Experiment set24IT068 for Pseudomonas putida KT2440

Compare to:

Soil=PNNL_Prosser_PlotA_B_20191220; Sterility=sterile; Collection=outgrowth_in_LB; SoilTreatment=none; SoilTreatmentTime=144_hrs

200 most detrimental genes:

  gene name fitness t score description  
PP_1656 +3.0 10.4 ATP:GTP 3'-pyrophosphotransferase compare
PP_1655 +2.5 6.8 23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD compare
PP_1650 +2.5 21.7 Sensor protein GacS compare
PP_4099 +2.4 16.8 two-componenent system BarA/UvrY - regulatory subunit compare
PP_4734 +1.6 9.9 DNA-binding transcriptional dual regulator, LldR-L-lactate compare
PP_0574 +1.4 10.9 DNA-binding response regulator, LuxR family compare
PP_4171 +1.4 10.4 conserved exported protein of unknown function compare
PP_4268 +1.2 2.1 nucleoid-associated broad specificity regulator compare
PP_0593 +1.1 1.6 putative ribosome-binding factor compare
PP_3892 +1.1 2.0 conserved protein of unknown function compare
PP_3726 +1.1 1.9 Enoyl-CoA hydratase/isomerase family protein compare
PP_1054 +1.0 1.9 Type II secretion pathway protein XcpZ compare
PP_5453 +1.0 2.7 conserved protein of unknown function compare
PP_5053 +1.0 6.1 Protein-export protein SecB compare
PP_3971 +1.0 1.7 conserved protein of unknown function compare
PP_2070 +0.9 1.4 Transcriptional regulator, AraC family compare
PP_3241 +0.9 1.6 conserved exported protein of unknown function compare
PP_1824 +0.9 2.0 Smr domain protein compare
PP_0916 +0.9 1.7 Amino acid transporter LysE compare
PP_0855 +0.8 2.2 conserved protein of unknown function compare
PP_0999 +0.8 2.2 carbamate kinase compare
PP_2403 +0.8 0.8 Chemotaxis protein CheY compare
PP_4246 +0.8 6.4 Periplasmic binding protein compare
PP_0874 +0.8 1.5 conserved protein of unknown function compare
PP_4532 +0.8 1.7 ATP-dependent DEAD-box RNA helicase require for 50S ribosomal subunit biogenesis compare
PP_2568 +0.8 1.6 Ring-cleaving dioxygenase compare
PP_4227 +0.8 1.9 conserved protein of unknown function compare
PP_4100 +0.8 3.4 Transcriptional regulator, Cro/CI family compare
PP_4162 +0.8 2.3 conserved membrane protein of unknown function compare
PP_5669 +0.8 3.1 ABC transporter related compare
PP_3312 +0.8 1.3 putative Heat shock protein compare
PP_2633 +0.7 0.8 conserved protein of unknown function compare
PP_1113 +0.7 4.9 Pyridoxal-phosphate dependent enzyme family protein compare
PP_0273 +0.7 1.4 conserved protein of unknown function compare
PP_4833 +0.7 2.3 SURF1 domain protein compare
PP_3411 +0.7 1.4 conserved protein of unknown function compare
PP_3328 +0.7 2.2 putative Ring-cleaving dioxygenase compare
PP_4196 +0.7 1.1 conserved exported protein of unknown function compare
PP_0803 +0.7 4.1 Protein secretion ABC efflux system, membrane fusion protein compare
PP_0398 +0.7 2.9 Thiosulfate sulfurtransferase GlpE compare
PP_0775 +0.7 1.0 conserved protein of unknown function compare
PP_0627 +0.7 1.3 conserved protein of unknown function compare
PP_0880 +0.7 2.1 dipeptide ABC transporter - putative membrane subunit compare
PP_0900 +0.7 1.7 PAP2 family protein compare
PP_5628 +0.6 1.9 conserved protein of unknown function compare
PP_0210 +0.6 2.5 putative Phycobiliprotein compare
PP_5477 +0.6 2.6 conserved protein of unknown function compare
PP_5598 +0.6 2.9 conserved protein of unknown function compare
