Experiment set24IT070 for Pseudomonas putida KT2440

Compare to:

Soil=PNNL_Prosser_PlotA_B_20191220; Sterility=nonsterile; Collection=outgrowth_in_LB; SoilTreatment=none; SoilTreatmentTime=144_hrs

200 most important genes:

  gene name fitness t score description  
PP_1623 -6.5 -8.5 RNA polymerase, sigma S (sigma 38) factor compare
PP_0164 -6.1 -4.2 conserved protein of unknown function compare
PP_1778 -4.3 -8.0 Lipopolysaccharide ABC export system, permease protein compare
PP_0406 -4.0 -2.8 Nucleotidyltransferase family protein compare
PP_0547 -3.8 -5.8 UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl- meso-diaminopimelate ligase compare
PP_1198 -3.7 -5.4 transcriptional regulator, Cro/CI family (higA antitoxin like) compare
PP_2145 -3.6 -4.3 beta-N-acetylglucosaminidase compare
PP_1734 -3.6 -5.5 Probable septum site-determining protein MinC compare
PP_4058 -3.5 -12.7 1,4-alpha-glucan branching enzyme compare
PP_4008 -3.4 -9.4 ATP-dependent serine protease compare
PP_1779 -3.3 -7.8 Lipopolysaccharide ABC export system, ATP-binding protein compare
PP_4375 -3.2 -10.3 flagellar chaperone, inhibits premature FliC assembly compare
PP_1215 -3.0 -2.2 Crossover junction endodeoxyribonuclease RuvC compare
PP_4122 -3.0 -2.1 proton-pumping NADH:ubiquinone oxidoreductase, respiratory complex I, subunit E compare
PP_5289 -3.0 -4.3 Acetylglutamate kinase compare
PP_0184 -2.9 -6.2 Argininosuccinate lyase compare
PP_4354 -2.9 -3.6 flagellar export apparatus subunit compare
PP_1493 -2.9 -3.9 chemotaxis response regulator protein-glutamate methylesterase of group 3 operon compare
PP_1733 -2.9 -4.7 membrane ATPase of the MinC-MinD-MinE system compare
PP_4383 -2.9 -7.9 Flagellar P-ring protein compare
PP_4344 -2.5 -10.9 flagellar export pore protein compare
PP_4942 -2.5 -3.3 conserved protein of unknown function compare
PP_4726 -2.5 -3.4 Chaperone protein DnaJ compare
PP_4369 -2.5 -8.1 Flagellar M-ring protein compare
PP_5185 -2.3 -4.8 acetylglutamate kinase-like protein (regulatory domain)/amino acid N-acetyltransferase compare
PP_4386 -2.3 -6.4 flagellar basal-body rod protein FlgF compare
PP_4342 -2.3 -4.1 flagellar synthesis regulator, putative ATPase compare
PP_0397 -2.3 -12.9 protein kinase compare
PP_4943 -2.2 -2.8 putative Glycosyl transferase compare
PP_0951 -2.2 -7.4 Ribosome hibernation promoting factor compare
PP_5095 -2.2 -1.5 pyrroline-5-carboxylate reductase compare
PP_4368 -2.2 -6.3 flagellar motor switch protein compare
PP_4366 -2.2 -11.8 flagellum-specific ATP synthase compare
PP_0396 -2.1 -11.1 conserved protein of unknown function compare
PP_2217 -2.1 -2.7 enoyl-CoA hydratase compare
PP_4394 -2.1 -6.0 flagella basal body P-ring formation protein compare
PP_4340 -2.1 -4.5 response regulator for chemotactic signal transduction compare
PP_4358 -2.1 -5.7 flagellar synthesis, switching and energizing component compare
PP_5502 -2.0 -6.3 ribosome modulation factor compare
PP_4098 -2.0 -3.0 UvrABC system protein C compare
PP_4361 -2.0 -5.8 Flagellar hook-length control protein FliK compare
PP_0673 -2.0 -2.1 conserved protein of unknown function compare
PP_4356 -2.0 -3.2 Flagellar protein FliO compare
PP_4378 -1.9 -10.8 flagellin, filament structural protein compare
PP_4367 -1.9 -4.8 Flagellar assembly protein FliH compare
PP_3649 -1.9 -5.2 Transcriptional regulator, GntR family compare
