Experiment set24IT072 for Pseudomonas putida KT2440

Compare to:

Soil=PNNL_Prosser_PlotA_B_20191220; Sterility=nonsterile; Collection=outgrowth_in_LB; SoilTreatment=none; SoilTreatmentTime=144_hrs

200 most detrimental genes:

  gene name fitness t score description  
PP_1656 +2.7 9.3 ATP:GTP 3'-pyrophosphotransferase compare
PP_1655 +2.3 6.0 23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD compare
PP_1650 +2.2 18.7 Sensor protein GacS compare
PP_4099 +2.1 14.6 two-componenent system BarA/UvrY - regulatory subunit compare
PP_4874 +1.5 2.1 50S ribosomal protein L9 compare
PP_3971 +1.4 2.6 conserved protein of unknown function compare
PP_0916 +1.3 4.0 Amino acid transporter LysE compare
PP_4268 +1.2 1.3 nucleoid-associated broad specificity regulator compare
PP_5201 +1.0 2.9 conserved protein of unknown function, UPF0149 family compare
PP_4561 +1.0 1.4 stress response protein compare
PP_3726 +1.0 1.5 Enoyl-CoA hydratase/isomerase family protein compare
PP_1045 +1.0 2.4 Type II secretion pathway protein XcpP compare
PP_3034 +1.0 2.5 putative Regulator protein compare
PP_1237 +1.0 0.8 4-hydroxy-tetrahydrodipicolinate synthase compare
PP_2880 +1.0 1.8 Transcriptional regulator, TetR family compare
PP_3398 +0.9 2.2 putative Curli fiber surface-exposed nucleator CsgB compare
PP_3384 +0.9 4.3 gluconate 2-dehydrogenase gamma subunit compare
PP_3392 +0.9 2.4 conserved protein of unknown function compare
PP_0959 +0.9 2.3 phospholipid ABC transporter compare
PP_4797 +0.9 1.7 conserved protein of unknown function compare
PP_2747 +0.9 0.8 conserved protein of unknown function compare
PP_0703 +0.9 3.3 putative Transmembrane sensor compare
PP_1999 +0.8 0.9 membrane protein required for colicin V production compare
PP_3876 +0.8 2.7 conserved protein of unknown function compare
PP_5471 +0.8 1.4 putative response regulator receiver protein compare
PP_0608 +0.8 3.3 putative type 4 fimbrial biogenesis protein compare
PP_3328 +0.8 2.7 putative Ring-cleaving dioxygenase compare
PP_3892 +0.8 1.3 conserved protein of unknown function compare
PP_1824 +0.8 1.7 Smr domain protein compare
PP_3098 +0.8 1.2 conserved protein of unknown function compare
PP_0958 +0.8 3.3 phospholipid ABC transporter ATP-binding subunit compare
PP_2121 +0.7 1.0 putative Lipoprotein compare
PP_4171 +0.7 6.3 conserved exported protein of unknown function compare
PP_5093 +0.7 1.8 twitching motility protein compare
PP_2403 +0.7 1.7 Chemotaxis protein CheY compare
PP_2107 +0.7 0.9 conserved protein of unknown function compare
PP_1987 +0.7 1.8 Methlytransferase, UbiE/COQ5 family compare
PP_2633 +0.7 1.8 conserved protein of unknown function compare
PP_5008 +0.7 0.6 Poly granule-associated protein compare
PP_1683 +0.7 2.5 Transcriptional regulator, MarR family compare
PP_0874 +0.7 1.8 conserved protein of unknown function compare
PP_0001 +0.7 0.9 probable chromosome-partitioning protein compare
PP_1713 +0.7 1.9 Transcriptional regulator PcaQ compare
PP_2999 +0.7 1.3 Glyoxalase family protein compare
PP_0048 +0.7 1.3 conserved protein of unknown function compare
PP_4835 +0.7 1.6 conserved exported protein of unknown function compare
PP_0035 +0.7 1.6 putative bactoprenol-linked glycose transferase compare
PP_3840 +0.7 1.2 conserved protein of unknown function compare
PP_5473 +0.7 1.9 putative transcriptional regulator, LuxR family compare
