Experiment set24IT056 for Pseudomonas putida KT2440

Compare to:

Soil=PNNL_Prosser_PlotA_B_20191220; Sterility=sterile; Collection=outgrowth_in_LB_2hrs_then_extra_outgrowth_in_LB; SoilTreatment=none; SoilTreatmentTime=72_hrs

200 most detrimental genes:

  gene name fitness t score description  
PP_4099 +4.4 34.5 two-componenent system BarA/UvrY - regulatory subunit compare
PP_1650 +4.4 39.0 Sensor protein GacS compare
PP_1656 +4.0 11.6 ATP:GTP 3'-pyrophosphotransferase compare
PP_1655 +3.5 6.5 23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD compare
PP_4171 +1.9 12.7 conserved exported protein of unknown function compare
PP_4999 +1.5 0.8 dihydroorotase-like protein compare
PP_4799 +1.5 0.7 putative Muramoyltetrapeptide carboxypeptidase compare
PP_1824 +1.4 3.3 Smr domain protein compare
PP_4734 +1.3 8.7 DNA-binding transcriptional dual regulator, LldR-L-lactate compare
PP_0856 +1.2 1.1 conserved lipoprotein of unknown function compare
PP_0167 +1.2 10.5 Toxin secretion ATP-binding protein compare
PP_0165 +1.2 9.7 GGDEF domain protein compare
PP_4723 +1.2 0.8 Carbamoyl-phosphate synthase large chain compare
PP_0168 +1.2 10.9 putative surface adhesion protein compare
PP_0574 +1.2 9.3 DNA-binding response regulator, LuxR family compare
PP_0166 +1.1 9.1 HlyD family secretion protein compare
PP_1041 +1.1 2.2 twin arginine protein export complex subunit compare
PP_4561 +1.1 1.5 stress response protein compare
PP_5053 +1.1 4.6 Protein-export protein SecB compare
PP_4246 +1.0 7.6 Periplasmic binding protein compare
PP_4981 +1.0 1.4 polyisoprene-binding protein, acidic stress response factor compare
PP_4254 +1.0 2.7 conserved protein of unknown function compare
PP_4373 +1.0 7.8 Transcriptional regulator FleQ compare
PP_1609 +1.0 2.1 conserved protein of unknown function compare
PP_0916 +1.0 2.6 Amino acid transporter LysE compare
PP_4519 +1.0 7.9 Agglutination protein compare
PP_2387 +1.0 3.8 conserved protein of unknown function compare
PP_1164 +1.0 2.8 Transcriptional regulator, LysR family compare
PP_4247 +1.0 1.9 Exonuclease compare
PP_4217 +0.9 8.6 outer membrane ferripyoverdine receptor FpvA, TonB-dependent compare
PP_3519 +0.9 1.4 putative Lipoprotein compare
PP_1353 +0.9 1.5 conserved membrane protein of unknown function compare
PP_2060 +0.9 2.3 DNA-binding transcriptional dual regulator - SoxR-reversible one-electron oxidation of its [2Fe-2S] cluster, NADPH-dependent compare
PP_t12 +0.9 1.3 tRNA-Thr compare
PP_3824 +0.9 2.0 conserved exported protein of unknown function compare
PP_4560 +0.9 2.0 putative Ribonuclease BN compare
PP_0719 +0.9 0.6 ribosome-associated potassium-dependent informational ATP/GTPase compare
PP_2889 +0.9 5.7 putative Transmembrane regulator PrtR compare
PP_5191 +0.9 2.8 conserved exported protein of unknown function compare
PP_1113 +0.9 6.4 Pyridoxal-phosphate dependent enzyme family protein compare
PP_4100 +0.9 3.6 Transcriptional regulator, Cro/CI family compare
PP_5429 +0.9 3.4 protein of unknown function compare
PP_2976 +0.9 1.5 putative transposase compare
PP_4874 +0.9 1.0 50S ribosomal protein L9 compare
PP_2793 +0.9 1.6 Acyl-CoA dehydrogenase family protein compare
PP_0340 +0.9 6.3 Glutamate-ammonia-ligase adenylyltransferase compare
PP_0283 +0.9 2.4 Arginine/ornithine transport ATP-binding protein AotP compare
PP_1654 +0.9 0.6 cysteine synthase B compare
