Experiment set24IT059 for Pseudomonas putida KT2440

Compare to:

Soil=PNNL_Prosser_PlotA_B_20191220; Sterility=nonsterile; Collection=outgrowth_in_LB_2hrs_then_extra_outgrowth_in_LB; SoilTreatment=none; SoilTreatmentTime=72_hrs

200 most detrimental genes:

  gene name fitness t score description  
PP_1656 +3.5 9.9 ATP:GTP 3'-pyrophosphotransferase compare
PP_1650 +3.3 21.3 Sensor protein GacS compare
PP_4099 +3.0 17.6 two-componenent system BarA/UvrY - regulatory subunit compare
PP_1655 +3.0 6.7 23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD compare
PP_0319 +1.3 2.4 conserved protein of unknown function compare
PP_5054 +1.3 1.9 glutaredoxin 3 compare
PP_4171 +1.3 9.7 conserved exported protein of unknown function compare
PP_4268 +1.3 1.3 nucleoid-associated broad specificity regulator compare
PP_2999 +1.2 2.5 Glyoxalase family protein compare
PP_4561 +1.1 1.6 stress response protein compare
PP_3398 +1.1 2.2 putative Curli fiber surface-exposed nucleator CsgB compare
PP_5571 +1.1 1.9 conserved protein of unknown function compare
PP_0685 +1.1 3.7 conserved protein of unknown function compare
PP_0167 +1.0 8.6 Toxin secretion ATP-binding protein compare
PP_2747 +1.0 1.1 conserved protein of unknown function compare
PP_0166 +1.0 7.3 HlyD family secretion protein compare
PP_0168 +1.0 9.1 putative surface adhesion protein compare
PP_1099 +1.0 2.6 Cold shock protein CapB compare
PP_4373 +1.0 6.4 Transcriptional regulator FleQ compare
PP_4133 +1.0 1.6 Transcriptional regulator-related protein compare
PP_4999 +0.9 0.5 dihydroorotase-like protein compare
PP_1190 +0.9 2.8 conserved protein of unknown function compare
PP_0001 +0.9 1.1 probable chromosome-partitioning protein compare
PP_0165 +0.9 7.2 GGDEF domain protein compare
PP_4217 +0.9 8.0 outer membrane ferripyoverdine receptor FpvA, TonB-dependent compare
PP_4799 +0.9 0.4 putative Muramoyltetrapeptide carboxypeptidase compare
PP_4519 +0.9 7.0 Agglutination protein compare
PP_1824 +0.9 1.4 Smr domain protein compare
PP_1562 +0.9 1.6 putative Phage terminase, small subunit compare
PP_0195 +0.9 1.9 conserved protein of unknown function compare
PP_5167 +0.8 4.0 conserved hypothetical protein compare
PP_2309 +0.8 1.4 conserved protein of unknown function compare
PP_5267 +0.8 1.0 putative cytochrome c5 compare
PP_4227 +0.8 1.5 conserved protein of unknown function compare
PP_0856 +0.8 0.8 conserved lipoprotein of unknown function compare
PP_1048 +0.8 1.3 putative protein secretion protein for export compare
PP_4797 +0.8 1.7 conserved protein of unknown function compare
PP_3392 +0.8 1.5 conserved protein of unknown function compare
PP_2898 +0.8 1.2 conserved exported protein of unknown function compare
PP_0893 +0.8 2.1 ThiJ/PfpI family protein compare
PP_0794 +0.8 2.6 1-phosphofructokinase monomer compare
PP_2581 +0.8 0.8 conserved protein of unknown function compare
PP_3971 +0.8 1.2 conserved protein of unknown function compare
PP_t29 +0.8 1.6 tRNA-Ala compare
PP_t49 +0.8 3.4 tRNA-Met compare
PP_5654 +0.7 1.3 putative phosphotriesterase compare
PP_5453 +0.7 1.0 conserved protein of unknown function compare
PP_2510 +0.7 1.7 conserved protein of unknown function compare
PP_4254 +0.7 1.4 conserved protein of unknown function compare
