Experiment set24IT048 for Pseudomonas putida KT2440

Compare to:

Soil=PNNL_Prosser_PlotA_B_20191220; Sterility=nonsterile; Collection=outgrowth_in_LB; SoilTreatment=none; SoilTreatmentTime=72_hrs

200 most detrimental genes:

  gene name fitness t score description  
PP_1650 +4.0 24.0 Sensor protein GacS compare
PP_4099 +3.8 18.3 two-componenent system BarA/UvrY - regulatory subunit compare
PP_1656 +3.4 11.3 ATP:GTP 3'-pyrophosphotransferase compare
PP_1655 +2.6 5.5 23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD compare
PP_1237 +2.2 1.9 4-hydroxy-tetrahydrodipicolinate synthase compare
PP_0916 +1.6 3.5 Amino acid transporter LysE compare
PP_5008 +1.5 2.2 Poly granule-associated protein compare
PP_5528 +1.4 2.2 conserved protein of unknown function compare
PP_3241 +1.4 2.1 conserved exported protein of unknown function compare
PP_1190 +1.3 2.9 conserved protein of unknown function compare
PP_4171 +1.3 9.1 conserved exported protein of unknown function compare
PP_2070 +1.3 1.0 Transcriptional regulator, AraC family compare
PP_0958 +1.2 5.0 phospholipid ABC transporter ATP-binding subunit compare
PP_1000 +1.2 3.6 ornithine carbamoyltransferase, catabolic compare
PP_4799 +1.2 0.6 putative Muramoyltetrapeptide carboxypeptidase compare
PP_2847 +1.2 1.8 Urease accessory protein UreJ compare
PP_4999 +1.2 0.6 dihydroorotase-like protein compare
PP_2633 +1.2 1.5 conserved protein of unknown function compare
PP_2898 +1.2 2.5 conserved exported protein of unknown function compare
PP_2060 +1.2 1.3 DNA-binding transcriptional dual regulator - SoxR-reversible one-electron oxidation of its [2Fe-2S] cluster, NADPH-dependent compare
PP_4424 +1.2 1.6 Uncharacterized HTH-type transcriptional regulator y4tD compare
PP_2137 +1.1 3.3 beta-ketoadipyl CoA thiolase, beta component compare
PP_1269 +1.1 1.4 Universal stress protein family compare
PP_3411 +1.1 1.8 conserved protein of unknown function compare
PP_1783 +1.1 1.2 dTDP-glucose pyrophosphorylase compare
PP_2231 +1.1 1.6 putative permease of the drug/metabolite transporter (DMT) superfamily compare
PP_0856 +1.1 1.0 conserved lipoprotein of unknown function compare
PP_0166 +1.1 7.2 HlyD family secretion protein compare
PP_0168 +1.1 9.3 putative surface adhesion protein compare
PP_0063 +1.1 4.1 putative Lipid A biosynthesis lauroyl acyltransferase compare
PP_5017 +1.1 1.7 Sec-independent protein translocase protein TatB compare
PP_1381 +1.1 1.5 4-carboxymuconolactone decarboxylase compare
PP_4054 +1.0 1.8 conserved protein of unknown function compare
PP_5053 +1.0 6.0 Protein-export protein SecB compare
PP_1562 +1.0 2.1 putative Phage terminase, small subunit compare
PP_0167 +1.0 8.0 Toxin secretion ATP-binding protein compare
PP_4561 +1.0 1.2 stress response protein compare
PP_1020 +1.0 1.3 putative glucose-6-phosphate 1-epimerase compare
PP_0962 +1.0 1.9 toluene-tolerance protein compare
PP_4723 +1.0 0.7 Carbamoyl-phosphate synthase large chain compare
PP_5311 +1.0 5.6 putative signal transduction protein compare
PP_1663 +1.0 4.9 conserved exported protein of unknown function compare
PP_4504 +1.0 1.7 conserved exported protein of unknown function compare
PP_2306 +1.0 2.2 conserved exported protein of unknown function compare
PP_4519 +1.0 7.1 Agglutination protein compare
PP_3048 +1.0 2.4 conserved protein of unknown function compare
PP_2000 +0.9 0.9 amidophosphoribosyl transferase compare
PP_0874 +0.9 1.9 conserved protein of unknown function compare
PP_3831 +0.9 3.6 conserved protein of unknown function compare
PP_4268 +0.9 1.1 nucleoid-associated broad specificity regulator compare
