dependent DNA helicase RuvB compare
PP_4381 -1.4 -8.5 Flagellar hook-associated protein FlgK compare
PP_4696 -1.4 -3.7 Nitrogen regulation protein NR(I) compare
PP_0397 -1.4 -9.4 protein kinase compare
PP_4909 -1.4 -5.6 phosphoserine phosphatase compare
PP_4358 -1.4 -4.3 flagellar synthesis, switching and energizing component compare
PP_1898 -1.4 -2.4 MotA/TolQ/ExbB proton channel family protein compare
PP_2144 -1.4 -3.4 Transcriptional regulator, TetR family compare
PP_5329 -1.4 -1.3 putative phosphate ABC transporter, periplasmic phosphate-binding protein compare
PP_0396 -1.3 -8.3 conserved protein of unknown function compare
PP_4824 -1.3 -5.0 Sensor histidine kinase/response regulator compare
PP_2462 -1.3 -2.5 conserved protein of unknown function compare
PP_4389 -1.3 -4.8 Flagellar basal-body rod modification protein FlgD compare
PP_5328 -1.3 -2.0 putative phosphate transport system permease protein compare
PP_4385 -1.3 -5.1 flagellar basal-body rod protein FlgG compare
PP_4332 -1.3 -2.7 Chemotaxis protein CheW compare
PP_2027 -1.3 -4.9 conserved exported protein of unknown function compare
PP_4880 -1.3 -6.7 exoribonuclease R compare
PP_5146 -1.3 -5.7 RNA pyrophosphohydrolase compare
PP_4199 -1.3 -1.2 putative Lipoprotein compare
PP_2145 -1.3 -2.1 beta-N-acetylglucosaminidase compare
PP_4120 -1.3 -2.6 NADH-quinone oxidoreductase subunit B compare
PP_5090 -1.3 -1.8 putative cell division protein compare
PP_4368 -1.2 -4.1 flagellar motor switch protein compare
PP_4941 -1.2 -4.8 conserved exported protein of unknown function compare
PP_1994 -1.2 -1.6 tRNA pseudouridine (38-40)synthase compare
PP_2336 -1.2 -1.8 aconitate hydratase 1 compare
PP_3833 -1.2 -3.6 Response regulator compare
PP_0951 -1.2 -5.0 Ribosome hibernation promoting factor compare
PP_2280 -1.2 -2.8 conserved protein of unknown function compare
PP_4343 -1.2 -4.0 Flagellar biosynthesis protein FlhF compare
PP_4365 -1.2 -4.6 Flagellar protein FliJ compare
PP_2650 -1.2 -3.8 putative 4-hydroxybutyrate dehydrogenase compare
PP_1232 -1.2 -6.3 conserved exported protein of unknown function compare
PP_1319 -1.2 -4.1 Ubiquinol--cytochrome c reductase, cytochrome c1 compare
PP_3821 -1.2 -5.7 UTP-glucose-1-phosphate uridylyltransferase compare
PP_0789 -1.2 -3.8 N-acetyl-anhydromuramyl-L-alanine-amidase compare
PP_4262 -1.2 -2.3 Cytochrome oxidase maturation protein, cbb3-type compare
PP_4253 -1.1 -2.9 cytochrome c oxidase subunit, cbb3-type compare
PP_5338 -1.1 -2.1 aspartate ammonia-lyase compare
PP_1455 -1.1 -3.1 conserved protein of unknown function compare
PP_1317 -1.1 -3.5 Ubiquinol-cytochrome c reductase iron-sulfur subunit compare
PP_5337 -1.1 -3.5 LysR family transcriptional regulator compare
PP_4340 -1.1 -3.8 response regulator for chemotactic signal transduction compare
PP_2160 -1.1 -3.1 NADPH-dependent 7-cyano-7-deazaguanine reductase compare
PP_0405 -1.1 -5.3 conserved protein of unknown function compare
PP_1318 -1.1 -3.6 Cytochrome b compare
PP_1906 -1.1 -2.6 ribosomal large subunit pseudouridine synthase C compare
PP_0963 -1.0 -2.4 putative BolA family protein compare
PP_4392 -1.0 -4.1 chemotaxis protein methyltransferase compare
PP_5502 -1.0 -2.8 ribosome modulation factor compare
PP_2029 -1.0 -2.3 von Willebrand factor type A domain protein compare
PP_4098 -1.0 -2.2 UvrABC system protein C compare
PP_4367 -1.0 -1.7 Flagellar assembly protein FliH compare
PP_4136 -1.0 -1.3 Transcriptional regulator, LuxR family compare
PP_5705 -1.0 -1.5 protein of unknown function compare
PP_5198 -1.0 -2.4 conserved protein of unknown function compare
PP_5423 -1.0 -1.8 conserved membrane protein of unknown function compare
PP_1366 -1.0 -1.3 Transcriptional regulator MvaT, P16 subunit compare
PP_4004 -1.0 -2.6 DNA translocase FtsK compare
PP_4944 -1.0 -2.8 Carbamoyltransferase compare
PP_4808 -1.0 -2.1 23S rRNA m3psi1915 methyltransferase compare
PP_5279 -1.0 -2.1 conserved protein of unknown function compare