PP_2794 +0.7 1.4 Oxidoreductase, short chain dehydrogenase/reductase family compare
PP_3904 +0.7 1.3 conserved protein of unknown function compare
PP_3197 +0.7 2.9 Glyoxalase family protein compare
PP_1501 +0.7 2.7 conserved protein of unknown function compare
PP_0900 +0.7 1.6 PAP2 family protein compare
PP_2229 +0.7 2.2 putative K(+)/H(+) antiporter subunit C compare
PP_1353 +0.7 1.0 conserved membrane protein of unknown function compare
PP_5156 +0.7 1.6 conserved exported protein of unknown function compare
PP_2768 +0.7 2.1 putative Branched-chain amino acid ABC transporter, permease protein compare
PP_2889 +0.7 3.0 putative Transmembrane regulator PrtR compare
PP_4710 +0.7 3.7 tRNA pseudouridine 55 synthase compare
PP_2159 +0.6 2.3 Copper-binding protein, plastocyanin/azurin family compare
PP_3035 +0.6 1.9 conserved protein of unknown function compare
PP_4723 +0.6 0.4 Carbamoyl-phosphate synthase large chain compare
PP_1397 +0.6 1.5 conserved protein of unknown function compare
PP_1075 +0.6 2.9 glycerol kinase compare
PP_5080 +0.6 2.2 type 4 pili biogenesis protein compare
PP_5619 +0.6 1.7 protein of unknown function compare
PP_3951 +0.6 2.1 3-oxoadipate CoA-transferase subunit A compare
PP_1922 +0.6 1.9 conserved protein of unknown function compare
PP_0905 +0.6 1.5 conserved exported protein of unknown function compare
PP_1054 +0.6 0.9 Type II secretion pathway protein XcpZ compare
PP_4196 +0.6 1.3 conserved exported protein of unknown function compare
PP_0916 +0.6 1.1 Amino acid transporter LysE compare
PP_3245 +0.6 1.1 conserved protein of unknown function compare
PP_5659 +0.6 2.1 protein of unknown function compare
PP_0241 +0.6 1.2 Transporter compare
PP_5227 +0.6 2.9 diaminopimelate decarboxylase compare
PP_5201 +0.6 1.0 conserved protein of unknown function, UPF0149 family compare
PP_2972 +0.6 1.9 conserved protein of unknown function compare
PP_2978 +0.6 1.8 conserved protein of unknown function compare
PP_2899 +0.6 0.8 conserved exported protein of unknown function compare
PP_5008 +0.6 0.9 Poly granule-associated protein compare
PP_2575 +0.6 1.0 conserved exported protein of unknown function compare
PP_3496 +0.6 1.6 Endoribonuclease L-PSP compare
PP_5640 +0.6 1.2 conserved protein of unknown function compare
PP_2530 +0.6 1.8 conserved protein of unknown function compare
PP_0210 +0.6 1.7 putative Phycobiliprotein compare
PP_4697 +0.6 1.7 poly(A) polymerase compare
PP_5248 +0.6 0.8 putative hydrolase compare
PP_2615 +0.6 1.8 hemolysin-coregulated protein compare
PP_5429 +0.6 2.0 protein of unknown function compare
PP_5487 +0.6 1.9 conserved protein of unknown function compare
PP_4273 +0.6 1.1 Transcriptional regulator, MerR family compare
PP_0945 +0.5 1.5 conserved protein of unknown function compare
PP_2231 +0.5 1.0 putative permease of the drug/metabolite transporter (DMT) superfamily compare
PP_1122 +0.5 1.2 OmpA family protein compare
PP_2186 +0.5 1.2 putative Formate dehydrogenase, delta subunit compare
PP_2067 +0.5 1.8 putative EmrB/QacA family drug resistance transporter compare
PP_4961 +0.5 1.1 putative Lipoprotein compare
PP_1193 +0.5 1.9 conserved membrane protein of unknown function compare
PP_4660 +0.5 1.7 Transcriptional regulator, LysR family compare
PP_2189 +0.5 1.7 conserved protein of unknown function compare
