Experiment set24IT067 for Pseudomonas putida KT2440

Compare to:

Soil=PNNL_Prosser_PlotA_B_20191220; Sterility=sterile; Collection=outgrowth_in_LB; SoilTreatment=none; SoilTreatmentTime=144_hrs

200 most important genes:

  gene name fitness t score description  
PP_3484 -7.2 -5.0 Response regulator receiver protein compare
PP_0164 -6.0 -5.8 conserved protein of unknown function compare
PP_1623 -5.9 -9.1 RNA polymerase, sigma S (sigma 38) factor compare
PP_1898 -5.5 -3.8 MotA/TolQ/ExbB proton channel family protein compare
PP_0760 -5.4 -4.7 conserved membrane protein of unknown function compare
PP_4943 -5.2 -3.6 putative Glycosyl transferase compare
PP_1198 -5.1 -5.0 transcriptional regulator, Cro/CI family (higA antitoxin like) compare
PP_4902 -4.7 -3.2 Oligoribonuclease compare
PP_1778 -4.6 -9.0 Lipopolysaccharide ABC export system, permease protein compare
PP_0951 -4.5 -11.0 Ribosome hibernation promoting factor compare
PP_5289 -4.2 -4.1 Acetylglutamate kinase compare
PP_0406 -4.1 -2.8 Nucleotidyltransferase family protein compare
PP_4726 -4.1 -4.4 Chaperone protein DnaJ compare
PP_1215 -3.9 -3.3 Crossover junction endodeoxyribonuclease RuvC compare
PP_5502 -3.8 -5.6 ribosome modulation factor compare
PP_0293 -3.4 -2.3 Imidazole glycerol phosphate synthase subunit HisF compare
PP_4994 -3.4 -4.8 conserved protein of unknown function compare
PP_0396 -3.4 -14.0 conserved protein of unknown function compare
PP_0846 -3.4 -1.9 DnaK-like molecular chaperone specific for IscU compare
PP_5185 -3.4 -7.2 acetylglutamate kinase-like protein (regulatory domain)/amino acid N-acetyltransferase compare
PP_4342 -3.3 -3.9 flagellar synthesis regulator, putative ATPase compare
PP_1734 -3.3 -5.7 Probable septum site-determining protein MinC compare
PP_0184 -3.2 -6.3 Argininosuccinate lyase compare
PP_3821 -3.1 -10.7 UTP-glucose-1-phosphate uridylyltransferase compare
PP_2378 -3.1 -2.1 Fe/S biogenesis protein NfuA compare
PP_0397 -3.1 -13.1 protein kinase compare
PP_1088 -3.0 -10.2 Argininosuccinate synthase compare
PP_4008 -3.0 -8.3 ATP-dependent serine protease compare
PP_1733 -3.0 -4.6 membrane ATPase of the MinC-MinD-MinE system compare
PP_4058 -3.0 -11.1 1,4-alpha-glucan branching enzyme compare
PP_1779 -2.9 -6.8 Lipopolysaccharide ABC export system, ATP-binding protein compare
PP_1428 -2.9 -2.0 Sigma factor AlgU negative regulatory protein compare
PP_0395 -2.8 -12.3 putative type IV piliation protein compare
PP_4120 -2.8 -1.9 NADH-quinone oxidoreductase subunit B compare
PP_1319 -2.7 -7.6 Ubiquinol--cytochrome c reductase, cytochrome c1 compare
PP_0547 -2.7 -4.4 UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl- meso-diaminopimelate ligase compare
PP_4129 -2.7 -1.9 NADH:ubiquinone oxidoreductase, membrane subunit L compare
PP_4471 -2.6 -4.8 Magnesium transporter compare
PP_0289 -2.6 -8.1 Imidazoleglycerol-phosphate dehydratase compare
PP_4701 -2.5 -1.4 glucose-6-phosphate isomerase compare
PP_0292 -2.5 -2.7 1-(5-phosphoribosyl)-5-((5-phosphoribosylamino)methylideneamino)imidazole-4-carboxamide isomerase (EC 5.3.1.16) (from data) compare
PP_4122 -2.5 -2.1 proton-pumping NADH:ubiquinone oxidoreductase, respiratory complex I, subunit E compare
PP_2145 -2.5 -3.6 beta-N-acetylglucosaminidase compare
PP_2327 -2.4 -4.8 transcriptional dual regulator / CysB-O-acetyl-L-serine compare
PP_4892 -2.4 -6.7 integral membrane ATP-dependent zinc metallopeptidase / HflK-HflC complex compare