PP_1795 +0.6 4.7 conserved protein of unknown function compare
PP_0274 +0.6 1.1 putative transcriptional regulator containing HTH domain compare
PP_1112 +0.6 4.0 conserved membrane protein of unknown function compare
PP_1110 +0.6 1.6 serine acetyltransferase compare
PP_1291 +0.6 4.1 PhoH family protein compare
PP_0685 +0.6 1.4 conserved protein of unknown function compare
PP_4504 +0.6 1.4 conserved exported protein of unknown function compare
PP_1186 +0.6 1.1 two component system DNA-binding transcriptional dual regulator compare
PP_5586 +0.6 1.9 exported protein of unknown function compare
PP_1774 +0.6 1.9 conserved exported protein of unknown function compare
PP_3058 +0.6 2.1 conserved protein of unknown function compare
PP_1062 +0.6 1.7 MutT/nudix family protein compare
PP_4406 +0.6 1.1 conserved protein of unknown function compare
PP_5487 +0.6 2.4 conserved protein of unknown function compare
PP_2683 +0.6 1.7 putative sensory box histidine kinase/response regulator compare
PP_2387 +0.6 2.1 conserved protein of unknown function compare
PP_1381 +0.6 0.9 4-carboxymuconolactone decarboxylase compare
PP_4797 +0.6 0.8 conserved protein of unknown function compare
PP_4013 +0.6 3.1 MutT/nudix family protein compare
PP_4290 +0.6 2.5 uric acid permease compare
PP_2290 +0.6 1.4 conserved protein of unknown function compare
PP_1575 +0.6 1.4 conserved protein of unknown function compare
PP_3480 +0.6 1.6 conserved protein of unknown function compare
PP_4300 +0.6 3.0 putative hydroxypyruvate reductase compare
PP_1076 +0.6 1.8 aquaglyceroporin compare
PP_0639 +0.6 2.8 conserved protein of unknown function compare
PP_3496 +0.6 1.4 Endoribonuclease L-PSP compare
PP_3110 +0.6 1.1 protein of unknown function compare
PP_1269 +0.6 0.7 Universal stress protein family compare
PP_1548 +0.6 1.2 conserved protein of unknown function compare
PP_5201 +0.6 2.0 conserved protein of unknown function, UPF0149 family compare
PP_5535 +0.6 2.1 conserved membrane protein of unknown function compare
PP_5471 +0.6 0.7 putative response regulator receiver protein compare
PP_4424 +0.5 1.2 Uncharacterized HTH-type transcriptional regulator y4tD compare
PP_5491 +0.5 1.7 conserved protein of unknown function with SEC-C motif domain compare
PP_3864 +0.5 2.2 putative Phage FluMu DNA circulation protein compare
PP_0298 +0.5 2.0 AraC-family transcriptional regulator compare
PP_4151 +0.5 2.0 Excisionase domain protein compare
PP_2748 +0.5 1.1 putative Branched-chain amino acid ABC transporter, ATP-binding protein compare
PP_4317 +0.5 1.1 conserved protein of unknown function compare
PP_4198 +0.5 2.6 OmpA family protein compare
PP_1041 +0.5 1.1 twin arginine protein export complex subunit compare
PP_4452 +0.5 2.2 NAD/NADP octopine/nopaline dehydrogenase family protein compare
PP_4999 +0.5 0.3 dihydroorotase-like protein compare
PP_3232 +0.5 1.9 Acetyltransferase, GNAT family compare
PP_3938 +0.5 1.1 conserved protein of unknown function compare
PP_1439 +0.5 1.2 conserved exported protein of unknown function compare
PP_2277 +0.5 2.5 conserved protein of unknown function compare
PP_2668 +0.5 1.6 ABC efflux transporter, ATP-binding protein compare
PP_1903 +0.5 2.0 putative phosphotyrosine-protein phosphatase compare
PP_2209 +0.5 2.9 2-aminoethylphosphonate--pyruvate transaminase compare