PP_4331 -1.0 -4.9 conserved protein of unknown function compare
PP_5217 -0.9 -6.6 Polyphosphate kinase compare
PP_3380 -0.9 -2.9 2-ketogluconate utilization repressor compare
PP_4333 -0.9 -3.8 CheW domain protein compare
PP_0852 -0.9 -1.7 Transcriptional regulator, Cro/CI family compare
PP_4942 -0.9 -1.9 conserved protein of unknown function compare
PP_3365 -0.9 -1.1 Acetolactate synthase compare
PP_1860 -0.9 -2.7 Organic hydroperoxide resistance transcriptional regulator compare
PP_4722 -0.9 -2.8 Transcription elongation factor GreA compare
PP_4499 -0.9 -2.4 putative maturation enzyme compare
PP_2302 -0.9 -2.9 DNA-binding, ATP-dependent protease compare
PP_2153 -0.9 -2.1 conserved protein of unknown function compare
PP_4130 -0.9 -2.7 NADH:ubiquinone oxidoreductase, membrane subunit M compare
PP_4273 -0.9 -1.3 Transcriptional regulator, MerR family compare
PP_0435 -0.9 -4.5 Peptidase, M23/M37 family compare
PP_1226 -0.9 -3.1 pre-queuosine 0 synthase compare
PP_1783 -0.9 -0.6 dTDP-glucose pyrophosphorylase compare
PP_1410 -0.9 -1.1 conserved protein of unknown function compare
PP_5610 -0.9 -1.8 protein of unknown function compare
PP_4364 -0.9 -1.8 putative Anti-sigma F factor antagonist compare
PP_1293 -0.9 -1.0 molybdopterin synthase small subunit compare
PP_4359 -0.9 -3.3 Flagellar protein FliL compare
PP_4334 -0.9 -4.4 ParA family protein compare
PP_0393 -0.8 -1.1 putative 2-amino-4-hydroxy-6-hydroxymethyldihydropteridine pyrophosphokinase compare
PP_1763 -0.8 -1.8 putative oxidoreductase compare
PP_5327 -0.8 -1.9 putative phosphate ABC transporter, permease subunit compare
PP_0290 -0.8 -3.1 Imidazole glycerol phosphate synthase subunit HisH compare
PP_2077 -0.8 -3.0 diaminopimelate decarboxylase compare
PP_4377 -0.8 -2.1 putative Flagellin FlaG compare
PP_5652 -0.8 -1.5 conserved protein of unknown function, phage origin compare
PP_1598 -0.8 -2.6 regulatory intramembrane protein RIP zinc protease compare
PP_2429 -0.8 -1.4 putative Membrane protein compare
PP_2900 -0.8 -1.7 conserved protein of unknown function compare
PP_0123 -0.8 -4.0 DNA polymerase I, 5 compare
PP_3891 -0.8 -1.3 conserved protein of unknown function compare
PP_4143 -0.8 -2.6 conserved protein of unknown function compare
PP_1523 -0.8 -2.2 conserved protein of unknown function compare
PP_2196 -0.8 -1.7 agmatinase compare
PP_1804 -0.8 -4.3 Glycosyl transferase WbpL compare
PP_5628 -0.8 -2.0 conserved protein of unknown function compare
PP_4505 -0.8 -3.5 Sensor histidine kinase compare
PP_5295 -0.8 -1.5 conserved protein of unknown function compare
PP_1553 -0.8 -1.3 conserved protein of unknown function compare
PP_4937 -0.8 -3.1 toluene tolerance protein compare
PP_4546 -0.8 -2.0 ATP-dependent helicase HrpA compare
PP_4532 -0.8 -1.7 ATP-dependent DEAD-box RNA helicase require for 50S ribosomal subunit biogenesis compare
PP_4642 -0.8 -0.9 Cyclic diguanosine monophosphate-binding protein compare
PP_1790 -0.8 -1.5 putative Acylneuraminate cytidylyltransferase compare
PP_2378 -0.8 -1.3 Fe/S biogenesis protein NfuA compare
PP_1214 -0.8 -1.3 putative transcriptional regulatory protein compare
PP_5232 -0.8 -1.6 conserved protein of unknown function compare
PP_2299 -0.8 -1.6 Trigger factor compare
PP_1328 -0.7 -1.4 Protein MraZ compare
PP_3073 -0.7 -2.4 3-hydroxybutyrate dehydrogenase compare
PP_2884 -0.7 -3.4 XRE family transcriptional regulator compare
PP_4904 -0.7 -4.4 Flagellar motor rotation protein compare
PP_5000 -0.7 -1.3 peptidase component of the ATP-dependent HslVU protease compare
PP_4067 -0.7 -3.4 methylcrotonyl-CoA carboxylase biotin-containing subunit alpha compare
PP_5028 -0.7 -2.1 proline iminopeptidase compare


Specific Phenotypes

None in this experiment

For Pseudomonas putida KT2440 in soil experiments

For soil Soil=PNNL_Prosser_PlotA_B_20191220; Sterility=nonsterile; Collection=outgrowth_in_LB; SoilTreatment=none; SoilTreatmentTime=144_hrs across organisms