Experiment set24IT070 for Pseudomonas putida KT2440

Compare to:

Soil=PNNL_Prosser_PlotA_B_20191220; Sterility=nonsterile; Collection=outgrowth_in_LB; SoilTreatment=none; SoilTreatmentTime=144_hrs

200 most detrimental genes:

  gene name fitness t score description  
PP_1656 +2.8 9.7 ATP:GTP 3'-pyrophosphotransferase compare
PP_1650 +2.7 22.1 Sensor protein GacS compare
PP_4099 +2.6 18.7 two-componenent system BarA/UvrY - regulatory subunit compare
PP_1655 +2.4 5.7 23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD compare
PP_2322 +1.6 9.6 Major outer membrane lipoprotein compare
PP_3312 +1.1 1.9 putative Heat shock protein compare
PP_2309 +1.1 2.1 conserved protein of unknown function compare
PP_4561 +1.1 1.6 stress response protein compare
PP_1562 +1.1 2.7 putative Phage terminase, small subunit compare
PP_2060 +1.1 3.3 DNA-binding transcriptional dual regulator - SoxR-reversible one-electron oxidation of its [2Fe-2S] cluster, NADPH-dependent compare
PP_4254 +1.1 2.7 conserved protein of unknown function compare
PP_2070 +1.1 2.2 Transcriptional regulator, AraC family compare
PP_4133 +1.0 1.9 Transcriptional regulator-related protein compare
PP_1269 +1.0 1.5 Universal stress protein family compare
PP_4268 +0.9 1.7 nucleoid-associated broad specificity regulator compare
PP_4171 +0.9 7.4 conserved exported protein of unknown function compare
PP_0195 +0.9 1.8 conserved protein of unknown function compare
PP_2530 +0.9 2.1 conserved protein of unknown function compare
PP_3398 +0.9 3.2 putative Curli fiber surface-exposed nucleator CsgB compare
PP_2087 +0.9 3.3 CmpX protein compare
PP_1654 +0.8 1.3 cysteine synthase B compare
PP_2899 +0.8 1.9 conserved exported protein of unknown function compare
PP_0025 +0.8 1.4 hypothetical protein compare
PP_3938 +0.8 2.4 conserved protein of unknown function compare
PP_2592 +0.8 3.4 Ferric siderophore ABC transporter, ATP-binding protein compare
PP_5528 +0.7 1.4 conserved protein of unknown function compare
PP_4314 +0.7 2.1 conserved protein of unknown function compare
PP_4273 +0.7 1.7 Transcriptional regulator, MerR family compare
PP_t64 +0.7 2.3 tRNA-Gly compare
PP_4246 +0.7 4.2 Periplasmic binding protein compare
PP_0274 +0.7 1.9 putative transcriptional regulator containing HTH domain compare
PP_2747 +0.7 1.2 conserved protein of unknown function compare
PP_1051 +0.7 2.0 Type II secretion pathway protein XcpV compare
PP_2388 +0.7 2.6 Transporter, LysE family compare
PP_0152 +0.7 1.4 conserved exported protein of unknown function compare
PP_0855 +0.7 1.8 conserved protein of unknown function compare
PP_0319 +0.7 1.2 conserved protein of unknown function compare
PP_3892 +0.7 1.1 conserved protein of unknown function compare
PP_1076 +0.7 2.0 aquaglyceroporin compare
PP_5546 +0.7 1.1 conserved protein of unknown function compare
PP_1605 +0.7 1.5 Ribonuclease HII compare
PP_1249 +0.6 2.6 conserved protein of unknown function, DUF4223 family compare
PP_1410 +0.6 1.3 conserved protein of unknown function compare
PP_5008 +0.6 0.7 Poly granule-associated protein compare
PP_4701 +0.6 0.9 glucose-6-phosphate isomerase compare
PP_2499 +0.6 1.1 conserved protein of unknown function compare
PP_0958 +0.6 2.3 phospholipid ABC transporter ATP-binding subunit compare
