Experiment set24IT058 for Pseudomonas putida KT2440

Compare to:

Soil=PNNL_Prosser_PlotA_B_20191220; Sterility=nonsterile; Collection=outgrowth_in_LB_2hrs_then_extra_outgrowth_in_LB; SoilTreatment=none; SoilTreatmentTime=72_hrs

200 most detrimental genes:

  gene name fitness t score description  
PP_1656 +4.0 10.3 ATP:GTP 3'-pyrophosphotransferase compare
PP_1655 +3.6 6.2 23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD compare
PP_1650 +3.5 32.4 Sensor protein GacS compare
PP_4099 +3.5 26.2 two-componenent system BarA/UvrY - regulatory subunit compare
PP_1269 +2.3 3.9 Universal stress protein family compare
PP_4874 +1.7 2.0 50S ribosomal protein L9 compare
PP_1237 +1.6 1.3 4-hydroxy-tetrahydrodipicolinate synthase compare
PP_0166 +1.3 10.1 HlyD family secretion protein compare
PP_4171 +1.3 9.6 conserved exported protein of unknown function compare
PP_0167 +1.3 10.7 Toxin secretion ATP-binding protein compare
PP_0168 +1.2 11.7 putative surface adhesion protein compare
PP_0276 +1.2 2.2 Transcriptional regulator, Cro/CI family compare
PP_1575 +1.2 3.4 conserved protein of unknown function compare
PP_2889 +1.2 7.0 putative Transmembrane regulator PrtR compare
PP_0165 +1.2 10.2 GGDEF domain protein compare
PP_5248 +1.2 1.9 putative hydrolase compare
PP_4519 +1.1 9.6 Agglutination protein compare
PP_1054 +1.1 1.7 Type II secretion pathway protein XcpZ compare
PP_4196 +1.1 2.4 conserved exported protein of unknown function compare
PP_0775 +1.1 2.0 conserved protein of unknown function compare
PP_4999 +1.0 0.5 dihydroorotase-like protein compare
PP_2718 +1.0 2.8 arsenic resistance transcriptional regulator compare
PP_4828 +1.0 2.2 Precorrin-8X methylmutase compare
PP_4799 +1.0 0.5 putative Muramoyltetrapeptide carboxypeptidase compare
PP_4938 +1.0 5.9 putative Glycosyl transferase compare
PP_3098 +1.0 1.5 conserved protein of unknown function compare
PP_5053 +1.0 4.3 Protein-export protein SecB compare
PP_0550 +1.0 3.9 conserved protein of unknown function compare
PP_1002 +1.0 2.7 arginine/ornithine antiporter compare
PP_4217 +0.9 8.6 outer membrane ferripyoverdine receptor FpvA, TonB-dependent compare
PP_0959 +0.9 2.0 phospholipid ABC transporter compare
PP_2403 +0.9 1.8 Chemotaxis protein CheY compare
PP_3411 +0.9 1.6 conserved protein of unknown function compare
PP_0821 +0.9 2.4 conserved exported protein of unknown function compare
PP_5201 +0.9 3.1 conserved protein of unknown function, UPF0149 family compare
PP_3505 +0.9 2.4 conserved protein of unknown function compare
PP_2747 +0.9 1.1 conserved protein of unknown function compare
PP_0628 +0.9 2.0 conserved protein of unknown function compare
PP_5725 +0.9 3.4 protein of unknown function compare
PP_0794 +0.9 2.5 1-phosphofructokinase monomer compare
PP_2387 +0.8 2.7 conserved protein of unknown function compare
PP_2748 +0.8 2.3 putative Branched-chain amino acid ABC transporter, ATP-binding protein compare
PP_4710 +0.8 5.1 tRNA pseudouridine 55 synthase compare
PP_4959 +0.8 6.4 diguanylate cyclase compare
PP_2592 +0.8 2.2 Ferric siderophore ABC transporter, ATP-binding protein compare
PP_1190 +0.8 2.1 conserved protein of unknown function compare
PP_t49 +0.8 3.7 tRNA-Met compare
PP_5571 +0.8 1.3 conserved protein of unknown function compare
