Experiment set24IT067 for Pseudomonas putida KT2440

Compare to:

Soil=PNNL_Prosser_PlotA_B_20191220; Sterility=sterile; Collection=outgrowth_in_LB; SoilTreatment=none; SoilTreatmentTime=144_hrs

200 most detrimental genes:

  gene name fitness t score description  
PP_1656 +3.0 10.2 ATP:GTP 3'-pyrophosphotransferase compare
PP_1655 +2.7 6.5 23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD compare
PP_1650 +2.6 17.7 Sensor protein GacS compare
PP_4099 +2.5 15.5 two-componenent system BarA/UvrY - regulatory subunit compare
PP_4734 +2.0 10.4 DNA-binding transcriptional dual regulator, LldR-L-lactate compare
PP_4268 +1.8 3.5 nucleoid-associated broad specificity regulator compare
PP_0574 +1.4 11.7 DNA-binding response regulator, LuxR family compare
PP_4171 +1.4 10.6 conserved exported protein of unknown function compare
PP_3892 +1.3 2.3 conserved protein of unknown function compare
PP_1381 +1.3 2.2 4-carboxymuconolactone decarboxylase compare
PP_2510 +1.2 2.3 conserved protein of unknown function compare
PP_1713 +1.1 2.7 Transcriptional regulator PcaQ compare
PP_0086 +1.1 2.4 conserved protein of unknown function compare
PP_3726 +1.1 2.2 Enoyl-CoA hydratase/isomerase family protein compare
PP_4254 +1.0 2.0 conserved protein of unknown function compare
PP_3407 +1.0 2.5 conserved protein of unknown function compare
PP_1501 +1.0 4.2 conserved protein of unknown function compare
PP_2087 +1.0 2.0 CmpX protein compare
PP_4230 +0.9 4.8 conserved exported protein of unknown function compare
PP_3904 +0.9 2.1 conserved protein of unknown function compare
PP_0959 +0.9 2.4 phospholipid ABC transporter compare
PP_3398 +0.9 2.1 putative Curli fiber surface-exposed nucleator CsgB compare
PP_0803 +0.9 6.2 Protein secretion ABC efflux system, membrane fusion protein compare
PP_5654 +0.9 1.5 putative phosphotriesterase compare
PP_0440 +0.8 1.8 Elongation factor Tu-A compare
PP_2828 +0.8 3.2 conserved protein of unknown function compare
PP_5473 +0.8 2.0 putative transcriptional regulator, LuxR family compare
PP_0653 +0.8 1.6 conserved protein of unknown function compare
PP_5571 +0.8 1.3 conserved protein of unknown function compare
PP_1824 +0.8 0.8 Smr domain protein compare
PP_1000 +0.8 2.8 ornithine carbamoyltransferase, catabolic compare
PP_5457 +0.8 3.4 conserved protein of unknown function compare
PP_0353 +0.8 3.2 Exonuclease compare
PP_1922 +0.7 3.5 conserved protein of unknown function compare
PP_4198 +0.7 2.9 OmpA family protein compare
PP_1987 +0.7 1.3 Methlytransferase, UbiE/COQ5 family compare
PP_2899 +0.7 0.9 conserved exported protein of unknown function compare
PP_4196 +0.7 2.5 conserved exported protein of unknown function compare
PP_2768 +0.7 1.7 putative Branched-chain amino acid ABC transporter, permease protein compare
PP_2309 +0.7 1.1 conserved protein of unknown function compare
PP_1544 +0.7 2.2 conserved protein of unknown function compare
PP_4317 +0.7 2.0 conserved protein of unknown function compare
PP_3935 +0.7 2.6 conserved protein of unknown function compare
PP_0805 +0.7 4.0 Outer membrane efflux protein compare
PP_2681 +0.7 1.6 coenzyme PQQ synthesis protein D compare
PP_t49 +0.7 2.4 tRNA-Met compare
PP_0640 +0.7 1.9 conserved protein of unknown function compare
PP_4504 +0.7 1.3 conserved exported protein of unknown function compare