PP_1004 +0.5 1.0 conserved protein of unknown function compare
PP_5725 +0.5 2.0 protein of unknown function compare
PP_4246 +0.5 3.1 Periplasmic binding protein compare
PP_4452 +0.5 2.3 NAD/NADP octopine/nopaline dehydrogenase family protein compare
PP_2748 +0.5 1.4 putative Branched-chain amino acid ABC transporter, ATP-binding protein compare
PP_4957 +0.5 1.2 conserved protein of unknown function compare
PP_4974 +0.5 2.3 NhaP-type Na+/H+ and K+/H+ antiporters compare
PP_0258 +0.5 1.9 regulator of murein cross-linking compare
PP_5256 +0.5 1.3 Cyclic nucleotide-binding protein compare
PP_2950 +0.5 1.8 conserved protein of unknown function compare
PP_3730 +0.5 1.4 Transcriptional regulatory protein AruR compare
PP_4223 +0.5 1.4 diaminobutyrate-2-oxoglutarate transaminase compare
PP_0821 +0.5 1.2 conserved exported protein of unknown function compare
PP_1041 +0.5 1.1 twin arginine protein export complex subunit compare
PP_3378 +0.5 1.3 putative 2-ketogluconokinase compare
PP_2118 +0.5 1.1 conserved protein of unknown function compare
PP_2535 +0.5 2.2 putative inner membrane transport protein compare
PP_4423 +0.5 2.4 conserved protein of unknown function compare
PP_1481 +0.5 2.9 medium chain aldehyde dehydrogenase compare
PP_1111 +0.5 2.3 putative Synthetase compare
PP_4748 +0.5 2.6 Amino acid ABC transporter, periplasmic amino acid-binding protein compare
PP_2499 +0.5 0.6 conserved protein of unknown function compare
PP_2970 +0.5 0.9 conserved exported protein of unknown function compare
PP_3766 +0.5 1.0 Lactoylglutathione lyase compare
PP_1574 +0.5 1.9 conserved protein of unknown function compare
PP_3121 +0.5 1.6 transcriptional regulator, LysR family compare
PP_3924 +0.5 1.3 conserved protein of unknown function compare
PP_1211 +0.5 1.7 conserved protein of unknown function compare
PP_3617 +0.5 2.0 conserved membrane protein of unknown function compare
PP_3346 +0.5 1.4 Nickel transporter ATP-binding protein compare
PP_0141 +0.5 1.9 putative ABC transporter, ATP-binding protein compare
PP_1632 +0.5 1.0 conserved protein of unknown function compare
PP_4959 +0.5 3.3 diguanylate cyclase compare
PP_2432 +0.5 2.3 6,7-dihydropteridine reductase compare
PP_2497 +0.5 0.4 conserved protein of unknown function compare
PP_4921 +0.5 2.4 Transporter, NCS1 nucleoside transporter family compare
PP_0505 +0.5 2.1 conserved protein of unknown function compare
PP_0640 +0.5 1.1 conserved protein of unknown function compare
PP_1155 +0.5 2.8 YaiC/YhcK/ArdA family protein compare
PP_0880 +0.5 1.4 dipeptide ABC transporter - putative membrane subunit compare
PP_1713 +0.5 0.5 Transcriptional regulator PcaQ compare
PP_0649 +0.5 1.5 MutT/nudix family protein compare
PP_3831 +0.5 2.2 conserved protein of unknown function compare
PP_3866 +0.5 1.1 conserved protein of unknown function compare
PP_2403 +0.5 0.9 Chemotaxis protein CheY compare
PP_3061 +0.4 1.4 conserved protein of unknown function compare
PP_3037 +0.4 1.2 C4-type zinc finger protein, DksA/TraR family compare
PP_0407 +0.4 1.6 DnaJ-like protein DjlA compare
PP_5053 +0.4 1.7 Protein-export protein SecB compare
PP_2277 +0.4 2.3 conserved protein of unknown function compare
PP_5709 +0.4 2.7 protein of unknown function compare