PP_4341 -1.9 -7.2 RNA polymerase sigma 28 (sigma F) factor for class III flagellar operons compare
PP_4353 -1.9 -5.3 Flagellar biosynthetic protein fliR compare
PP_0789 -1.9 -4.4 N-acetyl-anhydromuramyl-L-alanine-amidase compare
PP_5145 -1.9 -12.4 phosphoenolpyruvate-dependent regulator (with NPR and NTR proteins) compare
PP_4379 -1.9 -3.8 Beta-ketoacyl-acyl-carrier-protein synthase I compare
PP_4338 -1.9 -6.5 Chemotaxis histidine kinase CheA compare
PP_1319 -1.9 -5.0 Ubiquinol--cytochrome c reductase, cytochrome c1 compare
PP_4380 -1.8 -10.8 Flagellar hook-associated protein FlgL compare
PP_4381 -1.8 -10.1 Flagellar hook-associated protein FlgK compare
PP_5327 -1.8 -3.4 putative phosphate ABC transporter, permease subunit compare
PP_1088 -1.8 -7.9 Argininosuccinate synthase compare
PP_4391 -1.8 -8.9 flagellar basal-body rod protein FlgB compare
PP_0395 -1.8 -10.0 putative type IV piliation protein compare
PP_4376 -1.8 -8.7 flagellar filament capping protein compare
PP_4891 -1.8 -4.7 integral membrane ATP-dependent zinc metallopeptidase / HflK-HflC complex compare
PP_4370 -1.8 -5.3 Flagellar hook-basal body complex protein FliE compare
PP_4124 -1.8 -3.7 NADH-quinone oxidoreductase subunit G compare
PP_0846 -1.8 -1.4 DnaK-like molecular chaperone specific for IscU compare
PP_4384 -1.8 -9.4 Flagellar L-ring protein compare
PP_0218 -1.8 -6.3 Sensory box protein compare
PP_4365 -1.7 -5.4 Flagellar protein FliJ compare
PP_4332 -1.7 -3.2 Chemotaxis protein CheW compare
PP_4389 -1.7 -6.2 Flagellar basal-body rod modification protein FlgD compare
PP_4909 -1.7 -6.0 phosphoserine phosphatase compare
PP_4262 -1.7 -2.6 Cytochrome oxidase maturation protein, cbb3-type compare
PP_1898 -1.7 -1.8 MotA/TolQ/ExbB proton channel family protein compare
PP_4253 -1.7 -2.7 cytochrome c oxidase subunit, cbb3-type compare
PP_4352 -1.6 -8.4 flagellin export apparatus, substrate specificity protein compare
PP_5216 -1.6 -2.2 exopolyphosphatase compare
PP_4382 -1.6 -6.9 Peptidoglycan hydrolase FlgJ compare
PP_4337 -1.6 -5.9 chemotaxis response regulator protein-glutamate methylesterase of group 1 operon compare
PP_2153 -1.6 -4.8 conserved protein of unknown function compare
PP_1036 -1.6 -6.7 membrane-bound lytic murein transglycosylase F compare
PP_4696 -1.6 -4.4 Nitrogen regulation protein NR(I) compare
PP_4390 -1.6 -5.9 flagellar basal-body rod protein FlgC compare
PP_0405 -1.6 -6.9 conserved protein of unknown function compare
PP_4917 -1.6 -3.7 3',5'-cyclic-nucleotide phosphodiesterase compare
PP_0123 -1.6 -7.5 DNA polymerase I, 5 compare
PP_1999 -1.6 -1.9 membrane protein required for colicin V production compare
PP_2121 -1.6 -1.7 putative Lipoprotein compare
PP_5644 -1.6 -3.0 conserved membrane protein of unknown function compare
PP_4471 -1.5 -4.9 Magnesium transporter compare
PP_4388 -1.5 -9.3 Flagellar hook protein FlgE compare
PP_4944 -1.5 -3.4 Carbamoyltransferase compare
PP_4895 -1.5 -2.0 tRNA dimethylallyltransferase compare
PP_4396 -1.5 -2.9 conserved protein of unknown function compare
PP_5230 -1.5 -3.1 Tyrosine recombinase XerC compare
PP_4385 -1.5 -6.2 flagellar basal-body rod protein FlgG compare
PP_3484 -1.5 -2.3 Response regulator receiver protein compare
PP_4261 -1.5 -3.6 cation-transporting P-type ATPase compare
PP_4964 -1.5 -2.9 D-erythrose 4-phosphate dehydrogenase compare