PP_2683 +0.7 2.0 putative sensory box histidine kinase/response regulator compare
PP_0725 +0.7 2.2 conserved hypothetical TPR repeat protein compare
PP_1390 +0.7 2.1 conserved exported protein of unknown function compare
PP_1291 +0.7 3.5 PhoH family protein compare
PP_5701 +0.7 1.3 conserved protein of unknown function compare
PP_2070 +0.7 1.1 Transcriptional regulator, AraC family compare
PP_0827 +0.7 1.7 putative phosphonate transport system permease protein PtxC compare
PP_5619 +0.7 1.2 protein of unknown function compare
PP_0806 +0.6 5.9 putative Surface adhesion protein compare
PP_1176 +0.6 0.9 conserved protein of unknown function compare
PP_1002 +0.6 2.4 arginine/ornithine antiporter compare
PP_2793 +0.6 1.8 Acyl-CoA dehydrogenase family protein compare
PP_1548 +0.6 0.8 conserved protein of unknown function compare
PP_0649 +0.6 3.5 MutT/nudix family protein compare
PP_3589 +0.6 2.8 serine:H+ symport permease, threonine-insensitive compare
PP_5508 +0.6 1.1 conserved protein of unknown function compare
PP_1633 +0.6 2.0 conserved exported protein of unknown function compare
PP_3942 +0.6 2.1 maleate isomerase compare
PP_4799 +0.6 0.3 putative Muramoyltetrapeptide carboxypeptidase compare
PP_5528 +0.6 1.4 conserved protein of unknown function compare
PP_2090 +0.6 2.4 Uroporphyrinogen-III C-methyltransferase compare
PP_5058 +0.6 2.0 Carboxy-terminal-processing protease compare
PP_2826 +0.6 1.6 Transcriptional regulator MexT compare
PP_5598 +0.6 2.2 conserved protein of unknown function compare
PP_3411 +0.6 1.0 conserved protein of unknown function compare
PP_4999 +0.6 0.3 dihydroorotase-like protein compare
PP_3662 +0.6 2.6 conserved protein of unknown function compare
PP_2132 +0.6 1.4 Universal stress protein compare
PP_1210 +0.6 2.2 DNA-binding stress protein compare
PP_2229 +0.6 2.1 putative K(+)/H(+) antiporter subunit C compare
PP_1353 +0.6 1.0 conserved membrane protein of unknown function compare
PP_4607 +0.6 3.3 putative Transmembrane sensor compare
PP_3447 +0.6 1.1 conserved membrane protein of unknown function compare
PP_4814 +0.6 1.6 ATP-dependent protease La domain protein compare
PP_4957 +0.6 1.4 conserved protein of unknown function compare
PP_0639 +0.6 2.0 conserved protein of unknown function compare
PP_3898 +0.6 1.2 conserved protein of unknown function compare
PP_0856 +0.6 0.8 conserved lipoprotein of unknown function compare
PP_1054 +0.6 0.7 Type II secretion pathway protein XcpZ compare
PP_1048 +0.6 1.3 putative protein secretion protein for export compare
PP_1352 +0.6 2.2 UPF0234 protein PP_1352 compare
PP_2186 +0.6 1.1 putative Formate dehydrogenase, delta subunit compare
PP_1113 +0.5 3.4 Pyridoxal-phosphate dependent enzyme family protein compare
PP_2101 +0.5 2.3 DNA-binding response regulator in two-component regulatory system with EvgS compare
PP_2747 +0.5 0.4 conserved protein of unknown function compare
PP_2863 +0.5 2.2 conserved membrane protein of unknown function compare
PP_5437 +0.5 2.1 protein of unknown function compare
PP_5549 +0.5 2.1 conserved protein of unknown function compare
PP_1722 +0.5 2.5 ABC transporter, ATP-binding protein compare
PP_1574 +0.5 2.5 conserved protein of unknown function compare
PP_1142 +0.5 0.8 conserved protein of unknown function compare
PP_3116 +0.5 1.3 transcriptional repressor compare