PP_0787 +0.7 1.7 quinolinate phosphoribosyltransferase (decarboxylating) monomer compare
PP_2322 +0.6 3.8 Major outer membrane lipoprotein compare
PP_1415 +0.6 2.3 putative membrane associated enzyme subunit compare
PP_0855 +0.6 1.5 conserved protein of unknown function compare
PP_5571 +0.6 1.0 conserved protein of unknown function compare
PP_1736 +0.6 2.1 conserved protein of unknown function compare
PP_1352 +0.6 1.4 UPF0234 protein PP_1352 compare
PP_2976 +0.6 1.4 putative transposase compare
PP_1554 +0.6 1.3 conserved protein of unknown function compare
PP_1742 +0.6 2.9 conserved inner membrane protein of unknown function compare
PP_2756 +0.6 1.8 conserved protein of unknown function compare
PP_3427 +0.6 1.8 Multidrug efflux RND outer membrane protein OprN compare
PP_5191 +0.6 1.9 conserved exported protein of unknown function compare
PP_2497 +0.6 1.4 conserved protein of unknown function compare
PP_5388 +0.6 1.9 probable exported copper efflux protein compare
PP_1153 +0.6 1.7 putative lipoprotein compare
PP_0999 +0.6 1.8 carbamate kinase compare
PP_1876 +0.6 2.7 putative ATP/GTP-binding protein of the AAA+ family compare
PP_1679 +0.6 2.4 Nicotinate-nucleotide--dimethylbenzimidazole phosphoribosyltransferase compare
PP_2430 +0.6 2.2 Transcriptional regulator, AraC family compare
PP_1122 +0.6 0.9 OmpA family protein compare
PP_5675 +0.6 2.0 conserved protein of unknown function compare
PP_2087 +0.6 0.9 CmpX protein compare
PP_1568 +0.6 0.9 conserved protein of unknown function compare
PP_2388 +0.6 1.8 Transporter, LysE family compare
PP_0856 +0.6 0.8 conserved lipoprotein of unknown function compare
PP_0086 +0.6 1.8 conserved protein of unknown function compare
PP_2504 +0.6 1.6 putative tautomerase K2 compare
PP_1390 +0.6 1.7 conserved exported protein of unknown function compare
PP_2847 +0.6 1.1 Urease accessory protein UreJ compare
PP_5619 +0.6 2.0 protein of unknown function compare
PP_1562 +0.5 1.1 putative Phage terminase, small subunit compare
PP_0210 +0.5 2.6 putative Phycobiliprotein compare
PP_3312 +0.5 0.8 putative Heat shock protein compare
PP_2978 +0.5 2.3 conserved protein of unknown function compare
PP_2575 +0.5 1.0 conserved exported protein of unknown function compare
PP_4162 +0.5 1.4 conserved membrane protein of unknown function compare
PP_3919 +0.5 1.7 conserved protein of unknown function compare
PP_5144 +0.5 1.8 conserved protein of unknown function compare
PP_3729 +0.5 2.2 Periplasmic amino acid-binding protein-related protein compare
PP_4094 +0.5 1.8 conserved protein of unknown function compare
PP_5048 +0.5 2.7 two-component system DNA-binding transcriptional dual regulator GlnL/GlnG compare
PP_4227 +0.5 1.2 conserved protein of unknown function compare
PP_3562 +0.5 2.8 conserved exported protein of unknown function compare
PP_1691 +0.5 1.1 conserved protein of unknown function compare
PP_0725 +0.5 1.8 conserved hypothetical TPR repeat protein compare
PP_2825 +0.5 3.2 putative Integrase compare
PP_3441 +0.5 2.9 conserved protein of unknown function compare
PP_5535 +0.5 1.9 conserved membrane protein of unknown function compare
PP_1397 +0.5 1.1 conserved protein of unknown function compare
PP_5605 +0.5 2.1 conserved exported protein of unknown function compare
PP_0353 +0.5 2.5 Exonuclease compare
PP_3061 +0.5 2.2 conserved protein of unknown function compare