PP_4959 +0.8 6.9 diguanylate cyclase compare
PP_3762 +0.8 2.4 Response regulator compare
PP_2899 +0.8 1.2 conserved exported protein of unknown function compare
PP_2337 +0.8 1.5 aconitate isomerase compare
PP_4265 +0.8 1.1 DNA-binding transcriptional dual regulator compare
PP_5054 +0.8 1.4 glutaredoxin 3 compare
PP_0035 +0.8 1.8 putative bactoprenol-linked glycose transferase compare
PP_3726 +0.8 1.2 Enoyl-CoA hydratase/isomerase family protein compare
PP_4238 +0.8 2.4 conserved protein of unknown function compare
PP_3312 +0.8 1.3 putative Heat shock protein compare
PP_5313 +0.8 2.1 DNA-binding protein HU-alpha compare
PP_3761 +0.8 6.7 Sensor histidine kinase/response regulator compare
PP_1110 +0.8 2.3 serine acetyltransferase compare
PP_5674 +0.8 2.0 conserved protein of unknown function compare
PP_5008 +0.8 1.2 Poly granule-associated protein compare
PP_2462 +0.8 1.0 conserved protein of unknown function compare
PP_0846 +0.8 1.1 DnaK-like molecular chaperone specific for IscU compare
PP_1664 +0.8 2.1 phosphoribosylglycinamide formyltransferase 1 compare
PP_2000 +0.8 1.1 amidophosphoribosyl transferase compare
PP_1744 +0.8 2.8 conserved exported protein of unknown function compare
PP_2640 +0.8 2.6 Acetyltransferase, GNAT family compare
PP_0339 +0.8 0.9 Pyruvate dehydrogenase E1 component compare
PP_5528 +0.8 1.5 conserved protein of unknown function compare
PP_1548 +0.8 2.5 conserved protein of unknown function compare
PP_5114 +0.7 1.4 putative adenine methyltransferase compare
PP_4227 +0.7 1.8 conserved protein of unknown function compare
PP_t49 +0.7 1.3 tRNA-Met compare
PP_2403 +0.7 1.5 Chemotaxis protein CheY compare
PP_4710 +0.7 5.0 tRNA pseudouridine 55 synthase compare
PP_4897 +0.7 1.7 N-acetylmuramoyl-L-alanine amidase compare
PP_1048 +0.7 1.3 putative protein secretion protein for export compare
PP_1122 +0.7 0.9 OmpA family protein compare
PP_0945 +0.7 3.0 conserved protein of unknown function compare
PP_4847 +0.7 2.5 chaperone modulatory of CbpA co-chaperone protein compare
PP_1528 +0.7 1.2 conserved protein of unknown function compare
PP_4952 +0.7 0.7 ATP-dependent RNA helicase, specific for 23S rRNA compare
PP_5471 +0.7 1.4 putative response regulator receiver protein compare
PP_1054 +0.7 1.3 Type II secretion pathway protein XcpZ compare
PP_3831 +0.7 2.7 conserved protein of unknown function compare
PP_1903 +0.7 2.1 putative phosphotyrosine-protein phosphatase compare
PP_2511 +0.7 2.0 conserved protein of unknown function compare
PP_4642 +0.7 1.0 Cyclic diguanosine monophosphate-binding protein compare
PP_0377 +0.7 1.8 coenzyme PQQ synthesis protein D compare
PP_4724 +0.7 0.4 Carbamoyl-phosphate synthase small chain compare
PP_0064 +0.7 1.7 conserved protein of unknown function compare
PP_5619 +0.6 2.7 protein of unknown function compare
PP_3407 +0.6 1.2 conserved protein of unknown function compare
PP_4073 +0.6 1.5 conserved exported protein of unknown function compare
PP_5487 +0.6 1.9 conserved protein of unknown function compare
PP_2121 +0.6 1.3 putative Lipoprotein compare
PP_0608 +0.6 3.7 putative type 4 fimbrial biogenesis protein compare
PP_5331 +0.6 1.8 Long-chain acyl-CoA thioester hydrolase compare
PP_2055 +0.6 2.0 putative isomerase compare
PP_5491 +0.6 2.3 conserved protein of unknown function with SEC-C motif domain compare