PP_2323 +0.6 3.2 conserved protein of unknown function compare
PP_5053 +0.6 2.8 Protein-export protein SecB compare
PP_3040 +0.6 1.4 Pyocin R2_PP, holin compare
PP_1000 +0.6 2.4 ornithine carbamoyltransferase, catabolic compare
PP_0905 +0.6 1.4 conserved exported protein of unknown function compare
PP_2511 +0.6 1.2 conserved protein of unknown function compare
PP_2633 +0.6 1.3 conserved protein of unknown function compare
PP_1054 +0.6 0.8 Type II secretion pathway protein XcpZ compare
PP_0893 +0.6 1.7 ThiJ/PfpI family protein compare
PP_0166 +0.6 4.3 HlyD family secretion protein compare
PP_5670 +0.6 2.8 conserved protein of unknown function compare
PP_0262 +0.6 2.4 conserved protein of unknown function compare
PP_0063 +0.6 2.2 putative Lipid A biosynthesis lauroyl acyltransferase compare
PP_5441 +0.6 1.3 protein of unknown function compare
PP_1663 +0.6 3.6 conserved exported protein of unknown function compare
PP_1774 +0.6 1.5 conserved exported protein of unknown function compare
PP_5674 +0.6 1.9 conserved protein of unknown function compare
PP_2970 +0.5 0.9 conserved exported protein of unknown function compare
PP_0618 +0.5 1.5 Branched-chain amino acid ABC transporter, permease protein compare
PP_3919 +0.5 2.4 conserved protein of unknown function compare
PP_5557 +0.5 1.7 protein of unknown function compare
PP_4874 +0.5 0.8 50S ribosomal protein L9 compare
PP_2441 +0.5 2.0 conserved protein of unknown function compare
PP_0880 +0.5 1.7 dipeptide ABC transporter - putative membrane subunit compare
PP_5678 +0.5 2.2 protein of unknown function compare
PP_5267 +0.5 1.3 putative cytochrome c5 compare
PP_4999 +0.5 0.3 dihydroorotase-like protein compare
PP_4957 +0.5 1.9 conserved protein of unknown function compare
PP_1299 +0.5 2.6 putative amino acid ABC transporter - membrane subunit compare
PP_3384 +0.5 1.3 gluconate 2-dehydrogenase gamma subunit compare
PP_3971 +0.5 0.5 conserved protein of unknown function compare
PP_4156 +0.5 1.2 Transcriptional regulator, LysR family compare
PP_1176 +0.5 1.1 conserved protein of unknown function compare
PP_0947 +0.5 2.3 conserved membrane protein of unknown function compare
PP_4387 +0.5 1.1 conserved exported protein of unknown function compare
PP_1691 +0.5 1.9 conserved protein of unknown function compare
PP_4799 +0.5 0.2 putative Muramoyltetrapeptide carboxypeptidase compare
PP_4180 +0.5 2.1 conserved protein of unknown function compare
PP_5661 +0.5 0.9 putative lipoprotein compare
PP_3449 +0.5 1.4 conserved exported protein of unknown function compare
PP_2581 +0.5 1.0 conserved protein of unknown function compare
PP_4850 +0.5 1.8 conserved membrane protein of unknown function compare
PP_3679 +0.5 2.4 conserved protein of unknown function compare
PP_4451 +0.5 2.3 conserved protein of unknown function compare
PP_1764 +0.5 1.1 Phosphoglycolate phosphatase 2 compare
PP_5311 +0.5 3.8 putative signal transduction protein compare
PP_0550 +0.5 2.3 conserved protein of unknown function compare
PP_4460 +0.5 2.2 Transcriptional regulator, LysR family compare
PP_2750 +0.5 1.3 putative Branched-chain amino acid ABC transporter, permease protein compare
PP_2210 +0.5 1.5 LysR family transcriptional regulator compare
PP_5684 +0.5 2.4 protein of unknown function compare
PP_4669 +0.5 1.9 OmpA family protein compare
