Experiment set24IT069 for Pseudomonas putida KT2440

Compare to:

Soil=PNNL_Prosser_PlotA_B_20191220; Sterility=sterile; Collection=outgrowth_in_LB; SoilTreatment=none; SoilTreatmentTime=144_hrs

200 most important genes:

  gene name fitness t score description  
PP_1623 -7.1 -11.1 RNA polymerase, sigma S (sigma 38) factor compare
PP_3484 -6.4 -6.2 Response regulator receiver protein compare
PP_0164 -5.4 -6.5 conserved protein of unknown function compare
PP_0760 -5.2 -5.1 conserved membrane protein of unknown function compare
PP_0951 -5.0 -9.6 Ribosome hibernation promoting factor compare
PP_4943 -5.0 -3.4 putative Glycosyl transferase compare
PP_1734 -4.2 -4.1 Probable septum site-determining protein MinC compare
PP_4354 -3.9 -4.4 flagellar export apparatus subunit compare
PP_5289 -3.9 -3.8 Acetylglutamate kinase compare
PP_5185 -3.8 -6.8 acetylglutamate kinase-like protein (regulatory domain)/amino acid N-acetyltransferase compare
PP_0395 -3.8 -15.5 putative type IV piliation protein compare
PP_4342 -3.7 -2.6 flagellar synthesis regulator, putative ATPase compare
PP_4004 -3.6 -7.1 DNA translocase FtsK compare
PP_4143 -3.6 -5.8 conserved protein of unknown function compare
PP_0290 -3.5 -8.7 Imidazole glycerol phosphate synthase subunit HisH compare
PP_5014 -3.5 -4.1 Phosphoribosyl-AMP cyclohydrolase compare
PP_0396 -3.5 -13.3 conserved protein of unknown function compare
PP_1779 -3.4 -7.0 Lipopolysaccharide ABC export system, ATP-binding protein compare
PP_4364 -3.4 -4.9 putative Anti-sigma F factor antagonist compare
PP_0184 -3.4 -5.1 Argininosuccinate lyase compare
PP_1088 -3.4 -10.7 Argininosuccinate synthase compare
PP_1898 -3.4 -3.4 MotA/TolQ/ExbB proton channel family protein compare
PP_0846 -3.2 -2.1 DnaK-like molecular chaperone specific for IscU compare
PP_2402 -3.1 -3.0 putative Sensor histidine kinase compare
PP_2327 -3.1 -6.2 transcriptional dual regulator / CysB-O-acetyl-L-serine compare
PP_3821 -3.0 -10.0 UTP-glucose-1-phosphate uridylyltransferase compare
PP_0293 -3.0 -2.2 Imidazole glycerol phosphate synthase subunit HisF compare
PP_4383 -3.0 -7.3 Flagellar P-ring protein compare
PP_1733 -2.9 -4.4 membrane ATPase of the MinC-MinD-MinE system compare
PP_0292 -2.9 -4.4 1-(5-phosphoribosyl)-5-((5-phosphoribosylamino)methylideneamino)imidazole-4-carboxamide isomerase (EC 5.3.1.16) (from data) compare
PP_4375 -2.9 -9.1 flagellar chaperone, inhibits premature FliC assembly compare
PP_4122 -2.9 -2.0 proton-pumping NADH:ubiquinone oxidoreductase, respiratory complex I, subunit E compare
PP_4994 -2.9 -4.0 conserved protein of unknown function compare
PP_3946 -2.9 -2.1 HTH-type transcriptional repressor NicR compare
PP_1198 -2.8 -3.7 transcriptional regulator, Cro/CI family (higA antitoxin like) compare
PP_5502 -2.8 -4.2 ribosome modulation factor compare
PP_0547 -2.8 -5.3 UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl- meso-diaminopimelate ligase compare
PP_0397 -2.8 -12.9 protein kinase compare
PP_1215 -2.8 -3.5 Crossover junction endodeoxyribonuclease RuvC compare
PP_1994 -2.8 -1.9 tRNA pseudouridine (38-40)synthase compare
PP_t12 -2.7 -1.5 tRNA-Thr compare
PP_4058 -2.7 -10.6 1,4-alpha-glucan branching enzyme compare
PP_4471 -2.6 -6.2 Magnesium transporter compare
PP_0289 -2.6 -7.0 Imidazoleglycerol-phosphate dehydratase compare
PP_4008 -2.5 -7.1 ATP-dependent serine protease compare