PP_0065 -1.4 -2.4 NAD-binding component of TrK potassium transporter compare
PP_3946 -1.4 -1.8 HTH-type transcriptional repressor NicR compare
PP_3539 -1.4 -3.3 putative Transcriptional regulator compare
PP_1055 -1.4 -2.1 Type II secretion pathway protein GspN compare
PP_5329 -1.4 -0.9 putative phosphate ABC transporter, periplasmic phosphate-binding protein compare
PP_4804 -1.4 -1.8 RlpA-like lipoprotein compare
PP_t12 -1.4 -1.1 tRNA-Thr compare
PP_2337 -1.3 -1.8 aconitate isomerase compare
PP_4131 -1.3 -4.3 NADH-quinone oxidoreductase subunit N compare
PP_2903 -1.3 -2.1 peptidyl-prolyl cis-trans isomerase B (rotamase B) compare
PP_4902 -1.3 -2.1 Oligoribonuclease compare
PP_4129 -1.3 -2.8 NADH:ubiquinone oxidoreductase, membrane subunit L compare
PP_4392 -1.3 -6.8 chemotaxis protein methyltransferase compare
PP_0949 -1.3 -3.5 putative ATP-binding protein UPF0042 compare
PP_2433 -1.3 -3.5 conserved protein of unknown function compare
PP_4994 -1.3 -1.8 conserved protein of unknown function compare
PP_4143 -1.3 -3.4 conserved protein of unknown function compare
PP_5652 -1.3 -1.6 conserved protein of unknown function, phage origin compare
PP_0948 -1.3 -1.7 Phosphocarrier protein HPr compare
PP_4880 -1.3 -6.4 exoribonuclease R compare
PP_4120 -1.2 -2.5 NADH-quinone oxidoreductase subunit B compare
PP_1216 -1.2 -1.9 Holliday junction ATP-dependent DNA helicase RuvA compare
PP_3924 -1.2 -1.7 conserved protein of unknown function compare
PP_0888 -1.2 -2.6 Photosynthetic apparatus regulatory protein RegA compare
PP_4482 -1.2 -2.3 Transcriptional regulator, AraC family compare
PP_0593 -1.2 -1.0 putative ribosome-binding factor compare
PP_4296 -1.2 -1.2 conserved exported protein of unknown function compare
PP_2668 -1.2 -1.1 ABC efflux transporter, ATP-binding protein compare
PP_0435 -1.2 -5.0 Peptidase, M23/M37 family compare
PP_4121 -1.2 -3.2 NADH-quinone oxidoreductase subunit C/D compare
PP_2088 -1.2 -2.0 RNA polymerase sigma factor SigX compare
PP_5393 -1.1 -1.5 putative metal-binding chaperone compare
PP_4808 -1.1 -1.2 23S rRNA m3psi1915 methyltransferase compare
PP_2203 -1.1 -2.0 conserved protein of unknown function compare
PP_0630 -1.1 -1.4 DNA gyrase inhibitor YacG compare
PP_1713 -1.1 -1.9 Transcriptional regulator PcaQ compare
PP_0735 -1.1 -1.5 molybdopterin-synthase adenylyltransferase compare
PP_5706 -1.1 -1.8 Sec translocation complex - SecG subunit compare
PP_5146 -1.1 -4.6 RNA pyrophosphohydrolase compare
PP_2820 -1.1 -1.8 HTH-type transcriptional regulator nfxB compare
PP_1528 -1.1 -1.4 conserved protein of unknown function compare
PP_2160 -1.1 -3.1 NADPH-dependent 7-cyano-7-deazaguanine reductase compare
PP_2027 -1.1 -4.2 conserved exported protein of unknown function compare
PP_2414 -1.1 -1.9 conserved exported protein of unknown function compare
PP_1702 -1.1 -2.6 Recombination-associated protein RdgC compare
PP_3821 -1.1 -5.6 UTP-glucose-1-phosphate uridylyltransferase compare
PP_1318 -1.1 -3.5 Cytochrome b compare
PP_4364 -1.1 -2.2 putative Anti-sigma F factor antagonist compare
PP_1716 -1.0 -2.2 Transcriptional regulator, Cro/CI family compare
PP_5350 -1.0 -2.4 Transcriptional regulator, RpiR family compare
PP_0246 -1.0 -2.3 two-component system DNA-binding response transcriptional dual regulator compare