PP_0425 +0.5 1.9 conserved protein of unknown function compare
PP_3906 +0.5 1.1 conserved protein of unknown function compare
PP_2868 +0.5 2.5 Transcriptional regulator, Cro/CI family compare
PP_5619 +0.5 1.9 protein of unknown function compare
PP_3441 +0.5 3.0 conserved protein of unknown function compare
PP_1186 +0.5 0.9 two component system DNA-binding transcriptional dual regulator compare
PP_2306 +0.5 1.5 conserved exported protein of unknown function compare
PP_0900 +0.5 2.2 PAP2 family protein compare
PP_3142 +0.5 2.2 putative Sugar transferase compare
PP_5191 +0.5 1.1 conserved exported protein of unknown function compare
PP_1468 +0.5 0.9 Tyrosine recombinase XerD compare
PP_1748 +0.5 2.1 conserved protein of unknown function compare
PP_2715 +0.5 1.4 ArsH protein compare
PP_3127 +0.5 2.6 putative Exopolysaccharide transport protein compare
PP_5711 +0.5 1.6 protein of unknown function compare
PP_0856 +0.5 0.5 conserved lipoprotein of unknown function compare
PP_0165 +0.5 3.9 GGDEF domain protein compare
PP_0293 +0.5 0.6 Imidazole glycerol phosphate synthase subunit HisF compare
PP_1922 +0.5 1.7 conserved protein of unknown function compare
PP_2229 +0.5 1.3 putative K(+)/H(+) antiporter subunit C compare
PP_1553 +0.5 0.8 conserved protein of unknown function compare
PP_3233 +0.4 1.2 transcriptional regulator with 4Fe-4S cluster, Crp/Fnr family compare
PP_3617 +0.4 1.8 conserved membrane protein of unknown function compare
PP_4452 +0.4 1.6 NAD/NADP octopine/nopaline dehydrogenase family protein compare
PP_3241 +0.4 0.7 conserved exported protein of unknown function compare
PP_2507 +0.4 2.1 Oxidoreductase, short-chain dehydrogenase/reductase family compare
PP_4228 +0.4 1.8 conserved protein of unknown function compare
PP_4609 +0.4 1.2 conserved membrane protein of unknown function compare
PP_2643 +0.4 1.9 aromatic acid chemoreceptor compare
PP_0210 +0.4 2.0 putative Phycobiliprotein compare
PP_0040 +0.4 1.5 hypothetical protein compare
PP_2386 +0.4 2.6 conserved protein of unknown function compare
PP_1441 +0.4 1.7 tRNA (cmo5U34)-methyltransferase compare
PP_1390 +0.4 1.1 conserved exported protein of unknown function compare
PP_5707 +0.4 1.2 conserved protein of unknown function compare
PP_4151 +0.4 1.4 Excisionase domain protein compare
PP_3904 +0.4 1.1 conserved protein of unknown function compare
PP_2720 +0.4 0.8 conserved protein of unknown function compare
PP_5548 +0.4 1.3 protein of unknown function compare
PP_3245 +0.4 1.1 conserved protein of unknown function compare
PP_2863 +0.4 1.1 conserved membrane protein of unknown function compare
PP_1926 +0.4 1.4 putative phosphotyrosine-protein phosphatase compare
PP_2320 +0.4 3.1 conserved exported protein of unknown function compare
PP_3140 +0.4 1.8 Glycosyl transferase, group 2 family protein compare
PP_3445 +0.4 1.9 conserved protein of unknown function compare
PP_1861 +0.4 2.3 Transcriptional regulator, LysR family compare
PP_5529 +0.4 1.2 putative epimerase compare
PP_3519 +0.4 0.6 putative Lipoprotein compare
PP_2277 +0.4 1.9 conserved protein of unknown function compare
PP_0685 +0.4 0.5 conserved protein of unknown function compare
PP_2132 +0.4 1.7 Universal stress protein compare
PP_0775 +0.4 0.7 conserved protein of unknown function compare
