Experiment set24IT048 for Pseudomonas putida KT2440

Compare to:

Soil=PNNL_Prosser_PlotA_B_20191220; Sterility=nonsterile; Collection=outgrowth_in_LB; SoilTreatment=none; SoilTreatmentTime=72_hrs

200 most important genes:

  gene name fitness t score description  
PP_1623 -4.8 -6.1 RNA polymerase, sigma S (sigma 38) factor compare
PP_2903 -4.7 -3.2 peptidyl-prolyl cis-trans isomerase B (rotamase B) compare
PP_0164 -4.6 -3.2 conserved protein of unknown function compare
PP_0022 -4.2 -2.0 hypothetical protein compare
PP_4642 -4.1 -1.9 Cyclic diguanosine monophosphate-binding protein compare
PP_5652 -4.0 -2.7 conserved protein of unknown function, phage origin compare
PP_4726 -3.9 -2.7 Chaperone protein DnaJ compare
PP_2217 -3.8 -2.6 enoyl-CoA hydratase compare
PP_1898 -3.8 -2.6 MotA/TolQ/ExbB proton channel family protein compare
PP_4701 -3.8 -1.8 glucose-6-phosphate isomerase compare
PP_2031 -3.7 -2.9 conserved protein of unknown function compare
PP_0735 -3.6 -2.3 molybdopterin-synthase adenylyltransferase compare
PP_4058 -3.2 -7.6 1,4-alpha-glucan branching enzyme compare
PP_1528 -3.2 -2.1 conserved protein of unknown function compare
PP_4902 -3.1 -2.2 Oligoribonuclease compare
PP_1055 -3.1 -1.6 Type II secretion pathway protein GspN compare
PP_5185 -2.7 -4.5 acetylglutamate kinase-like protein (regulatory domain)/amino acid N-acetyltransferase compare
PP_0184 -2.7 -2.6 Argininosuccinate lyase compare
PP_0232 -2.6 -1.7 ATP-binding taurine transporter subunit compare
PP_0406 -2.5 -1.8 Nucleotidyltransferase family protein compare
PP_4008 -2.5 -5.4 ATP-dependent serine protease compare
PP_4004 -2.5 -4.4 DNA translocase FtsK compare
PP_3484 -2.5 -4.4 Response regulator receiver protein compare
PP_5569 -2.4 -2.5 protein of unknown function of phage origin compare
PP_2145 -2.3 -2.3 beta-N-acetylglucosaminidase compare
PP_1513 -2.3 -1.3 Ribosomal RNA small subunit methyltransferase J compare
PP_3798 -2.3 -4.2 conserved protein of unknown function compare
PP_4696 -2.3 -2.7 Nitrogen regulation protein NR(I) compare
PP_5445 -2.3 -2.7 conserved protein of unknown function compare
PP_1088 -2.2 -6.5 Argininosuccinate synthase compare
PP_2402 -2.2 -1.5 putative Sensor histidine kinase compare
PP_0673 -2.2 -2.2 conserved protein of unknown function compare
PP_4385 -2.2 -4.2 flagellar basal-body rod protein FlgG compare
PP_1734 -2.1 -2.9 Probable septum site-determining protein MinC compare
PP_1826 -2.1 -2.5 Hydrolase, isochorismatase family compare
PP_5289 -2.1 -2.5 Acetylglutamate kinase compare
PP_1778 -2.1 -4.5 Lipopolysaccharide ABC export system, permease protein compare
PP_4376 -2.1 -8.6 flagellar filament capping protein compare
PP_3926 -2.0 -1.8 short-chain dehydrogenase compare
PP_3449 -2.0 -2.3 conserved exported protein of unknown function compare
PP_4891 -2.0 -2.8 integral membrane ATP-dependent zinc metallopeptidase / HflK-HflC complex compare
PP_1468 -2.0 -2.4 Tyrosine recombinase XerD compare
PP_0292 -2.0 -2.6 1-(5-phosphoribosyl)-5-((5-phosphoribosylamino)methylideneamino)imidazole-4-carboxamide isomerase (EC 5.3.1.16) (from data) compare
PP_5007 -2.0 -2.6 Polyhydroxyalkanoate granule-associated protein GA2 compare
PP_3580 -2.0 -2.0 conserved protein of unknown function compare
PP_1493 -1.9 -3.0 chemotaxis response regulator protein-glutamate methylesterase of group 3 operon compare
PP_5456 -1.9 -1.8 conserved protein of unknown function compare