PP_4208 +0.8 4.6 RNA polymerase sigma-70 factor, ECF subfamily compare
PP_4246 +0.8 5.1 Periplasmic binding protein compare
PP_2118 +0.8 2.2 conserved protein of unknown function compare
PP_1076 +0.8 2.2 aquaglyceroporin compare
PP_1570 +0.8 1.3 Head-tail adaptor compare
PP_1987 +0.8 1.8 Methlytransferase, UbiE/COQ5 family compare
PP_5654 +0.8 1.6 putative phosphotriesterase compare
PP_5598 +0.8 2.0 conserved protein of unknown function compare
PP_3880 +0.8 1.6 conserved exported protein of unknown function compare
PP_3640 +0.7 1.5 Transcriptional regulator, AraC family compare
PP_4701 +0.7 1.0 glucose-6-phosphate isomerase compare
PP_2864 +0.7 2.2 conserved protein of unknown function compare
PP_t12 +0.7 0.9 tRNA-Thr compare
PP_5429 +0.7 3.5 protein of unknown function compare
PP_2107 +0.7 0.7 conserved protein of unknown function compare
PP_3892 +0.7 1.1 conserved protein of unknown function compare
PP_1605 +0.7 1.4 Ribonuclease HII compare
PP_0653 +0.7 1.3 conserved protein of unknown function compare
PP_0274 +0.7 0.9 putative transcriptional regulator containing HTH domain compare
PP_4373 +0.7 5.3 Transcriptional regulator FleQ compare
PP_3519 +0.7 1.0 putative Lipoprotein compare
PP_5295 +0.7 2.0 conserved protein of unknown function compare
PP_3761 +0.7 5.6 Sensor histidine kinase/response regulator compare
PP_4723 +0.7 0.5 Carbamoyl-phosphate synthase large chain compare
PP_4952 +0.7 1.3 ATP-dependent RNA helicase, specific for 23S rRNA compare
PP_2773 +0.7 0.7 conserved protein of unknown function compare
PP_3398 +0.7 1.4 putative Curli fiber surface-exposed nucleator CsgB compare
PP_0916 +0.7 2.4 Amino acid transporter LysE compare
PP_5640 +0.7 1.3 conserved protein of unknown function compare
PP_0188 +0.7 2.8 putative Uroporphyrin-III C-methyltransferase compare
PP_1824 +0.7 1.3 Smr domain protein compare
PP_0340 +0.7 4.8 Glutamate-ammonia-ligase adenylyltransferase compare
PP_2615 +0.7 2.2 hemolysin-coregulated protein compare
PP_0856 +0.7 0.4 conserved lipoprotein of unknown function compare
PP_5390 +0.7 2.2 conserved hypothetical protein compare
PP_2243 +0.7 2.5 conserved protein of unknown function compare
PP_5628 +0.7 1.5 conserved protein of unknown function compare
PP_2277 +0.7 3.0 conserved protein of unknown function compare
PP_1353 +0.6 1.0 conserved membrane protein of unknown function compare
PP_2899 +0.6 1.3 conserved exported protein of unknown function compare
PP_2814 +0.6 2.6 conserved protein of unknown function compare
PP_1381 +0.6 0.9 4-carboxymuconolactone decarboxylase compare
PP_0787 +0.6 1.9 quinolinate phosphoribosyltransferase (decarboxylating) monomer compare
PP_4406 +0.6 1.8 conserved protein of unknown function compare
PP_2907 +0.6 1.4 DNA-binding response regulator compare
PP_1566 +0.6 2.1 Peptidase U35 compare
PP_3138 +0.6 3.2 VirK domain protein compare
PP_2306 +0.6 1.1 conserved exported protein of unknown function compare
PP_1561 +0.6 2.7 putative Phage holin compare
PP_5427 +0.6 2.1 conserved exported protein of unknown function compare
PP_1479 +0.6 2.8 HicB protein compare
PP_3303 +0.6 2.6 3-oxoacyl-[acyl-carrier-protein] synthase 2 compare
PP_1691 +0.6 1.5 conserved protein of unknown function compare
PP_0685 +0.6 0.9 conserved protein of unknown function compare
