Experiment set24IT060 for Pseudomonas putida KT2440

Compare to:

Soil=PNNL_Prosser_PlotA_B_20191220; Sterility=nonsterile; Collection=outgrowth_in_LB_2hrs_then_extra_outgrowth_in_LB; SoilTreatment=none; SoilTreatmentTime=72_hrs

200 most detrimental genes:

  gene name fitness t score description  
PP_1656 +3.5 10.8 ATP:GTP 3'-pyrophosphotransferase compare
PP_1655 +3.5 6.8 23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD compare
PP_1650 +3.5 31.5 Sensor protein GacS compare
PP_4099 +3.4 26.5 two-componenent system BarA/UvrY - regulatory subunit compare
PP_1269 +1.5 2.5 Universal stress protein family compare
PP_2060 +1.3 2.6 DNA-binding transcriptional dual regulator - SoxR-reversible one-electron oxidation of its [2Fe-2S] cluster, NADPH-dependent compare
PP_1054 +1.3 4.1 Type II secretion pathway protein XcpZ compare
PP_5471 +1.3 3.8 putative response regulator receiver protein compare
PP_1045 +1.3 3.8 Type II secretion pathway protein XcpP compare
PP_4171 +1.3 9.4 conserved exported protein of unknown function compare
PP_4797 +1.2 1.9 conserved protein of unknown function compare
PP_4660 +1.1 3.5 Transcriptional regulator, LysR family compare
PP_4373 +1.0 8.0 Transcriptional regulator FleQ compare
PP_2070 +1.0 3.0 Transcriptional regulator, AraC family compare
PP_0905 +1.0 2.7 conserved exported protein of unknown function compare
PP_5528 +1.0 2.4 conserved protein of unknown function compare
PP_4999 +1.0 0.5 dihydroorotase-like protein compare
PP_4227 +0.9 2.6 conserved protein of unknown function compare
PP_3824 +0.9 2.0 conserved exported protein of unknown function compare
PP_1000 +0.9 3.3 ornithine carbamoyltransferase, catabolic compare
PP_4799 +0.9 0.5 putative Muramoyltetrapeptide carboxypeptidase compare
PP_3460 +0.9 1.6 quinohemoprotein amine dehydrogenase, gamma subunit compare
PP_4271 +0.9 1.4 conserved protein of unknown function compare
PP_3726 +0.9 1.4 Enoyl-CoA hydratase/isomerase family protein compare
PP_t12 +0.9 1.3 tRNA-Thr compare
PP_5674 +0.9 3.3 conserved protein of unknown function compare
PP_4217 +0.9 8.0 outer membrane ferripyoverdine receptor FpvA, TonB-dependent compare
PP_5571 +0.9 1.5 conserved protein of unknown function compare
PP_4223 +0.9 2.5 diaminobutyrate-2-oxoglutarate transaminase compare
PP_0168 +0.8 7.9 putative surface adhesion protein compare
PP_4133 +0.8 2.5 Transcriptional regulator-related protein compare
PP_1237 +0.8 0.9 4-hydroxy-tetrahydrodipicolinate synthase compare
PP_5152 +0.8 2.5 conserved exported protein of unknown function compare
PP_2403 +0.8 0.7 Chemotaxis protein CheY compare
PP_0167 +0.8 6.3 Toxin secretion ATP-binding protein compare
PP_2152 +0.8 1.3 glycerophosphoryl diester phosphodiesterase compare
PP_1390 +0.8 2.9 conserved exported protein of unknown function compare
PP_0874 +0.8 2.5 conserved protein of unknown function compare
PP_3861 +0.8 2.7 Phage FluMu protein gp46 compare
PP_4817 +0.8 2.3 MaoC domain protein compare
PP_4631 +0.8 3.4 conserved protein of unknown function compare
PP_4225 +0.8 1.9 two component system DNA-binding transcriptional activator QseB compare
PP_1824 +0.7 1.5 Smr domain protein compare
PP_5670 +0.7 4.1 conserved protein of unknown function compare
PP_4254 +0.7 1.4 conserved protein of unknown function compare
