Experiment set24IT071 for Pseudomonas putida KT2440

Compare to:

Soil=PNNL_Prosser_PlotA_B_20191220; Sterility=nonsterile; Collection=outgrowth_in_LB; SoilTreatment=none; SoilTreatmentTime=144_hrs

200 most important genes:

  gene name fitness t score description  
PP_1623 -6.7 -8.4 RNA polymerase, sigma S (sigma 38) factor compare
PP_0164 -6.3 -4.4 conserved protein of unknown function compare
PP_4943 -5.3 -3.7 putative Glycosyl transferase compare
PP_1779 -5.2 -10.5 Lipopolysaccharide ABC export system, ATP-binding protein compare
PP_1778 -4.9 -9.9 Lipopolysaccharide ABC export system, permease protein compare
PP_4008 -3.6 -9.7 ATP-dependent serine protease compare
PP_5114 -3.6 -3.7 putative adenine methyltransferase compare
PP_4058 -3.6 -12.8 1,4-alpha-glucan branching enzyme compare
PP_0547 -3.5 -6.3 UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl- meso-diaminopimelate ligase compare
PP_4902 -3.3 -4.4 Oligoribonuclease compare
PP_4337 -3.2 -8.3 chemotaxis response regulator protein-glutamate methylesterase of group 1 operon compare
PP_4394 -3.2 -6.3 flagella basal body P-ring formation protein compare
PP_4370 -3.1 -3.2 Flagellar hook-basal body complex protein FliE compare
PP_4361 -3.1 -7.8 Flagellar hook-length control protein FliK compare
PP_1198 -3.1 -4.0 transcriptional regulator, Cro/CI family (higA antitoxin like) compare
PP_4375 -3.0 -10.1 flagellar chaperone, inhibits premature FliC assembly compare
PP_4376 -3.0 -12.6 flagellar filament capping protein compare
PP_4384 -2.9 -9.8 Flagellar L-ring protein compare
PP_1734 -2.9 -6.5 Probable septum site-determining protein MinC compare
PP_4726 -2.9 -3.9 Chaperone protein DnaJ compare
PP_4994 -2.9 -6.9 conserved protein of unknown function compare
PP_5327 -2.8 -3.4 putative phosphate ABC transporter, permease subunit compare
PP_4332 -2.8 -8.4 Chemotaxis protein CheW compare
PP_4378 -2.8 -14.7 flagellin, filament structural protein compare
PP_4396 -2.8 -6.2 conserved protein of unknown function compare
PP_0948 -2.7 -2.4 Phosphocarrier protein HPr compare
PP_4391 -2.7 -6.5 flagellar basal-body rod protein FlgB compare
PP_4355 -2.6 -2.2 flagellar export apparatus subunit compare
PP_4353 -2.6 -9.4 Flagellar biosynthetic protein fliR compare
PP_4340 -2.6 -6.4 response regulator for chemotactic signal transduction compare
PP_4388 -2.6 -12.4 Flagellar hook protein FlgE compare
PP_4354 -2.6 -3.8 flagellar export apparatus subunit compare
PP_4341 -2.6 -8.5 RNA polymerase sigma 28 (sigma F) factor for class III flagellar operons compare
PP_4366 -2.6 -12.2 flagellum-specific ATP synthase compare
PP_4390 -2.6 -9.8 flagellar basal-body rod protein FlgC compare
PP_4344 -2.6 -10.7 flagellar export pore protein compare
PP_4358 -2.5 -7.9 flagellar synthesis, switching and energizing component compare
PP_4352 -2.5 -13.0 flagellin export apparatus, substrate specificity protein compare
PP_4369 -2.5 -8.0 Flagellar M-ring protein compare
PP_0406 -2.5 -3.4 Nucleotidyltransferase family protein compare
PP_4380 -2.5 -12.2 Flagellar hook-associated protein FlgL compare
PP_4367 -2.5 -4.2 Flagellar assembly protein FliH compare
PP_1898 -2.4 -4.6 MotA/TolQ/ExbB proton channel family protein compare
PP_5145 -2.4 -18.2 phosphoenolpyruvate-dependent regulator (with NPR and NTR proteins) compare
PP_4385 -2.4 -4.9 flagellar basal-body rod protein FlgG compare