PP_4940 -2.5 -8.9 Putative glycosyltransferase compare
PP_0967 -2.5 -10.1 histidinol-phosphate aminotransferase (EC 2.6.1.9) (from data) compare
PP_5090 -2.4 -2.4 putative cell division protein compare
PP_1217 -2.4 -6.4 Holliday junction ATP-dependent DNA helicase RuvB compare
PP_5328 -2.4 -2.3 putative phosphate transport system permease protein compare
PP_5145 -2.4 -16.7 phosphoenolpyruvate-dependent regulator (with NPR and NTR proteins) compare
PP_4337 -2.3 -4.8 chemotaxis response regulator protein-glutamate methylesterase of group 1 operon compare
PP_4909 -2.3 -6.6 phosphoserine phosphatase compare
PP_4396 -2.3 -3.7 conserved protein of unknown function compare
PP_2862 -2.3 -7.0 Undecaprenyl-diphosphatase compare
PP_4129 -2.3 -2.2 NADH:ubiquinone oxidoreductase, membrane subunit L compare
PP_4696 -2.3 -5.1 Nitrogen regulation protein NR(I) compare
PP_4726 -2.3 -3.3 Chaperone protein DnaJ compare
PP_0948 -2.3 -2.1 Phosphocarrier protein HPr compare
PP_1319 -2.3 -6.3 Ubiquinol--cytochrome c reductase, cytochrome c1 compare
PP_4874 -2.3 -1.5 50S ribosomal protein L9 compare
PP_0966 -2.2 -7.6 Histidinol dehydrogenase compare
PP_0406 -2.2 -3.0 Nucleotidyltransferase family protein compare
PP_4365 -2.2 -5.3 Flagellar protein FliJ compare
PP_4131 -2.2 -4.3 NADH-quinone oxidoreductase subunit N compare
PP_4902 -2.2 -3.5 Oligoribonuclease compare
PP_4341 -2.2 -6.3 RNA polymerase sigma 28 (sigma F) factor for class III flagellar operons compare
PP_4895 -2.1 -1.5 tRNA dimethylallyltransferase compare
PP_0965 -2.1 -9.3 ATP phosphoribosyltransferase (EC 2.4.2.17) (from data) compare
PP_0153 -2.1 -2.2 hypothetical protein compare
PP_1778 -2.1 -4.0 Lipopolysaccharide ABC export system, permease protein compare
PP_4910 -2.1 -3.7 conserved protein of unknown function compare
PP_5095 -2.1 -1.4 pyrroline-5-carboxylate reductase compare
PP_4344 -2.1 -9.1 flagellar export pore protein compare
PP_4098 -2.1 -2.6 UvrABC system protein C compare
PP_1097 -2.0 -2.1 Methionine--tRNA ligase compare
PP_4680 -2.0 -11.1 acetohydroxybutanoate synthase / acetolactate synthase compare
PP_4376 -2.0 -9.9 flagellar filament capping protein compare
PP_4369 -2.0 -9.5 Flagellar M-ring protein compare
PP_4262 -2.0 -3.2 Cytochrome oxidase maturation protein, cbb3-type compare
PP_4124 -1.9 -3.2 NADH-quinone oxidoreductase subunit G compare
PP_4356 -1.9 -4.7 Flagellar protein FliO compare
PP_4386 -1.9 -6.7 flagellar basal-body rod protein FlgF compare
PP_5327 -1.9 -3.5 putative phosphate ABC transporter, permease subunit compare
PP_4361 -1.9 -5.3 Flagellar hook-length control protein FliK compare
PP_4366 -1.9 -9.3 flagellum-specific ATP synthase compare
PP_4891 -1.9 -4.8 integral membrane ATP-dependent zinc metallopeptidase / HflK-HflC complex compare
PP_4679 -1.8 -5.1 acetohydroxybutanoate synthase / acetolactate synthase compare
PP_4382 -1.8 -8.5 Peptidoglycan hydrolase FlgJ compare
PP_5128 -1.8 -6.4 Dihydroxy-acid dehydratase compare
PP_4380 -1.8 -9.3 Flagellar hook-associated protein FlgL compare
PP_4892 -1.8 -5.7 integral membrane ATP-dependent zinc metallopeptidase / HflK-HflC complex compare
PP_3649 -1.8 -4.7 Transcriptional regulator, GntR family compare
PP_1988 -1.8 -6.5 3-isopropylmalate dehydrogenase compare
PP_4126 -1.8 -1.2 NADH-quinone oxidoreductase subunit I compare
PP_1318 -1.8 -6.8 Cytochrome b compare
PP_4936 -1.8 -7.5 O-antigen polymerase compare