PP_3286 +0.5 2.5 DNA-binding transcriptional repressor PaaX(phenylacetyl-CoA) compare
PP_3217 +0.5 2.4 putative Periplasmic aliphatic sulfonate-binding protein compare
PP_5267 +0.5 0.9 putative cytochrome c5 compare
PP_5675 +0.5 1.4 conserved protein of unknown function compare
PP_2159 +0.5 2.6 Copper-binding protein, plastocyanin/azurin family compare
PP_3235 +0.5 2.3 conserved protein of unknown function compare
PP_1794 +0.5 3.5 conserved hypothetical protein compare
PP_0680 +0.5 4.0 ATP-dependent protease-like protein compare
PP_0353 +0.5 2.4 Exonuclease compare
PP_3824 +0.5 1.0 conserved exported protein of unknown function compare
PP_1683 +0.5 0.9 Transcriptional regulator, MarR family compare
PP_3591 +0.5 2.0 Delta 1-piperideine-2-carboxylate reductase compare
PP_4799 +0.5 0.2 putative Muramoyltetrapeptide carboxypeptidase compare
PP_2750 +0.5 1.8 putative Branched-chain amino acid ABC transporter, permease protein compare
PP_1056 +0.5 2.1 putative Iron-chelator utilization protein compare
PP_3762 +0.5 2.2 Response regulator compare
PP_4848 +0.5 0.9 Curved DNA-binding protein compare
PP_1210 +0.5 1.8 DNA-binding stress protein compare
PP_1111 +0.5 2.4 putative Synthetase compare
PP_4132 +0.5 2.4 conserved protein of unknown function compare
PP_0821 +0.5 1.5 conserved exported protein of unknown function compare
PP_4413 +0.5 2.4 conserved protein of unknown function compare
PP_4699 +0.5 1.7 3-methyl-2-oxobutanoate hydroxymethyltransferase compare
PP_1258 +0.5 2.2 4-hydroxyproline epimerase compare
PP_4272 +0.5 2.6 conserved membrane protein of unknown function compare
PP_2722 +0.5 2.4 conserved protein of unknown function compare
PP_1117 +0.5 3.3 conserved protein of unknown function compare
PP_1070 +0.5 2.6 glutamate / aspartate ABC transporter - permease subunit compare
PP_3266 +0.5 2.4 conserved protein of unknown function compare
PP_1466 +0.5 1.4 Long-chain acyl-CoA thioester hydrolase family protein compare
PP_0440 +0.5 1.1 Elongation factor Tu-A compare
PP_0806 +0.5 4.3 putative Surface adhesion protein compare
PP_5144 +0.5 2.1 conserved protein of unknown function compare
PP_0258 +0.5 1.0 regulator of murein cross-linking compare
PP_4217 +0.5 4.1 outer membrane ferripyoverdine receptor FpvA, TonB-dependent compare
PP_5191 +0.5 1.7 conserved exported protein of unknown function compare
PP_5659 +0.5 1.4 protein of unknown function compare
PP_1631 +0.5 2.3 conserved protein of unknown function compare
PP_2976 +0.5 1.0 putative transposase compare
PP_5202 +0.5 0.8 putative cell division protein compare
PP_3964 +0.5 2.3 transposase compare
PP_1347 +0.5 2.1 Glutathione S-transferase family protein compare
PP_3565 +0.5 1.7 Transporter, LysE family compare
PP_3449 +0.5 1.3 conserved exported protein of unknown function compare
PP_1481 +0.5 2.8 medium chain aldehyde dehydrogenase compare
PP_1299 +0.5 1.8 putative amino acid ABC transporter - membrane subunit compare
PP_0649 +0.5 1.9 MutT/nudix family protein compare
PP_2110 +0.4 1.1 putative ribosomal large subunit pseudouridine synthase compare
PP_2318 +0.4 1.7 acyl-CoA thioesterase I/protease I/lysophospholipase L1 compare
PP_1422 +0.4 1.5 conserved protein of unknown function compare
PP_4629 +0.4 1.9 Sensory box protein compare
PP_5674 +0.4 1.1 conserved protein of unknown function compare