PP_5289 -2.4 -3.6 Acetylglutamate kinase compare
PP_4804 -2.3 -1.6 RlpA-like lipoprotein compare
PP_4392 -2.3 -10.0 chemotaxis protein methyltransferase compare
PP_4471 -2.3 -5.2 Magnesium transporter compare
PP_4381 -2.3 -10.6 Flagellar hook-associated protein FlgK compare
PP_4365 -2.3 -6.8 Flagellar protein FliJ compare
PP_4338 -2.3 -9.1 Chemotaxis histidine kinase CheA compare
PP_4386 -2.3 -4.7 flagellar basal-body rod protein FlgF compare
PP_4356 -2.2 -3.1 Flagellar protein FliO compare
PP_1733 -2.2 -3.0 membrane ATPase of the MinC-MinD-MinE system compare
PP_4253 -2.2 -3.2 cytochrome c oxidase subunit, cbb3-type compare
PP_4129 -2.2 -3.3 NADH:ubiquinone oxidoreductase, membrane subunit L compare
PP_3484 -2.2 -2.9 Response regulator receiver protein compare
PP_2378 -2.1 -3.2 Fe/S biogenesis protein NfuA compare
PP_4368 -2.1 -4.8 flagellar motor switch protein compare
PP_0065 -2.1 -4.2 NAD-binding component of TrK potassium transporter compare
PP_4389 -2.1 -6.7 Flagellar basal-body rod modification protein FlgD compare
PP_5185 -2.0 -5.8 acetylglutamate kinase-like protein (regulatory domain)/amino acid N-acetyltransferase compare
PP_4004 -2.0 -5.1 DNA translocase FtsK compare
PP_4131 -2.0 -5.0 NADH-quinone oxidoreductase subunit N compare
PP_4964 -2.0 -3.7 D-erythrose 4-phosphate dehydrogenase compare
PP_3821 -1.9 -7.7 UTP-glucose-1-phosphate uridylyltransferase compare
PP_0846 -1.9 -1.2 DnaK-like molecular chaperone specific for IscU compare
PP_4382 -1.9 -7.4 Peptidoglycan hydrolase FlgJ compare
PP_1428 -1.9 -2.0 Sigma factor AlgU negative regulatory protein compare
PP_2145 -1.9 -3.5 beta-N-acetylglucosaminidase compare
PP_5338 -1.9 -3.9 aspartate ammonia-lyase compare
PP_4120 -1.9 -3.7 NADH-quinone oxidoreductase subunit B compare
PP_3649 -1.8 -4.5 Transcriptional regulator, GntR family compare
PP_4342 -1.8 -3.2 flagellar synthesis regulator, putative ATPase compare
PP_0789 -1.8 -5.3 N-acetyl-anhydromuramyl-L-alanine-amidase compare
PP_0949 -1.8 -5.2 putative ATP-binding protein UPF0042 compare
PP_0435 -1.7 -6.7 Peptidase, M23/M37 family compare
PP_0184 -1.7 -4.7 Argininosuccinate lyase compare
PP_4383 -1.7 -5.2 Flagellar P-ring protein compare
PP_4143 -1.7 -4.0 conserved protein of unknown function compare
PP_0218 -1.7 -8.6 Sensory box protein compare
PP_4124 -1.6 -3.6 NADH-quinone oxidoreductase subunit G compare
PP_1232 -1.6 -7.8 conserved exported protein of unknown function compare
PP_4941 -1.6 -6.3 conserved exported protein of unknown function compare
PP_1764 -1.6 -3.0 Phosphoglycolate phosphatase 2 compare
PP_4895 -1.6 -2.6 tRNA dimethylallyltransferase compare
PP_4891 -1.6 -4.7 integral membrane ATP-dependent zinc metallopeptidase / HflK-HflC complex compare
PP_4262 -1.6 -2.6 Cytochrome oxidase maturation protein, cbb3-type compare
PP_2433 -1.6 -2.4 conserved protein of unknown function compare
PP_1319 -1.5 -4.2 Ubiquinol--cytochrome c reductase, cytochrome c1 compare
PP_4379 -1.5 -3.2 Beta-ketoacyl-acyl-carrier-protein synthase I compare
PP_2302 -1.5 -5.3 DNA-binding, ATP-dependent protease compare
PP_1088 -1.5 -6.9 Argininosuccinate synthase compare
PP_4343 -1.5 -3.5 Flagellar biosynthesis protein FlhF compare
PP_1322 -1.5 -2.4 putative Lipoprotein compare
PP_4942 -1.4 -2.1 conserved protein of unknown function compare
PP_1097 -1.4 -1.7 Methionine--tRNA ligase compare