PP_3233 +0.6 1.3 transcriptional regulator with 4Fe-4S cluster, Crp/Fnr family compare
PP_0182 +0.6 1.6 conserved protein of unknown function compare
PP_4254 +0.6 1.3 conserved protein of unknown function compare
PP_4916 +0.6 1.9 putative esterase compare
PP_2880 +0.6 1.5 Transcriptional regulator, TetR family compare
PP_1709 +0.6 1.6 Fumarylacetoacetate hydrolase family protein compare
PP_2200 +0.6 3.5 conserved protein of unknown function compare
PP_1113 +0.6 3.7 Pyridoxal-phosphate dependent enzyme family protein compare
PP_4743 +0.6 1.6 conserved protein of unknown function compare
PP_2309 +0.6 0.9 conserved protein of unknown function compare
PP_1408 +0.6 2.8 (R)-3-hydroxydecanoyl-ACP:CoA transacylase compare
PP_1208 +0.6 1.2 conserved protein of unknown function, SlyX family compare
PP_3806 +0.6 0.8 Hydrolase, isochorismatase family compare
PP_1903 +0.6 1.7 putative phosphotyrosine-protein phosphatase compare
PP_4534 +0.6 1.1 conserved protein of unknown function compare
PP_0135 +0.6 2.5 conserved exported protein of unknown function compare
PP_1999 +0.6 0.7 membrane protein required for colicin V production compare
PP_5681 +0.6 1.7 conserved protein of unknown function compare
PP_3512 +0.6 1.8 conserved membrane protein of unknown function compare
PP_5191 +0.6 1.2 conserved exported protein of unknown function compare
PP_4508 +0.6 2.8 putative transcriptional regulator, AraC family compare
PP_4936 +0.6 2.9 O-antigen polymerase compare
PP_1439 +0.6 1.2 conserved exported protein of unknown function compare
PP_2342 +0.6 2.0 conserved protein of unknown function compare
PP_0240 +0.6 1.3 Aliphatic sulfonates import ATP-binding protein SsuB compare
PP_4173 +0.6 3.2 Sensor histidine kinase/response regulator compare
PP_3488 +0.5 2.9 Sco1/SenC family protein compare
PP_0649 +0.5 2.9 MutT/nudix family protein compare
PP_2000 +0.5 0.9 amidophosphoribosyl transferase compare
PP_3935 +0.5 1.3 conserved protein of unknown function compare
PP_1468 +0.5 0.6 Tyrosine recombinase XerD compare
PP_2231 +0.5 1.0 putative permease of the drug/metabolite transporter (DMT) superfamily compare
PP_2738 +0.5 2.0 putative Transcriptional regulator compare
PP_2858 +0.5 1.7 conserved exported protein of unknown function compare
PP_3882 +0.5 2.9 putative Phage terminase, small subunit compare
PP_3898 +0.5 1.4 conserved protein of unknown function compare
PP_5441 +0.5 1.0 protein of unknown function compare
PP_3392 +0.5 0.9 conserved protein of unknown function compare
PP_3508 +0.5 1.5 Protein CobW compare
PP_4581 +0.5 1.1 putative amidotransferase compare
PP_2459 +0.5 1.2 ribose pyranase compare
PP_1947 +0.5 1.8 conserved protein of unknown function compare
PP_0566 +0.5 0.7 translation-related factor compare
PP_2327 +0.5 1.7 transcriptional dual regulator / CysB-O-acetyl-L-serine compare
PP_5603 +0.5 2.3 putative FAD dependent oxidoreductase compare
PP_3034 +0.5 1.1 putative Regulator protein compare
PP_5715 +0.5 2.4 protein of unknown function compare
PP_5705 +0.5 0.8 protein of unknown function compare
PP_4100 +0.5 2.5 Transcriptional regulator, Cro/CI family compare
PP_1045 +0.5 0.7 Type II secretion pathway protein XcpP compare
PP_3730 +0.5 1.3 Transcriptional regulatory protein AruR compare
PP_1004 +0.5 1.3 conserved protein of unknown function compare