PP_2254 +0.5 2.3 Transcriptional regulator, GntR family compare
PP_5549 +0.5 1.7 conserved protein of unknown function compare
PP_5583 +0.5 0.8 conserved protein of unknown function compare
PP_0092 +0.5 1.3 putative lipoprotein compare
PP_2750 +0.5 1.6 putative Branched-chain amino acid ABC transporter, permease protein compare
PP_4246 +0.5 3.1 Periplasmic binding protein compare
PP_3423 +0.5 3.1 Type II secretion pathway protein XcpT compare
PP_5453 +0.5 0.8 conserved protein of unknown function compare
PP_4622 +0.5 1.5 Hmg transcriptional repressor compare
PP_4452 +0.5 1.8 NAD/NADP octopine/nopaline dehydrogenase family protein compare
PP_0283 +0.5 1.3 Arginine/ornithine transport ATP-binding protein AotP compare
PP_3679 +0.5 2.4 conserved protein of unknown function compare
PP_5080 +0.5 1.6 type 4 pili biogenesis protein compare
PP_0534 +0.5 2.1 putative Transcriptional regulator PfeR compare
PP_3228 +0.5 2.7 putative Periplasmic aliphatic sulfonate-binding protein compare
PP_2950 +0.5 1.4 conserved protein of unknown function compare
PP_0632 +0.5 1.8 leader peptidase/N-methyltransferase compare
PP_3407 +0.5 0.8 conserved protein of unknown function compare
PP_3372 +0.5 2.7 CpxR-Pasp DNA-binding transcriptional two-component system regulator compare
PP_1113 +0.5 3.0 Pyridoxal-phosphate dependent enzyme family protein compare
PP_4217 +0.5 4.1 outer membrane ferripyoverdine receptor FpvA, TonB-dependent compare
PP_3943 +0.5 2.6 N-formylmaleamate deformylase compare
PP_3806 +0.4 0.8 Hydrolase, isochorismatase family compare
PP_2846 +0.4 1.5 urease accessory protein compare
PP_2060 +0.4 1.2 DNA-binding transcriptional dual regulator - SoxR-reversible one-electron oxidation of its [2Fe-2S] cluster, NADPH-dependent compare
PP_3480 +0.4 1.9 conserved protein of unknown function compare
PP_2229 +0.4 1.7 putative K(+)/H(+) antiporter subunit C compare
PP_5156 +0.4 1.6 conserved exported protein of unknown function compare
PP_1649 +0.4 1.0 D-lactate dehydrogenase compare
PP_1269 +0.4 0.6 Universal stress protein family compare
PP_1699 +0.4 1.8 2-pyrone-4,6-dicarboxylic acid hydrolase compare
PP_3676 +0.4 2.1 conserved protein of unknown function compare
PP_3230 +0.4 1.6 Phosphoribosyl transferase domain protein compare
PP_0206 +0.4 1.7 Ferredoxin, 4Fe-4S compare
PP_4789 +0.4 2.1 heat shock protein, Co2+ and Mg2+ efflux protein compare
PP_2764 +0.4 0.8 FMN reductase (NADPH) compare
PP_2996 +0.4 2.3 conserved protein of unknown function compare
PP_3110 +0.4 0.8 protein of unknown function compare
PP_4152 +0.4 2.2 conserved protein of unknown function compare
PP_1828 +0.4 1.2 conserved protein of unknown function compare
PP_0939 +0.4 1.6 Carbon-nitrogen hydrolase family protein compare
PP_4555 +0.4 1.2 conserved protein of unknown function compare
PP_5223 +0.4 1.9 regulator of nucleotide diphosphokinase compare
PP_3888 +0.4 1.1 conserved protein of unknown function compare
PP_3589 +0.4 1.3 serine:H+ symport permease, threonine-insensitive compare
PP_5488 +0.4 2.0 conserved protein of unknown function compare
PP_5685 +0.4 1.3 protein of unknown function compare
PP_3685 +0.4 1.5 conserved protein of unknown function compare
PP_0663 +0.4 1.4 Transcriptional regulator, AsnC family compare
PP_0611 +0.4 2.4 Type IV pili biogenesis protein PilE compare