PP_1217 -1.4 -3.6 Holliday junction ATP-dependent DNA helicase RuvB compare
PP_1598 -1.4 -4.3 regulatory intramembrane protein RIP zinc protease compare
PP_0951 -1.4 -5.9 Ribosome hibernation promoting factor compare
PP_5084 -1.4 -6.2 penicillin-insensitive transglycosylase/penicillin-sensitive transpeptidase compare
PP_4993 -1.4 -3.7 Glutathione synthetase compare
PP_2253 -1.4 -2.9 Transcriptional regulator, GntR family compare
PP_3946 -1.4 -1.7 HTH-type transcriptional repressor NicR compare
PP_2029 -1.4 -2.6 von Willebrand factor type A domain protein compare
PP_4696 -1.4 -3.3 Nitrogen regulation protein NR(I) compare
PP_4121 -1.4 -3.7 NADH-quinone oxidoreductase subunit C/D compare
PP_1216 -1.4 -1.5 Holliday junction ATP-dependent DNA helicase RuvA compare
PP_5232 -1.4 -2.5 conserved protein of unknown function compare
PP_0396 -1.4 -8.3 conserved protein of unknown function compare
PP_4940 -1.4 -6.3 Putative glycosyltransferase compare
PP_0888 -1.3 -2.7 Photosynthetic apparatus regulatory protein RegA compare
PP_5225 -1.3 -1.8 frataxin compare
PP_0082 -1.3 -3.3 tryptophan synthase alpha chain compare
PP_4944 -1.3 -2.7 Carbamoyltransferase compare
PP_4251 -1.3 -3.6 cytochrome c oxidase subunit, cbb3-type compare
PP_2337 -1.3 -2.0 aconitate isomerase compare
PP_1036 -1.3 -6.5 membrane-bound lytic murein transglycosylase F compare
PP_4336 -1.3 -4.9 flagellar motor rotation protein compare
PP_0395 -1.3 -7.5 putative type IV piliation protein compare
PP_1906 -1.3 -2.6 ribosomal large subunit pseudouridine synthase C compare
PP_0397 -1.3 -8.8 protein kinase compare
PP_3916 -1.3 -3.7 conserved protein of unknown function compare
PP_4333 -1.3 -4.0 CheW domain protein compare
PP_5028 -1.3 -2.9 proline iminopeptidase compare
PP_5295 -1.3 -1.6 conserved protein of unknown function compare
PP_5748 -1.2 -1.8 cytochrome c heme lyase subunit compare
PP_1763 -1.2 -2.7 putative oxidoreductase compare
PP_5329 -1.2 -1.7 putative phosphate ABC transporter, periplasmic phosphate-binding protein compare
PP_0995 -1.2 -5.1 conserved membrane protein of unknown function compare
PP_0405 -1.2 -5.3 conserved protein of unknown function compare
PP_5090 -1.2 -2.4 putative cell division protein compare
PP_4263 -1.2 -2.1 putative membrane-bounded cytochrome biogenesis cycZ-like domain, copper tolerance protein compare
PP_4122 -1.2 -1.5 proton-pumping NADH:ubiquinone oxidoreductase, respiratory complex I, subunit E compare
PP_2217 -1.1 -2.0 enoyl-CoA hydratase compare
PP_2153 -1.1 -4.2 conserved protein of unknown function compare
PP_5445 -1.1 -2.6 conserved protein of unknown function compare
PP_5279 -1.1 -2.6 conserved protein of unknown function compare
PP_0191 -1.1 -3.4 Transcriptional regulatory protein AlgQ compare
PP_1028 -1.1 -3.5 Transcriptional regulator, LysR family compare
PP_1355 -1.1 -6.4 Muropeptide permease AmpG compare
PP_4556 -1.1 -3.5 conserved protein of unknown function compare
PP_4334 -1.1 -5.2 ParA family protein compare
PP_2160 -1.1 -3.4 NADPH-dependent 7-cyano-7-deazaguanine reductase compare
PP_4470 -1.1 -2.9 putative transcriptional regulator (Arc domain-containing) compare
PP_1999 -1.1 -1.4 membrane protein required for colicin V production compare
PP_0673 -1.1 -1.4 conserved protein of unknown function compare
PP_1493 -1.1 -1.8 chemotaxis response regulator protein-glutamate methylesterase of group 3 operon compare