PP_0166 +0.7 6.2 HlyD family secretion protein compare
PP_1113 +0.7 5.2 Pyridoxal-phosphate dependent enzyme family protein compare
PP_5201 +0.7 2.6 conserved protein of unknown function, UPF0149 family compare
PP_1548 +0.7 1.7 conserved protein of unknown function compare
PP_3312 +0.7 1.1 putative Heat shock protein compare
PP_5054 +0.7 2.3 glutaredoxin 3 compare
PP_3971 +0.7 1.7 conserved protein of unknown function compare
PP_5008 +0.7 1.5 Poly granule-associated protein compare
PP_5473 +0.7 2.0 putative transcriptional regulator, LuxR family compare
PP_5717 +0.7 1.9 conserved protein of unknown function compare
PP_1004 +0.7 2.1 conserved protein of unknown function compare
PP_2747 +0.7 2.0 conserved protein of unknown function compare
PP_2559 +0.7 2.4 Metalloprotease secretion protein compare
PP_2718 +0.7 2.5 arsenic resistance transcriptional regulator compare
PP_0274 +0.7 0.8 putative transcriptional regulator containing HTH domain compare
PP_4710 +0.7 4.1 tRNA pseudouridine 55 synthase compare
PP_2107 +0.7 0.7 conserved protein of unknown function compare
PP_5315 +0.7 2.1 Rubredoxin-1 compare
PP_0210 +0.7 3.0 putative Phycobiliprotein compare
PP_4723 +0.7 0.4 Carbamoyl-phosphate synthase large chain compare
PP_5022 +0.7 1.7 Glutamine transport ATP-binding protein GlnQ compare
PP_5621 +0.7 1.3 protein of unknown function compare
PP_4629 +0.7 3.3 Sensory box protein compare
PP_4519 +0.7 4.9 Agglutination protein compare
PP_4199 +0.6 1.0 putative Lipoprotein compare
PP_1829 +0.6 1.8 Hydrolase, alpha/beta fold family compare
PP_1408 +0.6 3.9 (R)-3-hydroxydecanoyl-ACP:CoA transacylase compare
PP_2229 +0.6 2.8 putative K(+)/H(+) antiporter subunit C compare
PP_0165 +0.6 5.3 GGDEF domain protein compare
PP_0856 +0.6 0.4 conserved lipoprotein of unknown function compare
PP_3320 +0.6 2.0 conserved protein of unknown function compare
PP_4771 +0.6 2.1 conserved membrane protein of unknown function compare
PP_3512 +0.6 2.4 conserved membrane protein of unknown function compare
PP_1415 +0.6 2.2 putative membrane associated enzyme subunit compare
PP_3407 +0.6 1.5 conserved protein of unknown function compare
PP_1683 +0.6 1.7 Transcriptional regulator, MarR family compare
PP_4701 +0.6 0.9 glucose-6-phosphate isomerase compare
PP_0273 +0.6 1.5 conserved protein of unknown function compare
PP_2504 +0.6 2.0 putative tautomerase K2 compare
PP_2510 +0.6 0.8 conserved protein of unknown function compare
PP_4406 +0.6 1.1 conserved protein of unknown function compare
PP_t29 +0.6 0.9 tRNA-Ala compare
PP_0627 +0.6 1.7 conserved protein of unknown function compare
PP_2826 +0.6 1.4 Transcriptional regulator MexT compare
PP_4136 +0.6 1.3 Transcriptional regulator, LuxR family compare
PP_5486 +0.6 1.3 conserved protein of unknown function compare
PP_1099 +0.6 1.6 Cold shock protein CapB compare
PP_2972 +0.6 1.2 conserved protein of unknown function compare
PP_4531 +0.6 1.7 conserved exported protein of unknown function compare
PP_1699 +0.6 2.6 2-pyrone-4,6-dicarboxylic acid hydrolase compare
PP_0848 +0.6 1.2 donor of Fe2+ and regulator of cysteine desulfurase activity compare
PP_1353 +0.6 0.9 conserved membrane protein of unknown function compare
PP_0007 +0.6 1.3 conserved hypothetical protein compare
PP_1706 +0.6 1.8 Nitrite reductase compare