PP_0937 +0.5 1.6 endoribonuclease G (RNAse G) compare
PP_4223 +0.5 1.2 diaminobutyrate-2-oxoglutarate transaminase compare
PP_4328 +0.5 2.0 conserved protein of unknown function compare
PP_0677 +0.5 0.8 putative Lipoprotein compare
PP_3808 +0.5 1.3 Antibiotic synthesis protein MbtH compare
PP_3378 +0.5 1.1 putative 2-ketogluconokinase compare
PP_4173 +0.5 3.0 Sensor histidine kinase/response regulator compare
PP_2633 +0.5 1.1 conserved protein of unknown function compare
PP_5563 +0.5 2.5 conserved membrane protein of unknown function compare
PP_3940 +0.5 2.5 Putative metabolite transport protein NicT compare
PP_1166 +0.5 2.2 putative permease of the drug/metabolite transporter (DMT) superfamily compare
PP_3289 +0.5 2.2 Acetyltransferase, GNAT family compare
PP_5747 +0.5 2.9 pyridine nucleotide transhydrogenase subunit alpha compare
PP_3899 +0.5 1.3 conserved protein of unknown function, hicB family compare
PP_5687 +0.5 1.9 putative permease of the major facilitator superfamily compare
PP_4569 +0.5 1.2 conserved protein of unknown function compare
PP_5712 +0.5 2.6 conserved protein of unknown function compare
PP_4706 +0.5 1.7 conserved protein of unknown function compare
PP_0171 +0.5 2.4 ABC transporter, ATP-binding protein compare
PP_4246 +0.5 2.9 Periplasmic binding protein compare
PP_5669 +0.5 2.2 ABC transporter related compare
PP_4616 +0.5 1.2 conserved protein of unknown function compare
PP_1763 +0.5 1.1 putative oxidoreductase compare
PP_4901 +0.5 1.6 conserved inner membrane protein compare
PP_1004 +0.5 1.5 conserved protein of unknown function compare
PP_3186 +0.5 1.3 putative Transcriptional activator compare
PP_3978 +0.5 2.0 conserved protein of unknown function compare
PP_5499 +0.5 1.7 conserved protein of unknown function compare
PP_2980 +0.5 1.7 conserved protein of unknown function compare
PP_0676 +0.5 2.6 putative Transcription elongation factor compare
PP_1691 +0.5 2.0 conserved protein of unknown function compare
PP_0244 +0.5 1.7 conserved protein of unknown function compare
PP_1709 +0.5 1.9 Fumarylacetoacetate hydrolase family protein compare
PP_5487 +0.5 1.8 conserved protein of unknown function compare
PP_2592 +0.5 1.6 Ferric siderophore ABC transporter, ATP-binding protein compare
PP_5638 +0.5 1.9 conserved protein of unknown function compare
PP_0998 +0.5 2.2 conserved protein of unknown function compare
PP_4168 +0.5 1.2 conserved protein of unknown function compare
PP_0905 +0.5 0.7 conserved exported protein of unknown function compare
PP_2498 +0.5 1.5 conserved protein of unknown function compare
PP_5674 +0.5 1.7 conserved protein of unknown function compare
PP_4424 +0.5 1.2 Uncharacterized HTH-type transcriptional regulator y4tD compare
PP_0804 +0.5 3.4 Protein secretion ABC efflux system, permease and ATP-binding protein compare
PP_2740 +0.5 1.0 Transcriptional regulator, MerR family compare
PP_5558 +0.4 2.0 putative transcriptional xre family of phage origin compare
PP_2388 +0.4 1.2 Transporter, LysE family compare
PP_3346 +0.4 1.5 Nickel transporter ATP-binding protein compare
PP_3265 +0.4 0.9 putative phosphohydrolase of unknown function compare
PP_4911 +0.4 2.1 conserved protein of unknown function compare
PP_1391 +0.4 2.4 Transcriptional regulator, LysR family compare