PP_4994 -1.9 -3.6 conserved protein of unknown function compare
PP_0405 -1.9 -6.3 conserved protein of unknown function compare
PP_1028 -1.8 -2.8 Transcriptional regulator, LysR family compare
PP_2883 -1.8 -2.1 conserved protein of unknown function compare
PP_1362 -1.8 -2.8 pyruvate kinase II compare
PP_5267 -1.8 -2.1 putative cytochrome c5 compare
PP_1521 -1.8 -3.5 conserved protein of unknown function compare
PP_4247 -1.8 -1.6 Exonuclease compare
PP_4261 -1.8 -3.8 cation-transporting P-type ATPase compare
PP_0852 -1.8 -3.0 Transcriptional regulator, Cro/CI family compare
PP_2028 -1.8 -2.7 conserved protein of unknown function containing tetratricopeptide (TPR) domain repeat compare
PP_4391 -1.8 -4.3 flagellar basal-body rod protein FlgB compare
PP_2280 -1.8 -2.0 conserved protein of unknown function compare
PP_0065 -1.7 -2.3 NAD-binding component of TrK potassium transporter compare
PP_1318 -1.7 -4.6 Cytochrome b compare
PP_4382 -1.7 -5.6 Peptidoglycan hydrolase FlgJ compare
PP_0547 -1.7 -2.9 UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl- meso-diaminopimelate ligase compare
PP_1319 -1.7 -3.8 Ubiquinol--cytochrome c reductase, cytochrome c1 compare
PP_5090 -1.7 -2.1 putative cell division protein compare
PP_1733 -1.7 -2.3 membrane ATPase of the MinC-MinD-MinE system compare
PP_4358 -1.7 -5.0 flagellar synthesis, switching and energizing component compare
PP_0435 -1.7 -5.8 Peptidase, M23/M37 family compare
PP_1763 -1.7 -2.5 putative oxidoreductase compare
PP_4266 -1.7 -2.9 Adenine phosphoribosyltransferase compare
PP_5198 -1.6 -2.5 conserved protein of unknown function compare
PP_0903 -1.6 -2.3 conserved protein of unknown function compare
PP_5100 -1.6 -2.7 dITP/XTP pyrophosphatase compare
PP_1036 -1.6 -6.0 membrane-bound lytic murein transglycosylase F compare
PP_3899 -1.6 -2.1 conserved protein of unknown function, hicB family compare
PP_4375 -1.6 -4.7 flagellar chaperone, inhibits premature FliC assembly compare
PP_2433 -1.6 -2.2 conserved protein of unknown function compare
PP_5661 -1.6 -2.6 putative lipoprotein compare
PP_4332 -1.6 -3.0 Chemotaxis protein CheW compare
PP_4342 -1.6 -1.9 flagellar synthesis regulator, putative ATPase compare
PP_2144 -1.6 -2.7 Transcriptional regulator, TetR family compare
PP_0775 -1.6 -1.9 conserved protein of unknown function compare
PP_0048 -1.6 -1.3 conserved protein of unknown function compare
PP_0949 -1.6 -3.0 putative ATP-binding protein UPF0042 compare
PP_4341 -1.6 -4.9 RNA polymerase sigma 28 (sigma F) factor for class III flagellar operons compare
PP_5548 -1.6 -2.0 protein of unknown function compare
PP_4361 -1.6 -3.7 Flagellar hook-length control protein FliK compare
PP_4367 -1.6 -2.3 Flagellar assembly protein FliH compare
PP_5310 -1.6 -4.2 junction-specific ATP-dependent DNA helicase compare
PP_5610 -1.6 -1.6 protein of unknown function compare
PP_2878 -1.5 -2.0 conserved protein of unknown function compare
PP_5337 -1.5 -3.4 LysR family transcriptional regulator compare
PP_2253 -1.5 -2.1 Transcriptional regulator, GntR family compare
PP_4384 -1.5 -5.3 Flagellar L-ring protein compare
PP_3245 -1.5 -1.4 conserved protein of unknown function compare
PP_4122 -1.5 -1.0 proton-pumping NADH:ubiquinone oxidoreductase, respiratory complex I, subunit E compare
PP_1216 -1.5 -1.7 Holliday junction ATP-dependent DNA helicase RuvA compare
PP_1779 -1.5 -3.5 Lipopolysaccharide ABC export system, ATP-binding protein compare