PP_4120 -1.8 -2.7 NADH-quinone oxidoreductase subunit B compare
PP_4378 -1.8 -10.9 flagellin, filament structural protein compare
PP_4388 -1.7 -10.6 Flagellar hook protein FlgE compare
PP_4358 -1.7 -6.2 flagellar synthesis, switching and energizing component compare
PP_4700 -1.7 -1.7 pantothenate synthetase compare
PP_1428 -1.7 -2.0 Sigma factor AlgU negative regulatory protein compare
PP_0949 -1.7 -5.1 putative ATP-binding protein UPF0042 compare
PP_4880 -1.7 -7.8 exoribonuclease R compare
PP_5084 -1.7 -7.7 penicillin-insensitive transglycosylase/penicillin-sensitive transpeptidase compare
PP_5146 -1.7 -5.7 RNA pyrophosphohydrolase compare
PP_2144 -1.7 -3.9 Transcriptional regulator, TetR family compare
PP_4370 -1.7 -3.5 Flagellar hook-basal body complex protein FliE compare
PP_4890 -1.7 -4.4 ATP phosphoribosyltransferase regulatory subunit compare
PP_1328 -1.6 -2.2 Protein MraZ compare
PP_0872 -1.6 -5.1 Peptide chain release factor 3 compare
PP_4353 -1.6 -4.1 Flagellar biosynthetic protein fliR compare
PP_4803 -1.6 -7.9 D-alanyl-D-alanine carboxypeptidase compare
PP_4355 -1.6 -1.9 flagellar export apparatus subunit compare
PP_1079 -1.6 -3.7 Ornithine carbamoyltransferase compare
PP_4384 -1.6 -7.4 Flagellar L-ring protein compare
PP_0435 -1.6 -5.6 Peptidase, M23/M37 family compare
PP_4678 -1.6 -9.4 Ketol-acid reductoisomerase compare
PP_4941 -1.6 -6.2 conserved exported protein of unknown function compare
PP_4379 -1.6 -3.1 Beta-ketoacyl-acyl-carrier-protein synthase I compare
PP_4368 -1.5 -5.3 flagellar motor switch protein compare
PP_4391 -1.5 -5.9 flagellar basal-body rod protein FlgB compare
PP_1986 -1.5 -2.3 3-isopropylmalate dehydratase small subunit compare
PP_2322 -1.5 -7.1 Major outer membrane lipoprotein compare
PP_4253 -1.5 -2.3 cytochrome c oxidase subunit, cbb3-type compare
PP_4381 -1.5 -8.5 Flagellar hook-associated protein FlgK compare
PP_4390 -1.5 -5.1 flagellar basal-body rod protein FlgC compare
PP_0401 -1.5 -3.2 Ribosomal RNA small subunit methyltransferase A compare
PP_4385 -1.5 -4.9 flagellar basal-body rod protein FlgG compare
PP_4261 -1.5 -4.7 cation-transporting P-type ATPase compare
PP_3833 -1.5 -3.4 Response regulator compare
PP_4470 -1.5 -3.1 putative transcriptional regulator (Arc domain-containing) compare
PP_4593 -1.4 -1.9 conserved protein of unknown function compare
PP_0291 -1.4 -3.4 conserved protein of unknown function compare
PP_5350 -1.4 -3.3 Transcriptional regulator, RpiR family compare
PP_0957 -1.4 -2.3 D-arabinose 5-phosphate isomerase compare
PP_1233 -1.4 -3.6 sulfurtransferase compare
PP_0393 -1.4 -1.0 putative 2-amino-4-hydroxy-6-hydroxymethyldihydropteridine pyrophosphokinase compare
PP_4352 -1.4 -8.9 flagellin export apparatus, substrate specificity protein compare
PP_4804 -1.4 -1.7 RlpA-like lipoprotein compare
PP_5309 -1.4 -5.8 oxidative and nitrosative stress transcriptional dual regulator compare
PP_4343 -1.4 -4.6 Flagellar biosynthesis protein FlhF compare
PP_5093 -1.4 -1.7 twitching motility protein compare
PP_4367 -1.4 -3.5 Flagellar assembly protein FliH compare
PP_4121 -1.4 -2.6 NADH-quinone oxidoreductase subunit C/D compare
PP_5347 -1.4 -7.1 pyruvate carboxylase subunit A compare
PP_4938 -1.4 -7.0 putative Glycosyl transferase compare
PP_3519 -1.4 -1.2 putative Lipoprotein compare
PP_5346 -1.3 -4.9 pyruvate carboxylase subunit B compare
PP_5217 -1.3 -9.1 Polyphosphate kinase compare