PP_1097 -2.4 -2.2 Methionine--tRNA ligase compare
PP_4891 -2.4 -5.5 integral membrane ATP-dependent zinc metallopeptidase / HflK-HflC complex compare
PP_5145 -2.4 -15.0 phosphoenolpyruvate-dependent regulator (with NPR and NTR proteins) compare
PP_4356 -2.3 -2.6 Flagellar protein FliO compare
PP_4895 -2.3 -1.6 tRNA dimethylallyltransferase compare
PP_5095 -2.3 -1.4 pyrroline-5-carboxylate reductase compare
PP_0965 -2.2 -7.3 ATP phosphoribosyltransferase (EC 2.4.2.17) (from data) compare
PP_4940 -2.2 -9.8 Putative glycosyltransferase compare
PP_0966 -2.2 -8.0 Histidinol dehydrogenase compare
PP_3580 -2.2 -2.6 conserved protein of unknown function compare
PP_4143 -2.2 -4.8 conserved protein of unknown function compare
PP_5014 -2.2 -2.8 Phosphoribosyl-AMP cyclohydrolase compare
PP_4375 -2.2 -7.1 flagellar chaperone, inhibits premature FliC assembly compare
PP_4337 -2.2 -5.2 chemotaxis response regulator protein-glutamate methylesterase of group 1 operon compare
PP_4936 -2.1 -7.6 O-antigen polymerase compare
PP_2214 -2.1 -4.4 3-hydroxyacyl-CoA dehydrogenase type-2 compare
PP_0290 -2.1 -5.1 Imidazole glycerol phosphate synthase subunit HisH compare
PP_1224 -2.1 -4.8 periplasmic subunit of the TolQRA transport system compare
PP_0967 -2.1 -7.5 histidinol-phosphate aminotransferase (EC 2.6.1.9) (from data) compare
PP_2031 -2.1 -3.1 conserved protein of unknown function compare
PP_1237 -2.1 -1.1 4-hydroxy-tetrahydrodipicolinate synthase compare
PP_4941 -2.1 -6.9 conserved exported protein of unknown function compare
PP_4880 -2.1 -9.7 exoribonuclease R compare
PP_4370 -2.1 -3.4 Flagellar hook-basal body complex protein FliE compare
PP_1317 -2.0 -5.6 Ubiquinol-cytochrome c reductase iron-sulfur subunit compare
PP_4354 -2.0 -3.4 flagellar export apparatus subunit compare
PP_4131 -2.0 -5.3 NADH-quinone oxidoreductase subunit N compare
PP_4004 -2.0 -2.9 DNA translocase FtsK compare
PP_4804 -2.0 -1.9 RlpA-like lipoprotein compare
PP_4358 -2.0 -6.7 flagellar synthesis, switching and energizing component compare
PP_4368 -1.9 -4.8 flagellar motor switch protein compare
PP_4124 -1.9 -3.9 NADH-quinone oxidoreductase subunit G compare
PP_1216 -1.9 -3.2 Holliday junction ATP-dependent DNA helicase RuvA compare
PP_4126 -1.9 -1.3 NADH-quinone oxidoreductase subunit I compare
PP_4938 -1.9 -7.5 putative Glycosyl transferase compare
PP_3833 -1.9 -3.3 Response regulator compare
PP_4361 -1.9 -6.1 Flagellar hook-length control protein FliK compare
PP_1493 -1.8 -2.6 chemotaxis response regulator protein-glutamate methylesterase of group 3 operon compare
PP_4369 -1.8 -6.1 Flagellar M-ring protein compare
PP_3511 -1.8 -6.3 Branched-chain-amino-acid aminotransferase compare
PP_2862 -1.8 -6.7 Undecaprenyl-diphosphatase compare
PP_4353 -1.8 -5.1 Flagellar biosynthetic protein fliR compare
PP_4909 -1.8 -4.6 phosphoserine phosphatase compare
PP_0949 -1.8 -4.7 putative ATP-binding protein UPF0042 compare
PP_4378 -1.8 -10.7 flagellin, filament structural protein compare
PP_5328 -1.8 -2.4 putative phosphate transport system permease protein compare
PP_4121 -1.8 -4.3 NADH-quinone oxidoreductase subunit C/D compare
PP_2144 -1.8 -4.5 Transcriptional regulator, TetR family compare
PP_4376 -1.8 -8.4 flagellar filament capping protein compare
PP_2322 -1.8 -5.1 Major outer membrane lipoprotein compare
PP_4382 -1.8 -8.8 Peptidoglycan hydrolase FlgJ compare
PP_4344 -1.7 -8.9 flagellar export pore protein compare
PP_4680 -1.7 -8.6 acetohydroxybutanoate synthase / acetolactate synthase compare