PP_4660 +0.4 1.1 Transcriptional regulator, LysR family compare
PP_1947 +0.4 1.7 conserved protein of unknown function compare
PP_1112 +0.4 2.7 conserved membrane protein of unknown function compare
PP_2941 +0.4 1.9 conserved protein of unknown function compare
PP_2511 +0.4 2.0 conserved protein of unknown function compare
PP_0663 +0.4 1.5 Transcriptional regulator, AsnC family compare
PP_0275 +0.4 2.3 conserved protein of unknown function compare
PP_5243 +0.4 1.3 putative hydrolase compare
PP_3036 +0.4 1.3 conserved protein of unknown function compare
PP_0129 +0.4 3.1 GGDEF domain protein compare
PP_4739 +0.4 1.0 conserved protein of unknown function compare
PP_3824 +0.4 0.6 conserved exported protein of unknown function compare
PP_3478 +0.4 2.2 putative Secretion protein compare
PP_0893 +0.4 1.1 ThiJ/PfpI family protein compare
PP_3480 +0.4 1.4 conserved protein of unknown function compare
PP_5201 +0.4 1.5 conserved protein of unknown function, UPF0149 family compare
PP_5707 +0.4 1.4 conserved protein of unknown function compare
PP_4217 +0.4 3.9 outer membrane ferripyoverdine receptor FpvA, TonB-dependent compare
PP_3469 +0.4 1.3 conserved protein of unknown function compare
PP_1795 +0.4 2.9 conserved protein of unknown function compare
PP_5383 +0.4 2.1 transcriptional activator protein compare
PP_5537 +0.4 1.1 conserved membrane protein of unknown function compare
PP_4151 +0.4 1.9 Excisionase domain protein compare
PP_1063 +0.4 2.5 DNA-binding transcriptional regulator, homocysteine-binding compare
PP_0618 +0.4 2.5 Branched-chain amino acid ABC transporter, permease protein compare
PP_2581 +0.4 0.8 conserved protein of unknown function compare
PP_0680 +0.4 3.3 ATP-dependent protease-like protein compare
PP_0416 +0.4 1.8 Phosphoglycolate phosphatase compare
PP_3840 +0.4 0.7 conserved protein of unknown function compare
PP_5377 +0.4 1.2 conserved hypothetical protein compare
PP_2983 +0.4 2.1 conserved protein of unknown function compare
PP_5478 +0.4 1.9 conserved protein of unknown function compare
PP_4447 +0.4 1.8 conserved protein of unknown function compare
PP_3831 +0.4 1.8 conserved protein of unknown function compare
PP_4686 +0.4 2.5 putative lipoprotein compare
PP_5066 +0.4 1.4 K(+)/H(+) antiporter NhaP2 compare
PP_1479 +0.4 1.4 HicB protein compare
PP_3672 +0.4 1.3 conserved protein of unknown function compare
PP_5427 +0.4 1.3 conserved exported protein of unknown function compare
PP_4262 +0.4 0.5 Cytochrome oxidase maturation protein, cbb3-type compare
PP_2695 +0.4 2.0 Transcriptional regulator, LysR family compare
PP_1422 +0.4 1.4 conserved protein of unknown function compare
PP_4256 +0.4 1.4 cytochrome c oxidase subunit, cbb3-type compare
PP_1111 +0.4 1.7 putative Synthetase compare
PP_5248 +0.4 0.5 putative hydrolase compare
PP_4247 +0.4 0.7 Exonuclease compare
PP_3565 +0.4 1.4 Transporter, LysE family compare
PP_5568 +0.4 1.9 conserved membrane protein of unknown function compare
PP_1275 +0.4 1.0 conserved protein of unknown function compare
PP_2504 +0.4 1.4 putative tautomerase K2 compare


Specific Phenotypes

None in this experiment

For Pseudomonas putida KT2440 in soil experiments

For soil Soil=PNNL_Prosser_PlotA_B_20191220; Sterility=sterile; Collection=outgrowth_in_LB; SoilTreatment=none; SoilTreatmentTime=144_hrs across organisms