PP_5328 -1.5 -1.0 putative phosphate transport system permease protein compare
PP_1713 -1.5 -1.3 Transcriptional regulator PcaQ compare
PP_5748 -1.5 -1.3 cytochrome c heme lyase subunit compare
PP_4394 -1.5 -3.5 flagella basal body P-ring formation protein compare
PP_1325 -1.5 -4.7 putative lipoprotein compare
PP_2773 -1.5 -1.7 conserved protein of unknown function compare
PP_2509 -1.5 -1.9 conserved protein of unknown function compare
PP_4378 -1.5 -7.2 flagellin, filament structural protein compare
PP_0789 -1.5 -2.7 N-acetyl-anhydromuramyl-L-alanine-amidase compare
PP_5084 -1.5 -5.7 penicillin-insensitive transglycosylase/penicillin-sensitive transpeptidase compare
PP_5546 -1.5 -1.8 conserved protein of unknown function compare
PP_0951 -1.5 -4.0 Ribosome hibernation promoting factor compare
PP_4471 -1.4 -3.3 Magnesium transporter compare
PP_4370 -1.4 -2.9 Flagellar hook-basal body complex protein FliE compare
PP_2214 -1.4 -2.6 3-hydroxyacyl-CoA dehydrogenase type-2 compare
PP_4337 -1.4 -3.1 chemotaxis response regulator protein-glutamate methylesterase of group 1 operon compare
PP_0513 -1.4 -1.4 DNA-binding transcriptional repressor NrdR-Zn2+-ATP/dATP compare
PP_1068 -1.4 -2.9 glutamate / aspartate ABC transporter - ATP binding subunit compare
PP_3625 -1.4 -3.0 Transporter, LysE family compare
PP_4392 -1.4 -4.7 chemotaxis protein methyltransferase compare
PP_4355 -1.4 -1.2 flagellar export apparatus subunit compare
PP_1428 -1.4 -0.9 Sigma factor AlgU negative regulatory protein compare
PP_2720 -1.4 -1.1 conserved protein of unknown function compare
PP_2030 -1.4 -2.4 conserved protein of unknown function compare
PP_4892 -1.3 -2.7 integral membrane ATP-dependent zinc metallopeptidase / HflK-HflC complex compare
PP_1994 -1.3 -0.9 tRNA pseudouridine (38-40)synthase compare
PP_t13 -1.3 -1.4 tRNA-Lys compare
PP_4369 -1.3 -4.4 Flagellar M-ring protein compare
PP_2302 -1.3 -3.0 DNA-binding, ATP-dependent protease compare
PP_4262 -1.3 -1.8 Cytochrome oxidase maturation protein, cbb3-type compare
PP_3614 -1.3 -2.1 conserved membrane protein of unknown function compare
PP_2668 -1.3 -1.4 ABC efflux transporter, ATP-binding protein compare
PP_0123 -1.3 -5.4 DNA polymerase I, 5 compare
PP_0274 -1.3 -1.5 putative transcriptional regulator containing HTH domain compare
PP_3355 -1.3 -4.0 Beta-ketothiolase compare
PP_0607 -1.3 -2.2 putative Type IV pili biogenesis protein FimT compare
PP_4390 -1.3 -4.9 flagellar basal-body rod protein FlgC compare
PP_4824 -1.3 -2.9 Sensor histidine kinase/response regulator compare
PP_5162 -1.3 -2.6 conserved exported protein of unknown function compare
PP_0117 -1.3 -2.6 Zn(2+) ABC transporter - permease subunit compare
PP_0434 -1.3 -3.1 Anhydro-N-acetylmuramic acid kinase compare
PP_3924 -1.3 -1.7 conserved protein of unknown function compare
PP_4628 -1.3 -3.0 conserved protein of unknown function compare
PP_4250 -1.3 -4.7 cytochrome c oxidase subunit I, cbb3-type compare
PP_0395 -1.3 -6.2 putative type IV piliation protein compare
PP_2029 -1.3 -1.9 von Willebrand factor type A domain protein compare
PP_4505 -1.3 -3.1 Sensor histidine kinase compare
PP_5507 -1.3 -2.2 protein of unknown function compare
PP_4909 -1.3 -3.2 phosphoserine phosphatase compare
PP_2718 -1.3 -1.7 arsenic resistance transcriptional regulator compare
PP_4364 -1.3 -2.4 putative Anti-sigma F factor antagonist compare
PP_0218 -1.2 -4.2 Sensory box protein compare