PP_1691 +0.6 2.1 conserved protein of unknown function compare
PP_0703 +0.6 1.5 putative Transmembrane sensor compare
PP_1568 +0.6 1.0 conserved protein of unknown function compare
PP_3265 +0.6 1.0 putative phosphohydrolase of unknown function compare
PP_2681 +0.6 1.3 coenzyme PQQ synthesis protein D compare
PP_5670 +0.6 1.9 conserved protein of unknown function compare
PP_1112 +0.6 3.3 conserved membrane protein of unknown function compare
PP_4568 +0.6 2.6 putative metabolite efflux pump compare
PP_2514 +0.6 2.0 4-carboxy-4-hydroxy-2-oxoadipic acid aldolase compare
PP_4629 +0.6 3.1 Sensory box protein compare
PP_3941 +0.6 2.7 maleamate amidohydrolase compare
PP_5571 +0.6 0.9 conserved protein of unknown function compare
PP_1300 +0.6 1.9 putative amino acid ABC transporter - ATP-binding subunit compare
PP_3906 +0.6 1.4 conserved protein of unknown function compare
PP_1204 +0.6 1.6 putative Lipoprotein compare
PP_3398 +0.6 1.2 putative Curli fiber surface-exposed nucleator CsgB compare
PP_0939 +0.6 2.4 Carbon-nitrogen hydrolase family protein compare
PP_5017 +0.6 0.9 Sec-independent protein translocase protein TatB compare
PP_1946 +0.6 2.7 Oxidoreductase, short chain dehydrogenase/reductase family compare
PP_0090 +0.6 1.6 conserved exported protein of unknown function compare
PP_2615 +0.6 1.4 hemolysin-coregulated protein compare
PP_1364 +0.6 3.6 conserved exported protein of unknown function compare
PP_1501 +0.6 1.7 conserved protein of unknown function compare
PP_0566 +0.6 0.8 translation-related factor compare
PP_1770 +0.5 1.4 3-phosphoshikimate 1-carboxyvinyltransferase compare
PP_0241 +0.5 1.0 Transporter compare
PP_2110 +0.5 1.2 putative ribosomal large subunit pseudouridine synthase compare
PP_4363 +0.5 3.6 Sensor histidine kinase/response regulator compare
PP_5706 +0.5 1.0 Sec translocation complex - SecG subunit compare
PP_3034 +0.5 1.8 putative Regulator protein compare
PP_2079 +0.5 2.3 conserved protein of unknown function compare
PP_5188 +0.5 2.5 putative transcriptional regulator (AsnC/Lrp family) compare
PP_1190 +0.5 1.7 conserved protein of unknown function compare
PP_0738 +0.5 2.2 conserved protein of unknown function compare
PP_1245 +0.5 2.1 conserved exported protein of unknown function compare
PP_0691 +0.5 0.4 Glutamate 5-kinase compare
PP_3217 +0.5 2.8 putative Periplasmic aliphatic sulfonate-binding protein compare
PP_1968 +0.5 2.0 TetR family transcriptional regulator compare
PP_0224 +0.5 2.2 Monooxygenase, DszC family compare
PP_2992 +0.5 2.3 conserved exported protein of unknown function compare
PP_4449 +0.5 1.8 conserved protein of unknown function compare
PP_2090 +0.5 2.0 Uroporphyrinogen-III C-methyltransferase compare
PP_2718 +0.5 0.8 arsenic resistance transcriptional regulator compare
PP_0210 +0.5 2.4 putative Phycobiliprotein compare
PP_2959 +0.5 1.9 Alkylhydroperoxidase AhpD domain protein compare
PP_4503 +0.5 1.1 DNA-binding response regulator compare
PP_2882 +0.5 1.3 putative 2-hydroxychromene-2-carboxylate isomerase compare
PP_5690 +0.5 2.5 conserved protein of unknown function compare
PP_1299 +0.5 2.6 putative amino acid ABC transporter - membrane subunit compare
PP_0250 +0.5 1.0 heat shock protein Hsp15 involved in ribosome recycling compare
PP_5675 +0.5 1.0 conserved protein of unknown function compare
PP_2384 +0.5 1.6 conserved membrane protein of unknown function compare