PP_4100 +0.4 2.4 Transcriptional regulator, Cro/CI family compare
PP_4069 +0.4 1.6 conserved protein of unknown function compare
PP_0025 +0.4 0.7 hypothetical protein compare
PP_4930 +0.4 2.2 putative small multidrug resistance protein compare
PP_1576 +0.4 2.0 putative Immunity protein compare
PP_2898 +0.4 1.0 conserved exported protein of unknown function compare
PP_3233 +0.4 1.1 transcriptional regulator with 4Fe-4S cluster, Crp/Fnr family compare
PP_0762 +0.4 1.6 Glycerate dehydrogenase compare
PP_1076 +0.4 1.3 aquaglyceroporin compare
PP_4957 +0.4 1.6 conserved protein of unknown function compare
PP_2677 +0.4 0.7 conserved exported protein of unknown function compare
PP_2124 +0.4 1.5 putative Glycosyl transferase compare
PP_3197 +0.4 1.5 Glyoxalase family protein compare
PP_4901 +0.4 1.9 conserved inner membrane protein compare
PP_5688 +0.4 1.5 putative NAD(FAD)-dependent dehydrogenase with Fer2_4 domain compare
PP_3303 +0.4 1.8 3-oxoacyl-[acyl-carrier-protein] synthase 2 compare
PP_2509 +0.4 1.2 conserved protein of unknown function compare
PP_2759 +0.4 1.3 ribose ABC transporter - ATP-binding subunit compare
PP_3055 +0.4 1.2 Pyocin R2_PP, tail formation protein compare
PP_5575 +0.4 1.1 conserved protein of unknown function compare
PP_4133 +0.4 0.9 Transcriptional regulator-related protein compare
PP_2209 +0.4 2.0 2-aminoethylphosphonate--pyruvate transaminase compare
PP_2345 +0.4 0.8 conserved exported protein of unknown function compare
PP_5654 +0.4 0.6 putative phosphotriesterase compare
PP_0262 +0.4 1.6 conserved protein of unknown function compare
PP_4760 +0.4 0.7 Alcohol dehydrogenase, zinc-containing compare
PP_2159 +0.4 1.9 Copper-binding protein, plastocyanin/azurin family compare
PP_3141 +0.4 2.4 Glycosyl transferase, WecB/TagA/CpsF family compare
PP_2804 +0.4 1.9 Hydrolase, alpha/beta fold family compare
PP_2794 +0.4 0.8 Oxidoreductase, short chain dehydrogenase/reductase family compare
PP_2075 +0.4 2.1 conserved membrane protein of unknown function compare
PP_3337 +0.4 1.4 conserved membrane protein of unknown function compare
PP_1795 +0.4 2.7 conserved protein of unknown function compare
PP_2083 +0.4 1.5 putative Lipase compare
PP_4196 +0.4 0.7 conserved exported protein of unknown function compare
PP_4447 +0.4 2.0 conserved protein of unknown function compare
PP_5227 +0.4 2.0 diaminopimelate decarboxylase compare
PP_1004 +0.4 0.9 conserved protein of unknown function compare
PP_0294 +0.4 1.8 Choline / carnitine / glycine betaine ABC transporter, ATPase component (from data) compare
PP_1633 +0.4 1.2 conserved exported protein of unknown function compare
PP_0351 +0.4 2.2 putative Transmembrane sensor protein compare
PP_1631 +0.4 1.9 conserved protein of unknown function compare
PP_5365 +0.4 2.7 putative fatty acid methyltransferase compare
PP_0905 +0.4 1.0 conserved exported protein of unknown function compare
PP_3519 +0.4 0.5 putative Lipoprotein compare
PP_0750 +0.4 2.0 conserved protein of unknown function compare
PP_t49 +0.4 1.3 tRNA-Met compare
PP_4624 +0.4 2.3 putative hydrolase, alpha/beta fold family compare


Specific Phenotypes

None in this experiment

For Pseudomonas putida KT2440 in soil experiments

For soil Soil=PNNL_Prosser_PlotA_B_20191220; Sterility=nonsterile; Collection=outgrowth_in_LB; SoilTreatment=none; SoilTreatmentTime=144_hrs across organisms