PP_1113 +0.4 2.7 Pyridoxal-phosphate dependent enzyme family protein compare
PP_2756 +0.4 1.3 conserved protein of unknown function compare
PP_2036 +0.4 2.3 putative 4-hydroxy-tetrahydrodipicolinate synthase compare
PP_2960 +0.4 1.0 transcriptional regulator, AraC family compare
PP_4560 +0.4 0.8 putative Ribonuclease BN compare
PP_3589 +0.4 2.0 serine:H+ symport permease, threonine-insensitive compare
PP_3303 +0.4 1.6 3-oxoacyl-[acyl-carrier-protein] synthase 2 compare
PP_4126 +0.4 0.5 NADH-quinone oxidoreductase subunit I compare
PP_0827 +0.4 1.0 putative phosphonate transport system permease protein PtxC compare
PP_5430 +0.4 1.4 protein of unknown function compare
PP_2083 +0.4 1.6 putative Lipase compare
PP_4956 +0.4 2.3 putative acyltransferase compare
PP_5477 +0.4 1.6 conserved protein of unknown function compare
PP_0719 +0.4 0.3 ribosome-associated potassium-dependent informational ATP/GTPase compare
PP_0886 +0.4 1.1 conserved exported protein of unknown function compare
PP_2441 +0.4 0.7 conserved protein of unknown function compare
PP_3265 +0.4 1.0 putative phosphohydrolase of unknown function compare
PP_5042 +0.4 1.7 conserved protein of unknown function compare
PP_2764 +0.4 1.6 FMN reductase (NADPH) compare
PP_3761 +0.4 3.1 Sensor histidine kinase/response regulator compare
PP_0782 +0.4 0.9 conserved protein of unknown function compare
PP_3676 +0.4 2.1 conserved protein of unknown function compare
PP_4656 +0.4 1.7 protocatechuate 3,4-dioxygenase beta chain compare
PP_0153 +0.4 0.7 hypothetical protein compare
PP_3800 +0.4 1.5 conserved protein of unknown function compare
PP_2846 +0.4 1.6 urease accessory protein compare
PP_4256 +0.4 1.1 cytochrome c oxidase subunit, cbb3-type compare
PP_4531 +0.4 1.0 conserved exported protein of unknown function compare
PP_2255 +0.4 2.0 C4-dicarboxylate transport protein compare
PP_5623 +0.4 1.6 conserved membrane protein of unknown function compare
PP_1553 +0.4 0.6 conserved protein of unknown function compare
PP_4828 +0.4 0.8 Precorrin-8X methylmutase compare
PP_3312 +0.4 0.4 putative Heat shock protein compare
PP_1415 +0.4 0.9 putative membrane associated enzyme subunit compare
PP_4689 +0.4 1.9 Heme/hemin ABC transporter, periplasmic heme/hemin-binding protein compare
PP_1633 +0.4 1.2 conserved exported protein of unknown function compare
PP_2313 +0.4 1.0 conserved membrane protein of unknown function compare
PP_4155 +0.4 2.2 putative amine oxidase compare
PP_3186 +0.4 1.7 putative Transcriptional activator compare
PP_1170 +0.4 2.0 D-glucaro-1,5-lactonase UxuL (from data) compare
PP_4938 +0.4 2.3 putative Glycosyl transferase compare
PP_4238 +0.4 1.4 conserved protein of unknown function compare
PP_2817 +0.4 1.8 Multidrug efflux RND membrane fusion protein MexC compare
PP_1890 +0.4 1.9 Type 1 pili chaperone protein FimC compare
PP_3671 +0.4 2.1 Oxidoreductase, aldo/keto reductase family compare
PP_1082 +0.4 1.1 bacterioferritin compare
PP_5733 +0.4 2.1 putative metal-binding protein compare


Specific Phenotypes

None in this experiment

For Pseudomonas putida KT2440 in soil experiments

For soil Soil=PNNL_Prosser_PlotA_B_20191220; Sterility=nonsterile; Collection=outgrowth_in_LB_2hrs_then_extra_outgrowth_in_LB; SoilTreatment=none; SoilTreatmentTime=72_hrs across organisms