PP_0848 +0.5 0.8 donor of Fe2+ and regulator of cysteine desulfurase activity compare
PP_4173 +0.5 2.6 Sensor histidine kinase/response regulator compare
PP_5248 +0.5 0.9 putative hydrolase compare
PP_4240 +0.5 2.2 putative Microcin b17 processing protein mcbd compare
PP_4045 +0.5 1.3 conserved protein of unknown function compare
PP_1193 +0.5 2.0 conserved membrane protein of unknown function compare
PP_5020 +0.5 2.7 putative methyl-accepting chemotaxis protein compare
PP_0672 +0.5 3.6 Sensory box protein compare
PP_2388 +0.5 1.0 Transporter, LysE family compare
PP_0246 +0.5 1.7 two-component system DNA-binding response transcriptional dual regulator compare
PP_1947 +0.5 1.8 conserved protein of unknown function compare
PP_4133 +0.5 0.9 Transcriptional regulator-related protein compare
PP_1109 +0.5 3.6 Transcriptional regulator, GntR family compare
PP_4693 +0.5 1.4 RNA polymerase-binding transcription factor DksA compare
PP_2490 +0.5 1.8 Flavoprotein compare
PP_2748 +0.5 0.7 putative Branched-chain amino acid ABC transporter, ATP-binding protein compare
PP_2960 +0.5 1.5 transcriptional regulator, AraC family compare
PP_0258 +0.5 1.6 regulator of murein cross-linking compare
PP_1047 +0.5 1.8 putative protein secretion protein for export compare
PP_0828 +0.5 2.2 conserved membrane protein of unknown function compare
PP_5598 +0.5 1.3 conserved protein of unknown function compare
PP_0787 +0.5 1.8 quinolinate phosphoribosyltransferase (decarboxylating) monomer compare
PP_5288 +0.5 2.3 Phosphomannomutase/phosphoglucomutase compare
PP_2159 +0.5 1.7 Copper-binding protein, plastocyanin/azurin family compare
PP_2229 +0.5 1.6 putative K(+)/H(+) antiporter subunit C compare
PP_4151 +0.5 1.6 Excisionase domain protein compare
PP_2226 +0.5 2.0 putative K(+)/H(+) antiporter subunit F compare
PP_1310 +0.4 0.8 conserved hypothetical protein compare
PP_2768 +0.4 1.3 putative Branched-chain amino acid ABC transporter, permease protein compare
PP_0711 +0.4 1.1 putative hydrolase compare
PP_0223 +0.4 2.6 Monooxygenase, DszC family compare
PP_3512 +0.4 2.4 conserved membrane protein of unknown function compare
PP_4256 +0.4 1.3 cytochrome c oxidase subunit, cbb3-type compare
PP_1775 +0.4 2.6 Metallo-beta-lactamase family protein compare
PP_2677 +0.4 1.2 conserved exported protein of unknown function compare
PP_5714 +0.4 1.3 conserved protein of unknown function compare
PP_2510 +0.4 0.7 conserved protein of unknown function compare
PP_1564 +0.4 1.8 conserved exported protein of unknown function compare
PP_2231 +0.4 0.6 putative permease of the drug/metabolite transporter (DMT) superfamily compare
PP_3866 +0.4 1.0 conserved protein of unknown function compare
PP_2572 +0.4 2.4 conserved protein of unknown function compare
PP_3922 +0.4 2.5 putative inner membrane peptidase compare
PP_4660 +0.4 1.6 Transcriptional regulator, LysR family compare
PP_1326 +0.4 1.3 16S rRNA 2'-O-ribose C1402 methyltransferase compare
PP_0353 +0.4 1.8 Exonuclease compare
PP_5207 +0.4 2.5 ribosome-associated ATPase compare


Specific Phenotypes

None in this experiment

For Pseudomonas putida KT2440 in soil experiments

For soil Soil=PNNL_Prosser_PlotA_B_20191220; Sterility=sterile; Collection=outgrowth_in_LB_2hrs_then_extra_outgrowth_in_LB; SoilTreatment=none; SoilTreatmentTime=72_hrs across organisms