PP_5437 +0.5 2.0 protein of unknown function compare
PP_5256 +0.5 1.8 Cyclic nucleotide-binding protein compare
PP_5216 +0.5 1.0 exopolyphosphatase compare
PP_4921 +0.5 2.2 Transporter, NCS1 nucleoside transporter family compare
PP_3369 +0.5 2.5 Transcriptional regulator, LysR family compare
PP_3314 +0.5 1.8 Heat shock protein, HSP20 family compare
PP_0593 +0.5 0.6 putative ribosome-binding factor compare
PP_4564 +0.5 1.7 putative Lipoprotein compare
PP_0326 +0.5 1.3 sarcosine oxidase subunit gamma compare
PP_3407 +0.5 1.3 conserved protein of unknown function compare
PP_5358 +0.5 2.0 conserved protein of unknown function compare
PP_5382 +0.5 2.1 putative exported protein compare
PP_1048 +0.5 1.3 putative protein secretion protein for export compare
PP_2388 +0.5 1.0 Transporter, LysE family compare
PP_5619 +0.5 1.2 protein of unknown function compare
PP_0874 +0.5 0.7 conserved protein of unknown function compare
PP_2269 +0.5 1.5 putative N-acetylmuramoyl-L-alanine amidase compare
PP_3040 +0.5 2.1 Pyocin R2_PP, holin compare
PP_3621 +0.5 1.9 vanillin dehydrogenase, iorA-like component (from data) compare
PP_2210 +0.5 1.8 LysR family transcriptional regulator compare
PP_2750 +0.5 1.6 putative Branched-chain amino acid ABC transporter, permease protein compare
PP_0627 +0.5 1.0 conserved protein of unknown function compare
PP_1001 +0.5 0.8 arginine deiminase compare
PP_3866 +0.5 1.7 conserved protein of unknown function compare
PP_3445 +0.5 2.0 conserved protein of unknown function compare
PP_4480 +0.5 2.3 arginine N-succinyltransferase, subunit alpha compare
PP_0092 +0.5 1.2 putative lipoprotein compare
PP_5476 +0.5 2.8 conserved protein of unknown function compare
PP_3888 +0.5 1.4 conserved protein of unknown function compare
PP_2575 +0.5 0.7 conserved exported protein of unknown function compare
PP_2385 +0.5 1.7 Branched-chain amino acid transport protein AzlC compare
PP_5003 +0.5 3.5 poly(3-hydroxyalkanoate) polymerase 1 compare
PP_0719 +0.5 0.3 ribosome-associated potassium-dependent informational ATP/GTPase compare
PP_3035 +0.5 1.3 conserved protein of unknown function compare
PP_4271 +0.5 0.6 conserved protein of unknown function compare
PP_2054 +0.5 0.9 putative DNA-binding transcriptional regulator compare
PP_4760 +0.5 1.3 Alcohol dehydrogenase, zinc-containing compare
PP_3095 +0.5 2.7 Protein ClpV1 compare
PP_5514 +0.5 1.3 conserved protein of unknown function compare
PP_2060 +0.5 1.1 DNA-binding transcriptional dual regulator - SoxR-reversible one-electron oxidation of its [2Fe-2S] cluster, NADPH-dependent compare
PP_2036 +0.5 2.4 putative 4-hydroxy-tetrahydrodipicolinate synthase compare
PP_2749 +0.5 2.2 putative Branched-chain amino acid ABC transporter, permease protein compare
PP_5690 +0.5 1.8 conserved protein of unknown function compare
PP_0273 +0.5 0.9 conserved protein of unknown function compare
PP_4424 +0.5 1.2 Uncharacterized HTH-type transcriptional regulator y4tD compare
PP_3589 +0.5 1.8 serine:H+ symport permease, threonine-insensitive compare


Specific Phenotypes

None in this experiment

For Pseudomonas putida KT2440 in soil experiments

For soil Soil=PNNL_Prosser_PlotA_B_20191220; Sterility=nonsterile; Collection=outgrowth_in_LB_2hrs_then_extra_outgrowth_in_LB; SoilTreatment=none; SoilTreatmentTime=72_hrs across organisms