PP_4546 -1.7 -4.0 ATP-dependent helicase HrpA compare
PP_1217 -1.7 -5.0 Holliday junction ATP-dependent DNA helicase RuvB compare
PP_0003 -1.7 -3.2 16S RNA methyltransferase compare
PP_4910 -1.7 -3.0 conserved protein of unknown function compare
PP_0291 -1.7 -2.4 conserved protein of unknown function compare
PP_4942 -1.7 -2.0 conserved protein of unknown function compare
PP_1988 -1.6 -5.3 3-isopropylmalate dehydrogenase compare
PP_4388 -1.6 -10.1 Flagellar hook protein FlgE compare
PP_1985 -1.6 -2.9 3-isopropylmalate dehydratase large subunit compare
PP_4384 -1.6 -7.8 Flagellar L-ring protein compare
PP_0872 -1.6 -6.0 Peptide chain release factor 3 compare
PP_0888 -1.6 -1.4 Photosynthetic apparatus regulatory protein RegA compare
PP_1079 -1.6 -3.7 Ornithine carbamoyltransferase compare
PP_4381 -1.6 -8.8 Flagellar hook-associated protein FlgK compare
PP_2029 -1.6 -1.5 von Willebrand factor type A domain protein compare
PP_4679 -1.6 -5.1 acetohydroxybutanoate synthase / acetolactate synthase compare
PP_5327 -1.6 -3.3 putative phosphate ABC transporter, permease subunit compare
PP_4341 -1.6 -7.3 RNA polymerase sigma 28 (sigma F) factor for class III flagellar operons compare
PP_5155 -1.6 -4.6 D-3-phosphoglycerate dehydrogenase / alpha-ketoglutarate reductase compare
PP_4366 -1.6 -8.6 flagellum-specific ATP synthase compare
PP_1318 -1.5 -4.2 Cytochrome b compare
PP_5217 -1.5 -11.0 Polyphosphate kinase compare
PP_4380 -1.5 -9.5 Flagellar hook-associated protein FlgL compare
PP_0393 -1.5 -1.1 putative 2-amino-4-hydroxy-6-hydroxymethyldihydropteridine pyrophosphokinase compare
PP_5216 -1.5 -2.2 exopolyphosphatase compare
PP_4700 -1.5 -1.8 pantothenate synthetase compare
PP_5393 -1.5 -1.6 putative metal-binding chaperone compare
PP_4678 -1.5 -9.2 Ketol-acid reductoisomerase compare
PP_4890 -1.5 -3.2 ATP phosphoribosyltransferase regulatory subunit compare
PP_5128 -1.5 -6.9 Dihydroxy-acid dehydratase compare
PP_4386 -1.5 -3.8 flagellar basal-body rod protein FlgF compare
PP_4383 -1.5 -4.5 Flagellar P-ring protein compare
PP_4937 -1.5 -4.0 toluene tolerance protein compare
PP_0435 -1.5 -6.0 Peptidase, M23/M37 family compare
PP_1410 -1.5 -1.5 conserved protein of unknown function compare
PP_2433 -1.5 -2.3 conserved protein of unknown function compare
PP_0123 -1.4 -6.1 DNA polymerase I, 5 compare
PP_4390 -1.4 -7.0 flagellar basal-body rod protein FlgC compare
PP_2348 -1.4 -3.2 Sensor histidine kinase compare
PP_4696 -1.4 -3.7 Nitrogen regulation protein NR(I) compare
PP_3916 -1.4 -2.6 conserved protein of unknown function compare
PP_5329 -1.4 -1.0 putative phosphate ABC transporter, periplasmic phosphate-binding protein compare
PP_5346 -1.4 -4.9 pyruvate carboxylase subunit B compare
PP_0022 -1.4 -1.2 hypothetical protein compare
PP_4391 -1.4 -5.2 flagellar basal-body rod protein FlgB compare
PP_2402 -1.4 -1.9 putative Sensor histidine kinase compare
PP_4352 -1.4 -6.8 flagellin export apparatus, substrate specificity protein compare
PP_4394 -1.4 -4.1 flagella basal body P-ring formation protein compare
PP_1986 -1.4 -1.9 3-isopropylmalate dehydratase small subunit compare
PP_5146 -1.4 -5.3 RNA pyrophosphohydrolase compare
PP_0735 -1.4 -1.6 molybdopterin-synthase adenylyltransferase compare
PP_0789 -1.4 -3.5 N-acetyl-anhydromuramyl-L-alanine-amidase compare
PP_5347 -1.4 -6.8 pyruvate carboxylase subunit A compare
PP_5350 -1.3 -3.2 Transcriptional regulator, RpiR family compare