PP_0165 +0.9 6.6 GGDEF domain protein compare
PP_4406 +0.9 1.8 conserved protein of unknown function compare
PP_2499 +0.9 0.8 conserved protein of unknown function compare
PP_4982 +0.9 2.6 putative cytochrome b561, iron-regulated compare
PP_1654 +0.9 0.6 cysteine synthase B compare
PP_5654 +0.9 2.2 putative phosphotriesterase compare
PP_2716 +0.9 2.4 arsenate reductase compare
PP_3117 +0.9 1.2 putative protein involved in error-prone processing of DNA lesions compare
PP_2005 +0.9 3.2 conserved exported protein of unknown function compare
PP_5471 +0.9 1.5 putative response regulator receiver protein compare
PP_0787 +0.9 1.5 quinolinate phosphoribosyltransferase (decarboxylating) monomer compare
PP_2681 +0.9 0.7 coenzyme PQQ synthesis protein D compare
PP_4704 +0.9 5.2 conserved protein of unknown function compare
PP_2330 +0.8 2.6 conserved protein of unknown function compare
PP_2163 +0.8 3.6 VacJ lipoprotein compare
PP_1574 +0.8 3.6 conserved protein of unknown function compare
PP_0719 +0.8 0.5 ribosome-associated potassium-dependent informational ATP/GTPase compare
PP_0319 +0.8 1.1 conserved protein of unknown function compare
PP_4217 +0.8 6.5 outer membrane ferripyoverdine receptor FpvA, TonB-dependent compare
PP_2794 +0.8 1.1 Oxidoreductase, short chain dehydrogenase/reductase family compare
PP_1353 +0.8 0.9 conserved membrane protein of unknown function compare
PP_0087 +0.8 2.3 conserved exported protein of unknown function compare
PP_0188 +0.8 3.1 putative Uroporphyrin-III C-methyltransferase compare
PP_5549 +0.8 2.3 conserved protein of unknown function compare
PP_0593 +0.8 0.9 putative ribosome-binding factor compare
PP_2960 +0.8 3.0 transcriptional regulator, AraC family compare
PP_0959 +0.8 1.3 phospholipid ABC transporter compare
PP_1380 +0.8 2.5 3-oxoadipate enol-lactonase 2 compare
PP_5201 +0.8 1.9 conserved protein of unknown function, UPF0149 family compare
PP_2640 +0.8 1.8 Acetyltransferase, GNAT family compare
PP_3003 +0.8 1.6 3-dehydroquinate dehydratase 3, type II compare
PP_4710 +0.8 4.1 tRNA pseudouridine 55 synthase compare
PP_2121 +0.8 1.0 putative Lipoprotein compare
PP_5572 +0.8 2.3 protein of unknown function compare
PP_2826 +0.8 2.3 Transcriptional regulator MexT compare
PP_1299 +0.8 3.4 putative amino acid ABC transporter - membrane subunit compare
PP_4874 +0.8 0.9 50S ribosomal protein L9 compare
PP_3392 +0.8 1.2 conserved protein of unknown function compare
PP_1004 +0.8 1.4 conserved protein of unknown function compare
PP_0672 +0.8 5.5 Sensory box protein compare
PP_4797 +0.7 1.2 conserved protein of unknown function compare
PP_0961 +0.7 3.0 toluene tolerance protein compare
PP_0893 +0.7 1.7 ThiJ/PfpI family protein compare
PP_0197 +0.7 2.1 conserved protein of unknown function compare
PP_4265 +0.7 0.7 DNA-binding transcriptional dual regulator compare
PP_1938 +0.7 1.9 conserved protein of unknown function compare
PP_2615 +0.7 1.7 hemolysin-coregulated protein compare
PP_0189 +0.7 3.0 putative heme biosynthesis protein compare
PP_2581 +0.7 0.8 conserved protein of unknown function compare
PP_5243 +0.7 1.6 putative hydrolase compare
PP_4100 +0.7 2.6 Transcriptional regulator, Cro/CI family compare
PP_4517 +0.7 1.3 conserved protein of unknown function compare
PP_2750 +0.7 1.5 putative Branched-chain amino acid ABC transporter, permease protein compare
PP_3863 +0.7 3.0 putative Phage tail protein compare
PP_4805 +0.7 3.9 membrane-bound lytic murein transglycosylase B compare
PP_1051 +0.7 1.7 Type II secretion pathway protein XcpV compare
PP_3185 +0.7 1.5 Pet18 protein compare