PP_0368 -1.3 -9.0 putative Acyl-CoA dehydrogenase compare
PP_5051 -1.3 -1.9 conserved protein of unknown function compare
PP_3511 -1.3 -5.1 Branched-chain-amino-acid aminotransferase compare
PP_2414 -1.3 -1.4 conserved exported protein of unknown function compare
PP_1493 -1.3 -1.8 chemotaxis response regulator protein-glutamate methylesterase of group 3 operon compare
PP_2847 -1.3 -1.7 Urease accessory protein UreJ compare
PP_1216 -1.3 -1.9 Holliday junction ATP-dependent DNA helicase RuvA compare
PP_0630 -1.3 -1.5 DNA gyrase inhibitor YacG compare
PP_5274 -1.3 -2.4 conserved protein of unknown function compare
PP_2214 -1.3 -2.4 3-hydroxyacyl-CoA dehydrogenase type-2 compare
PP_5295 -1.3 -2.2 conserved protein of unknown function compare
PP_0963 -1.3 -2.2 putative BolA family protein compare
PP_4251 -1.2 -2.4 cytochrome c oxidase subunit, cbb3-type compare
PP_4130 -1.2 -3.1 NADH:ubiquinone oxidoreductase, membrane subunit M compare
PP_2348 -1.2 -4.3 Sensor histidine kinase compare
PP_2820 -1.2 -2.4 HTH-type transcriptional regulator nfxB compare
PP_2337 -1.2 -1.6 aconitate isomerase compare
PP_1036 -1.2 -5.1 membrane-bound lytic murein transglycosylase F compare
PP_1025 -1.2 -6.2 2-isopropylmalate synthase compare
PP_5748 -1.2 -1.6 cytochrome c heme lyase subunit compare
PP_4394 -1.2 -4.4 flagella basal body P-ring formation protein compare
PP_0735 -1.2 -1.6 molybdopterin-synthase adenylyltransferase compare
PP_4964 -1.2 -2.6 D-erythrose 4-phosphate dehydrogenase compare
PP_5230 -1.2 -2.2 Tyrosine recombinase XerC compare
PP_1322 -1.2 -1.5 putative Lipoprotein compare
PP_5015 -1.1 -1.9 phosphoribosyl-ATP pyrophosphatase (EC 3.6.1.31) (from data) compare
PP_0083 -1.1 -4.5 tryptophan synthase beta chain compare
PP_1985 -1.1 -2.9 3-isopropylmalate dehydratase large subunit compare
PP_0504 -1.1 -3.2 Outer membrane protein OprG compare
PP_5198 -1.1 -2.8 conserved protein of unknown function compare
PP_2302 -1.1 -3.8 DNA-binding, ATP-dependent protease compare
PP_2029 -1.1 -2.2 von Willebrand factor type A domain protein compare
PP_2335 -1.1 -5.2 methylcitrate synthase compare
PP_4937 -1.1 -3.4 toluene tolerance protein compare
PP_5121 -1.1 -3.8 conserved exported protein of unknown function compare
PP_4591 -1.1 -2.7 Ribonuclease D compare
PP_2883 -1.1 -1.9 conserved protein of unknown function compare
PP_4905 -1.1 -4.1 Flagellar motor rotation protein compare
PP_4722 -1.1 -2.9 Transcription elongation factor GreA compare
PP_0513 -1.1 -2.2 DNA-binding transcriptional repressor NrdR-Zn2+-ATP/dATP compare
PP_4942 -1.1 -1.7 conserved protein of unknown function compare
PP_4338 -1.1 -5.0 Chemotaxis histidine kinase CheA compare
PP_4332 -1.1 -2.9 Chemotaxis protein CheW compare
PP_5507 -1.1 -2.3 protein of unknown function compare
PP_1224 -1.1 -3.8 periplasmic subunit of the TolQRA transport system compare
PP_1860 -1.0 -3.5 Organic hydroperoxide resistance transcriptional regulator compare
PP_2378 -1.0 -1.8 Fe/S biogenesis protein NfuA compare
PP_2328 -1.0 -2.6 Phosphoadenosine phosphosulfate reductase compare
PP_4785 -1.0 -2.8 conserved exported protein of unknown function compare


Specific Phenotypes

None in this experiment

For Pseudomonas putida KT2440 in soil experiments

For soil Soil=PNNL_Prosser_PlotA_B_20191220; Sterility=sterile; Collection=outgrowth_in_LB; SoilTreatment=none; SoilTreatmentTime=144_hrs across organisms