PP_2889 +0.6 2.8 putative Transmembrane regulator PrtR compare
PP_4792 +0.6 1.1 conserved exported protein of unknown function compare
PP_2765 +0.6 1.2 putative Sulfonate monooxygenase MsuD compare
PP_5603 +0.6 1.8 putative FAD dependent oxidoreductase compare
PP_2497 +0.6 1.6 conserved protein of unknown function compare
PP_0566 +0.6 0.9 translation-related factor compare
PP_1439 +0.6 1.2 conserved exported protein of unknown function compare
PP_5093 +0.6 1.2 twitching motility protein compare
PP_3384 +0.6 2.0 gluconate 2-dehydrogenase gamma subunit compare
PP_3098 +0.6 0.8 conserved protein of unknown function compare
PP_1076 +0.6 1.8 aquaglyceroporin compare
PP_0195 +0.6 1.5 conserved protein of unknown function compare
PP_5469 +0.6 2.7 putative SAM-dependent methyltransferase compare
PP_3496 +0.5 1.5 Endoribonuclease L-PSP compare
PP_1800 +0.5 3.9 Oxidoreductase Rmd compare
PP_3565 +0.5 3.1 Transporter, LysE family compare
PP_0608 +0.5 2.7 putative type 4 fimbrial biogenesis protein compare
PP_5167 +0.5 1.5 conserved hypothetical protein compare
PP_5659 +0.5 1.1 protein of unknown function compare
PP_1110 +0.5 1.0 serine acetyltransferase compare
PP_2327 +0.5 1.9 transcriptional dual regulator / CysB-O-acetyl-L-serine compare
PP_0916 +0.5 1.9 Amino acid transporter LysE compare
PP_0425 +0.5 1.5 conserved protein of unknown function compare
PP_5393 +0.5 0.8 putative metal-binding chaperone compare
PP_2536 +0.5 2.1 Glutathione S-transferase family protein compare
PP_2101 +0.5 2.3 DNA-binding response regulator in two-component regulatory system with EvgS compare
PP_5588 +0.5 1.6 conserved protein of unknown function compare
PP_1554 +0.5 1.6 conserved protein of unknown function compare
PP_1124 +0.5 1.2 conserved membrane protein of unknown function compare
PP_0025 +0.5 0.8 hypothetical protein compare
PP_t49 +0.5 1.0 tRNA-Met compare
PP_5446 +0.5 2.0 protein of unknown function compare
PP_5080 +0.5 1.7 type 4 pili biogenesis protein compare
PP_4669 +0.5 1.2 OmpA family protein compare
PP_0947 +0.5 2.2 conserved membrane protein of unknown function compare
PP_0283 +0.5 2.2 Arginine/ornithine transport ATP-binding protein AotP compare
PP_0948 +0.5 1.1 Phosphocarrier protein HPr compare
PP_2358 +0.5 1.5 putative Type 1 pili subunit CsuA/B protein compare
PP_3580 +0.5 1.6 conserved protein of unknown function compare
PP_5058 +0.5 1.7 Carboxy-terminal-processing protease compare
PP_0979 +0.5 1.3 DNA polymerase III subunit chi compare
PP_5140 +0.5 1.2 Transcriptional regulator, MerR family compare
PP_4591 +0.5 1.7 Ribonuclease D compare
PP_1654 +0.5 0.4 cysteine synthase B compare
PP_5690 +0.5 2.0 conserved protein of unknown function compare
PP_2000 +0.5 0.7 amidophosphoribosyl transferase compare
PP_1038 +0.5 1.2 conserved protein of unknown function compare
PP_2073 +0.5 1.1 Acetyltransferase, GNAT family compare
PP_0762 +0.5 1.5 Glycerate dehydrogenase compare
PP_0738 +0.5 1.8 conserved protein of unknown function compare
PP_5053 +0.5 2.2 Protein-export protein SecB compare
PP_0999 +0.5 1.5 carbamate kinase compare
PP_4582 +0.5 2.0 conserved membrane protein of unknown function compare
PP_2726 +0.5 1.4 conserved membrane protein of unknown function compare
PP_3908 +0.5 1.4 conserved protein of unknown function compare