PP_1036 -1.3 -6.0 membrane-bound lytic murein transglycosylase F compare
PP_3649 -1.3 -3.6 Transcriptional regulator, GntR family compare
PP_5309 -1.3 -4.7 oxidative and nitrosative stress transcriptional dual regulator compare
PP_5594 -1.3 -2.4 conserved protein of unknown function compare
PP_5084 -1.3 -6.6 penicillin-insensitive transglycosylase/penicillin-sensitive transpeptidase compare
PP_2153 -1.3 -3.9 conserved protein of unknown function compare
PP_1025 -1.3 -7.1 2-isopropylmalate synthase compare
PP_4199 -1.3 -1.1 putative Lipoprotein compare
PP_4988 -1.3 -5.0 signal transduction histidine kinase CheA/CheY-like receiver compare
PP_4364 -1.3 -3.5 putative Anti-sigma F factor antagonist compare
PP_4396 -1.3 -3.0 conserved protein of unknown function compare
PP_5015 -1.3 -2.5 phosphoribosyl-ATP pyrophosphatase (EC 3.6.1.31) (from data) compare
PP_5230 -1.3 -2.4 Tyrosine recombinase XerC compare
PP_5331 -1.3 -2.3 Long-chain acyl-CoA thioester hydrolase compare
PP_2414 -1.3 -1.6 conserved exported protein of unknown function compare
PP_4367 -1.3 -4.1 Flagellar assembly protein FliH compare
PP_2442 -1.3 -2.1 conserved protein of unknown function, DUF480 family compare
PP_0834 -1.2 -2.5 Sec translocation complex subunit YajC compare
PP_4365 -1.2 -5.0 Flagellar protein FliJ compare
PP_1269 -1.2 -0.9 Universal stress protein family compare
PP_4214 -1.2 -3.1 pyoverdine biosynthesis related protein compare
PP_4067 -1.2 -4.6 methylcrotonyl-CoA carboxylase biotin-containing subunit alpha compare
PP_2028 -1.2 -3.2 conserved protein of unknown function containing tetratricopeptide (TPR) domain repeat compare
PP_4343 -1.2 -3.6 Flagellar biosynthesis protein FlhF compare
PP_5313 -1.2 -1.8 DNA-binding protein HU-alpha compare
PP_1232 -1.2 -5.4 conserved exported protein of unknown function compare
PP_4385 -1.2 -4.7 flagellar basal-body rod protein FlgG compare
PP_4803 -1.2 -5.6 D-alanyl-D-alanine carboxypeptidase compare
PP_2044 -1.2 -1.9 conserved inner membrane protein of unknown function compare
PP_0368 -1.2 -7.8 putative Acyl-CoA dehydrogenase compare
PP_1804 -1.2 -5.1 Glycosyl transferase WbpL compare
PP_5310 -1.1 -4.3 junction-specific ATP-dependent DNA helicase compare
PP_2027 -1.1 -4.2 conserved exported protein of unknown function compare
PP_1233 -1.1 -3.3 sulfurtransferase compare
PP_1729 -1.1 -1.9 conserved protein of unknown function compare
PP_5232 -1.1 -2.5 conserved protein of unknown function compare
PP_4993 -1.1 -3.0 Glutathione synthetase compare
PP_4066 -1.1 -3.0 methylglutaconyl-CoA hydratase compare
PP_4359 -1.1 -4.5 Flagellar protein FliL compare
PP_1268 -1.1 -2.0 putative HtrA suppressor protein sohA compare
PP_2371 -1.1 -3.3 Sulphite reductase hemoprotein, beta subunit compare
PP_0673 -1.1 -1.3 conserved protein of unknown function compare
PP_1528 -1.1 -1.5 conserved protein of unknown function compare
PP_4207 -1.1 -3.6 conserved protein of unknown function compare
PP_5652 -1.1 -1.1 conserved protein of unknown function, phage origin compare
PP_4785 -1.1 -2.9 conserved exported protein of unknown function compare
PP_2390 -1.1 -5.1 Transcriptional regulator, LysR family compare
PP_1008 -1.1 -2.6 RNA polymerase subunit sigma-24 compare


Specific Phenotypes

None in this experiment

For Pseudomonas putida KT2440 in soil experiments

For soil Soil=PNNL_Prosser_PlotA_B_20191220; Sterility=sterile; Collection=outgrowth_in_LB; SoilTreatment=none; SoilTreatmentTime=144_hrs across organisms