PP_5125 +0.4 2.1 Formamidopyrimidine-DNA glycosylase compare
PP_4214 +0.4 1.4 pyoverdine biosynthesis related protein compare
PP_3141 +0.4 2.2 Glycosyl transferase, WecB/TagA/CpsF family compare
PP_2327 +0.4 1.5 transcriptional dual regulator / CysB-O-acetyl-L-serine compare
PP_0782 +0.4 1.8 conserved protein of unknown function compare
PP_0167 +0.4 3.4 Toxin secretion ATP-binding protein compare
PP_2992 +0.4 2.0 conserved exported protein of unknown function compare
PP_4217 +0.4 3.6 outer membrane ferripyoverdine receptor FpvA, TonB-dependent compare
PP_2189 +0.4 1.6 conserved protein of unknown function compare
PP_0837 +0.4 1.9 putative regulator of flagellation compare
PP_3034 +0.4 0.9 putative Regulator protein compare
PP_4797 +0.4 0.6 conserved protein of unknown function compare
PP_0916 +0.4 1.2 Amino acid transporter LysE compare
PP_0999 +0.4 0.9 carbamate kinase compare
PP_2030 +0.4 0.4 conserved protein of unknown function compare
PP_4662 +0.4 1.6 conserved protein of unknown function compare
PP_4939 +0.4 2.2 conserved protein of unknown function compare
PP_1063 +0.4 2.1 DNA-binding transcriptional regulator, homocysteine-binding compare
PP_3676 +0.4 1.9 conserved protein of unknown function compare
PP_5SB +0.4 1.6 5S ribosomal RNA compare
PP_4982 +0.4 1.5 putative cytochrome b561, iron-regulated compare
PP_1211 +0.4 0.9 conserved protein of unknown function compare
PP_4519 +0.4 2.9 Agglutination protein compare
PP_1113 +0.4 2.7 Pyridoxal-phosphate dependent enzyme family protein compare
PP_2037 +0.4 1.9 putative Aldolase compare
PP_5659 +0.4 1.2 protein of unknown function compare
PP_4622 +0.4 1.3 Hmg transcriptional repressor compare
PP_2438 +0.4 2.0 putative alcaline-induced transporter compare
PP_0168 +0.4 3.4 putative surface adhesion protein compare
PP_5020 +0.4 1.9 putative methyl-accepting chemotaxis protein compare
PP_5362 +0.4 2.3 conserved exported protein of unknown function compare
PP_2826 +0.4 1.1 Transcriptional regulator MexT compare
PP_3589 +0.4 1.4 serine:H+ symport permease, threonine-insensitive compare
PP_5381 +0.4 1.1 hypothetical protein compare
PP_1568 +0.4 0.6 conserved protein of unknown function compare
PP_5628 +0.4 1.0 conserved protein of unknown function compare
PP_2107 +0.4 0.3 conserved protein of unknown function compare
PP_5176 +0.4 1.3 conserved protein of unknown function compare
PP_0945 +0.4 1.0 conserved protein of unknown function compare
PP_4706 +0.4 1.5 conserved protein of unknown function compare
PP_3423 +0.4 1.8 Type II secretion pathway protein XcpT compare
PP_1011 +0.4 2.2 glucokinase compare
PP_4313 +0.4 1.3 putative peptidylprolyl isomerase compare
PP_0639 +0.4 2.1 conserved protein of unknown function compare
PP_4410 +0.4 2.3 conserved protein of unknown function compare
PP_4398 +0.4 2.4 Major facilitator family transporter compare
PP_1391 +0.4 1.9 Transcriptional regulator, LysR family compare
PP_0505 +0.4 1.8 conserved protein of unknown function compare
PP_3591 +0.4 1.5 Delta 1-piperideine-2-carboxylate reductase compare


Specific Phenotypes

None in this experiment

For Pseudomonas putida KT2440 in soil experiments

For soil Soil=PNNL_Prosser_PlotA_B_20191220; Sterility=nonsterile; Collection=outgrowth_in_LB; SoilTreatment=none; SoilTreatmentTime=144_hrs across organisms