PP_5478 +0.4 1.7 conserved protein of unknown function compare
PP_3774 +0.4 2.2 conserved protein of unknown function compare
PP_1391 +0.4 2.1 Transcriptional regulator, LysR family compare
PP_1390 +0.4 1.1 conserved exported protein of unknown function compare
PP_5322 +0.4 1.8 putative metal ion transporter compare
PP_5427 +0.4 1.7 conserved exported protein of unknown function compare
PP_4760 +0.4 1.4 Alcohol dehydrogenase, zinc-containing compare
PP_5381 +0.4 1.2 hypothetical protein compare
PP_5SB +0.4 1.5 5S ribosomal RNA compare
PP_5248 +0.4 0.8 putative hydrolase compare
PP_5701 +0.4 0.9 conserved protein of unknown function compare
PP_3211 +0.4 2.4 ABC transporter, ATP-binding protein compare
PP_0352 +0.4 1.1 RNA polymerase sigma-70 factor, ECF subfamily compare
PP_3392 +0.4 1.0 conserved protein of unknown function compare
PP_4230 +0.4 2.3 conserved exported protein of unknown function compare
PP_1568 +0.4 0.7 conserved protein of unknown function compare
PP_2999 +0.4 0.8 Glyoxalase family protein compare
PP_1045 +0.4 0.6 Type II secretion pathway protein XcpP compare
PP_2816 +0.4 1.4 putative Transcriptional regulator NfxB compare
PP_2269 +0.4 1.1 putative N-acetylmuramoyl-L-alanine amidase compare
PP_5571 +0.4 0.7 conserved protein of unknown function compare
PP_2894 +0.4 1.2 conserved protein of unknown function compare
PP_4874 +0.4 0.5 50S ribosomal protein L9 compare
PP_3935 +0.4 1.3 conserved protein of unknown function compare
PP_5034 +0.4 1.9 Uncharacterized 21.2 kDa protein in hutC 3'region compare
PP_3855 +0.4 1.7 conserved protein of unknown function compare
PP_1790 +0.4 1.6 putative Acylneuraminate cytidylyltransferase compare
PP_3730 +0.4 1.0 Transcriptional regulatory protein AruR compare
PP_5494 +0.4 2.2 protein of unknown function compare
PP_2858 +0.4 1.2 conserved exported protein of unknown function compare
PP_2198 +0.4 2.7 aldose sugar dehydrogenase compare
PP_5143 +0.4 1.0 conserved membrane protein of unknown function compare
PP_3398 +0.4 0.9 putative Curli fiber surface-exposed nucleator CsgB compare
PP_3405 +0.4 2.5 conserved membrane protein of unknown function compare
PP_2764 +0.4 1.4 FMN reductase (NADPH) compare
PP_2426 +0.4 1.8 coniferyl alcohol dehydrogenase compare
PP_1574 +0.4 1.6 conserved protein of unknown function compare
PP_5671 +0.4 1.6 conserved protein of unknown function compare
PP_2274 +0.4 1.3 conserved protein of unknown function compare
PP_5161 +0.4 1.4 putative lysophospholipase compare
PP_0029 +0.4 2.3 two component heavy metal response regulator compare
PP_3840 +0.4 0.7 conserved protein of unknown function compare
PP_5188 +0.4 2.1 putative transcriptional regulator (AsnC/Lrp family) compare
PP_0578 +0.4 2.3 putative Methyltransferase compare
PP_3369 +0.4 1.5 Transcriptional regulator, LysR family compare
PP_2677 +0.4 0.8 conserved exported protein of unknown function compare
PP_1674 +0.4 1.5 5,6-dimethylbenzimidazole synthase compare
PP_4412 +0.4 2.7 conserved protein of unknown function compare
PP_3662 +0.4 2.1 conserved protein of unknown function compare


Specific Phenotypes

None in this experiment

For Pseudomonas putida KT2440 in soil experiments

For soil Soil=PNNL_Prosser_PlotA_B_20191220; Sterility=sterile; Collection=outgrowth_in_LB; SoilTreatment=none; SoilTreatmentTime=144_hrs across organisms