PP_4380 -1.2 -6.3 Flagellar hook-associated protein FlgL compare
PP_0980 -1.2 -2.9 Probable cytosol aminopeptidase compare
PP_5230 -1.2 -2.0 Tyrosine recombinase XerC compare
PP_4386 -1.2 -2.6 flagellar basal-body rod protein FlgF compare
PP_0080 -1.2 -2.7 conserved protein of unknown function compare
PP_3596 -1.2 -3.1 D-lysine oxidase compare
PP_3045 -1.2 -3.9 putative ClpP protease compare
PP_5274 -1.2 -1.3 conserved protein of unknown function compare
PP_1632 -1.2 -1.0 conserved protein of unknown function compare
PP_3861 -1.2 -2.2 Phage FluMu protein gp46 compare
PP_4109 -1.2 -0.7 conserved protein of unknown function compare
PP_4366 -1.2 -5.1 flagellum-specific ATP synthase compare
PP_3434 -1.2 -1.8 conserved protein of unknown function compare
PP_0758 -1.2 -2.7 conserved protein of unknown function compare
PP_2371 -1.2 -2.8 Sulphite reductase hemoprotein, beta subunit compare
PP_3307 -1.2 -1.3 conserved protein of unknown function compare
PP_4403 -1.2 -3.0 Lipoamide acyltransferase component of branched-chain alpha-keto acid dehydrogenase complex compare
PP_1355 -1.2 -4.9 Muropeptide permease AmpG compare
PP_4778 -1.2 -2.6 23S rRNA pseudouridine 2457 synthase compare
PP_5217 -1.2 -6.4 Polyphosphate kinase compare
PP_4388 -1.2 -6.8 Flagellar hook protein FlgE compare
PP_4094 -1.2 -1.4 conserved protein of unknown function compare
PP_3314 -1.2 -1.6 Heat shock protein, HSP20 family compare
PP_4848 -1.2 -1.3 Curved DNA-binding protein compare
PP_2550 -1.2 -1.9 putative transcriptional regulatory protein compare
PP_4344 -1.2 -4.7 flagellar export pore protein compare
PP_1198 -1.2 -1.5 transcriptional regulator, Cro/CI family (higA antitoxin like) compare
PP_1097 -1.2 -1.2 Methionine--tRNA ligase compare
PP_1731 -1.1 -2.3 23S rRNA (746) and tRNA (32) pseudouridine synthase compare
PP_4227 -1.1 -1.3 conserved protein of unknown function compare
PP_4368 -1.1 -3.6 flagellar motor switch protein compare
PP_4131 -1.1 -1.6 NADH-quinone oxidoreductase subunit N compare
PP_4381 -1.1 -5.4 Flagellar hook-associated protein FlgK compare
PP_0848 -1.1 -1.5 donor of Fe2+ and regulator of cysteine desulfurase activity compare
PP_3019 -1.1 -2.5 Carbon-nitrogen hydrolase family protein compare
PP_3052 -1.1 -1.1 conserved protein of unknown function compare
PP_2360 -1.1 -2.4 putative type 1 pili subunit CsuA/B protein compare
PP_1926 -1.1 -1.5 putative phosphotyrosine-protein phosphatase compare
PP_4212 -1.1 -2.9 pyoverdine biosynthesis related protein compare
PP_5114 -1.1 -1.4 putative adenine methyltransferase compare
PP_4362 -1.1 -1.7 conserved protein of unknown function compare
PP_2378 -1.1 -1.1 Fe/S biogenesis protein NfuA compare
PP_5027 -1.1 -1.5 D-tyrosyl-tRNA(Tyr) deacylase compare
PP_4941 -1.1 -3.3 conserved exported protein of unknown function compare
PP_2074 -1.1 -1.9 Transcriptional regulator, LysR family compare
PP_2152 -1.1 -1.2 glycerophosphoryl diester phosphodiesterase compare
PP_4880 -1.1 -3.8 exoribonuclease R compare
PP_2939 -1.1 -2.0 toxin of the YefM-YoeB antitoxin/toxin complex and DNA-binding transcriptional repressor compare
PP_2370 -1.1 -1.4 conserved protein of unknown function compare


Specific Phenotypes

None in this experiment

For Pseudomonas putida KT2440 in soil experiments

For soil Soil=PNNL_Prosser_PlotA_B_20191220; Sterility=nonsterile; Collection=outgrowth_in_LB; SoilTreatment=none; SoilTreatmentTime=72_hrs across organisms