PP_3239 -1.1 -1.9 putative cointegrate resolution protein T Tn4652 compare
PP_5350 -1.1 -2.6 Transcriptional regulator, RpiR family compare
PP_4223 -1.1 -2.2 diaminobutyrate-2-oxoglutarate transaminase compare
PP_2794 -1.0 -2.3 Oxidoreductase, short chain dehydrogenase/reductase family compare
PP_2214 -1.0 -3.4 3-hydroxyacyl-CoA dehydrogenase type-2 compare
PP_0914 -1.0 -5.8 GGDEF domain protein compare
PP_5583 -1.0 -1.3 conserved protein of unknown function compare
PP_4213 -1.0 -1.9 putative dipeptidase compare
PP_2903 -1.0 -2.1 peptidyl-prolyl cis-trans isomerase B (rotamase B) compare
PP_1087 -1.0 -4.1 Outer membrane protein, OmpA family compare
PP_5045 -1.0 -2.6 tRNA sulfurtransferase compare
PP_3770 -1.0 -2.0 conserved protein of unknown function compare
PP_4335 -1.0 -4.7 flagellar motor protein compare
PP_5502 -1.0 -2.6 ribosome modulation factor compare
PP_4505 -1.0 -4.5 Sensor histidine kinase compare
PP_1066 -1.0 -2.1 C4-dicarboxylate transport transcriptional regulatory protein compare
PP_0957 -1.0 -2.0 D-arabinose 5-phosphate isomerase compare
PP_4204 -1.0 -2.4 antitoxin of the type II toxin-antitoxin MqsRA system and DNA-binding transcriptional repressor compare
PP_1994 -1.0 -1.5 tRNA pseudouridine (38-40)synthase compare
PP_5310 -1.0 -4.2 junction-specific ATP-dependent DNA helicase compare
PP_2847 -1.0 -1.6 Urease accessory protein UreJ compare
PP_0123 -1.0 -5.0 DNA polymerase I, 5 compare
PP_5146 -0.9 -5.2 RNA pyrophosphohydrolase compare
PP_1079 -0.9 -4.4 Ornithine carbamoyltransferase compare
PP_2414 -0.9 -1.1 conserved exported protein of unknown function compare
PP_4803 -0.9 -5.0 D-alanyl-D-alanine carboxypeptidase compare
PP_2336 -0.9 -2.1 aconitate hydratase 1 compare
PP_5706 -0.9 -1.7 Sec translocation complex - SecG subunit compare
PP_5546 -0.9 -2.0 conserved protein of unknown function compare
PP_4364 -0.9 -2.3 putative Anti-sigma F factor antagonist compare
PP_2820 -0.9 -1.7 HTH-type transcriptional regulator nfxB compare
PP_4828 -0.9 -1.4 Precorrin-8X methylmutase compare
PP_4700 -0.9 -1.2 pantothenate synthetase compare
PP_4785 -0.9 -4.3 conserved exported protein of unknown function compare
PP_4720 -0.9 -1.7 putative RNA binding protein compare
PP_1317 -0.9 -2.4 Ubiquinol-cytochrome c reductase iron-sulfur subunit compare
PP_4261 -0.9 -2.9 cation-transporting P-type ATPase compare
PP_4528 -0.9 -1.8 conserved protein of unknown function compare
PP_4359 -0.9 -2.8 Flagellar protein FliL compare
PP_5217 -0.9 -6.4 Polyphosphate kinase compare
PP_3201 -0.9 -2.1 BNR domain protein compare
PP_4880 -0.9 -5.0 exoribonuclease R compare
PP_1404 -0.9 -2.3 conserved protein of unknown function compare
PP_3614 -0.9 -2.8 conserved membrane protein of unknown function compare
PP_1804 -0.8 -4.4 Glycosyl transferase WbpL compare
PP_2835 -0.8 -1.9 putative oxidoreductase compare
PP_4620 -0.8 -4.3 Fumarylacetoacetase compare
PP_3295 -0.8 -2.9 YeeE/YedE family protein compare
PP_5328 -0.8 -1.6 putative phosphate transport system permease protein compare
PP_1318 -0.8 -2.7 Cytochrome b compare
PP_2402 -0.8 -1.8 putative Sensor histidine kinase compare


Specific Phenotypes

None in this experiment

For Pseudomonas putida KT2440 in soil experiments

For soil Soil=PNNL_Prosser_PlotA_B_20191220; Sterility=nonsterile; Collection=outgrowth_in_LB; SoilTreatment=none; SoilTreatmentTime=144_hrs across organisms