PP_4469 +0.5 2.4 ribose 1,5-bisphosphate phosphokinase compare
PP_3401 +0.5 1.7 conserved protein of unknown function compare
PP_5457 +0.5 2.0 conserved protein of unknown function compare
PP_1299 +0.5 2.3 putative amino acid ABC transporter - membrane subunit compare
PP_0532 +0.5 1.8 conserved exported protein of unknown function compare
PP_1002 +0.5 1.7 arginine/ornithine antiporter compare
PP_1454 +0.5 0.9 conserved protein of unknown function compare
PP_2976 +0.5 0.4 putative transposase compare
PP_3035 +0.5 1.3 conserved protein of unknown function compare
PP_0326 +0.5 1.8 sarcosine oxidase subunit gamma compare
PP_5256 +0.5 1.3 Cyclic nucleotide-binding protein compare
PP_1783 +0.5 0.6 dTDP-glucose pyrophosphorylase compare
PP_3333 +0.5 1.4 conserved protein of unknown function compare
PP_4205 +0.5 2.1 mRNA interferase MqsR of the MqsA-MqsR antitoxin/toxin complex and DNA-binding transcriptional repressor compare
PP_1799 +0.5 3.4 GDP-mannose 4,6-dehydratase compare
PP_1543 +0.5 2.0 conserved protein of unknown function compare
PP_2003 +0.5 1.2 conserved protein of unknown function compare
PP_5161 +0.5 2.0 putative lysophospholipase compare
PP_4100 +0.5 2.4 Transcriptional regulator, Cro/CI family compare
PP_5427 +0.5 1.7 conserved exported protein of unknown function compare
PP_3730 +0.4 1.3 Transcriptional regulatory protein AruR compare
PP_1679 +0.4 0.9 Nicotinate-nucleotide--dimethylbenzimidazole phosphoribosyltransferase compare
PP_5618 +0.4 2.1 putative Cro/CI transcriptional regulator compare
PP_1014 +0.4 2.7 aldose-ketose isomerase compare
PP_1190 +0.4 2.1 conserved protein of unknown function compare
PP_0719 +0.4 0.3 ribosome-associated potassium-dependent informational ATP/GTPase compare
PP_2643 +0.4 1.8 aromatic acid chemoreceptor compare
PP_2705 +0.4 2.1 conserved protein of unknown function compare
PP_0821 +0.4 1.1 conserved exported protein of unknown function compare
PP_1109 +0.4 3.6 Transcriptional regulator, GntR family compare
PP_5579 +0.4 1.6 conserved protein of unknown function compare
PP_0640 +0.4 1.0 conserved protein of unknown function compare
PP_5240 +0.4 1.2 Response regulator compare
PP_5456 +0.4 0.8 conserved protein of unknown function compare
PP_2772 +0.4 1.9 putative Monooxygenase compare
PP_4230 +0.4 2.2 conserved exported protein of unknown function compare
PP_3618 +0.4 2.6 conserved protein of unknown function compare
PP_0787 +0.4 1.1 quinolinate phosphoribosyltransferase (decarboxylating) monomer compare
PP_0086 +0.4 0.8 conserved protein of unknown function compare
PP_5131 +0.4 2.3 sodium-cystine symporter compare
PP_2760 +0.4 1.5 putative ribose transport permease protein compare
PP_5073 +0.4 1.1 conserved exported protein of unknown function compare
PP_4829 +0.4 1.6 putative precorrin-3B synthase compare
PP_1112 +0.4 2.7 conserved membrane protein of unknown function compare
PP_4156 +0.4 1.5 Transcriptional regulator, LysR family compare
PP_3504 +0.4 1.9 conserved protein of unknown function compare


Specific Phenotypes

None in this experiment

For Pseudomonas putida KT2440 in soil experiments

For soil Soil=PNNL_Prosser_PlotA_B_20191220; Sterility=nonsterile; Collection=outgrowth_in_LB_2hrs_then_extra_outgrowth_in_LB; SoilTreatment=none; SoilTreatmentTime=72_hrs across organisms