PP_5028 -1.0 -2.6 proline iminopeptidase compare
PP_4848 -1.0 -2.5 Curved DNA-binding protein compare
PP_5337 -1.0 -3.8 LysR family transcriptional regulator compare
PP_1217 -1.0 -3.0 Holliday junction ATP-dependent DNA helicase RuvB compare
PP_2144 -1.0 -2.9 Transcriptional regulator, TetR family compare
PP_4988 -1.0 -3.7 signal transduction histidine kinase CheA/CheY-like receiver compare
PP_1808 -1.0 -3.2 glucose-6-phosphate isomerase compare
PP_1355 -1.0 -5.0 Muropeptide permease AmpG compare
PP_0937 -1.0 -3.2 endoribonuclease G (RNAse G) compare
PP_0872 -1.0 -3.4 Peptide chain release factor 3 compare
PP_4720 -1.0 -1.7 putative RNA binding protein compare
PP_4505 -1.0 -4.0 Sensor histidine kinase compare
PP_4335 -1.0 -4.9 flagellar motor protein compare
PP_1232 -1.0 -4.2 conserved exported protein of unknown function compare
PP_4824 -1.0 -4.3 Sensor histidine kinase/response regulator compare
PP_3105 -1.0 -1.0 conserved membrane protein of unknown function compare
PP_4941 -1.0 -3.1 conserved exported protein of unknown function compare
PP_5014 -0.9 -1.8 Phosphoribosyl-AMP cyclohydrolase compare
PP_4470 -0.9 -2.8 putative transcriptional regulator (Arc domain-containing) compare
PP_1986 -0.9 -2.2 3-isopropylmalate dehydratase small subunit compare
PP_1087 -0.9 -4.3 Outer membrane protein, OmpA family compare
PP_5045 -0.9 -2.5 tRNA sulfurtransferase compare
PP_4126 -0.9 -0.9 NADH-quinone oxidoreductase subunit I compare
PP_0082 -0.9 -2.9 tryptophan synthase alpha chain compare
PP_4961 -0.9 -1.1 putative Lipoprotein compare
PP_4359 -0.9 -3.1 Flagellar protein FliL compare
PP_0914 -0.9 -4.7 GGDEF domain protein compare
PP_0254 -0.9 -2.5 conserved protein of unknown function compare
PP_4546 -0.9 -2.5 ATP-dependent helicase HrpA compare
PP_5445 -0.9 -2.1 conserved protein of unknown function compare
PP_5507 -0.9 -2.0 protein of unknown function compare
PP_5217 -0.9 -6.1 Polyphosphate kinase compare
PP_0642 -0.9 -3.3 conserved membrane protein of unknown function compare
PP_1994 -0.9 -1.3 tRNA pseudouridine (38-40)synthase compare
PP_4004 -0.9 -2.9 DNA translocase FtsK compare
PP_4556 -0.9 -2.1 conserved protein of unknown function compare
PP_0833 -0.9 -0.6 queuine tRNA-ribosyltransferase compare
PP_5423 -0.9 -1.9 conserved membrane protein of unknown function compare
PP_4620 -0.9 -4.6 Fumarylacetoacetase compare
PP_2396 -0.8 -3.3 conserved exported protein of unknown function compare
PP_1629 -0.8 -3.1 Protein RecA compare
PP_0801 -0.8 -1.1 conserved exported protein of unknown function compare
PP_2077 -0.8 -3.9 diaminopimelate decarboxylase compare
PP_5114 -0.8 -1.3 putative adenine methyltransferase compare
PP_4333 -0.8 -3.1 CheW domain protein compare
PP_0978 -0.8 -2.4 conserved protein of unknown function compare
PP_4066 -0.8 -2.5 methylglutaconyl-CoA hydratase compare
PP_4334 -0.8 -4.6 ParA family protein compare
PP_2373 -0.8 -2.1 conserved protein of unknown function compare
PP_4803 -0.8 -4.3 D-alanyl-D-alanine carboxypeptidase compare
PP_t29 -0.8 -1.6 tRNA-Ala compare
PP_2462 -0.8 -2.0 conserved protein of unknown function compare


Specific Phenotypes

None in this experiment

For Pseudomonas putida KT2440 in soil experiments

For soil Soil=PNNL_Prosser_PlotA_B_20191220; Sterility=nonsterile; Collection=outgrowth_in_LB; SoilTreatment=none; SoilTreatmentTime=144_hrs across organisms