PP_2067 +0.7 2.0 putative EmrB/QacA family drug resistance transporter compare
PP_3483 +0.7 2.5 putative Type II secretion system protein compare
PP_3460 +0.7 1.1 quinohemoprotein amine dehydrogenase, gamma subunit compare
PP_5331 +0.7 1.4 Long-chain acyl-CoA thioester hydrolase compare
PP_4180 +0.7 1.7 conserved protein of unknown function compare
PP_3398 +0.7 1.1 putative Curli fiber surface-exposed nucleator CsgB compare
PP_4126 +0.7 0.8 NADH-quinone oxidoreductase subunit I compare
PP_1918 +0.7 4.4 septation protein compare
PP_4246 +0.7 3.4 Periplasmic binding protein compare
PP_5690 +0.7 2.5 conserved protein of unknown function compare
PP_4254 +0.7 1.1 conserved protein of unknown function compare
PP_2304 +0.7 3.2 putative Peptidyl-prolyl cis-trans isomerase D compare
PP_3778 +0.7 3.0 Pyrroline-5-carboxylate reductase compare
PP_5552 +0.7 1.7 conserved protein of unknown function compare
PP_5365 +0.7 3.9 putative fatty acid methyltransferase compare
PP_3938 +0.7 1.3 conserved protein of unknown function compare
PP_2531 +0.7 2.8 putative 5-nucleotidase compare
PP_4724 +0.7 0.5 Carbamoyl-phosphate synthase small chain compare
PP_2684 +0.7 1.6 conserved membrane protein of unknown function compare
PP_5623 +0.7 2.2 conserved membrane protein of unknown function compare
PP_0794 +0.7 1.6 1-phosphofructokinase monomer compare
PP_0703 +0.7 1.3 putative Transmembrane sensor compare
PP_4280 +0.7 2.1 xanthine dehydrogenase accessory factor compare
PP_3407 +0.7 1.1 conserved protein of unknown function compare
PP_0653 +0.7 1.0 conserved protein of unknown function compare
PP_3919 +0.7 1.0 conserved protein of unknown function compare
PP_0412 +0.7 2.8 Polyamine ABC transporter, periplasmic polyamine-binding protein compare
PP_0855 +0.7 1.0 conserved protein of unknown function compare
PP_2889 +0.7 3.1 putative Transmembrane regulator PrtR compare
PP_5603 +0.6 2.1 putative FAD dependent oxidoreductase compare
PP_4760 +0.6 1.0 Alcohol dehydrogenase, zinc-containing compare
PP_5322 +0.6 2.9 putative metal ion transporter compare
PP_1501 +0.6 2.0 conserved protein of unknown function compare
PP_2081 +0.6 2.4 putative phosphoenolpyruvate synthase regulatory protein compare
PP_0414 +0.6 2.6 Polyamine ABC transporter, permease protein compare
PP_5670 +0.6 2.3 conserved protein of unknown function compare
PP_5558 +0.6 1.8 putative transcriptional xre family of phage origin compare
PP_0550 +0.6 1.8 conserved protein of unknown function compare
PP_5110 +0.6 1.5 cytokinetic ring ABC transporter-like subunit - ATP-binding subunit compare
PP_2756 +0.6 1.3 conserved protein of unknown function compare
PP_5535 +0.6 2.3 conserved membrane protein of unknown function compare
PP_3792 +0.6 1.0 conserved protein of unknown function compare
PP_3943 +0.6 2.9 N-formylmaleamate deformylase compare
PP_1855 +0.6 2.2 conserved exported protein of unknown function compare
PP_5SB +0.6 1.6 5S ribosomal RNA compare
PP_2127 +0.6 1.7 Sensor histidine kinase compare
PP_0303 +0.6 1.8 dehydrocarnitine cleavage enzyme compare
PP_1045 +0.6 1.2 Type II secretion pathway protein XcpP compare
PP_4136 +0.6 0.9 Transcriptional regulator, LuxR family compare
PP_5066 +0.6 1.5 K(+)/H(+) antiporter NhaP2 compare
PP_1691 +0.6 1.3 conserved protein of unknown function compare
PP_5241 +0.6 1.6 DNA-binding response regulator, LuxR family compare
PP_4133 +0.6 0.8 Transcriptional regulator-related protein compare
PP_2342 +0.6 1.9 conserved protein of unknown function compare
PP_0339 +0.6 0.4 Pyruvate dehydrogenase E1 component compare
PP_3971 +0.6 1.0 conserved protein of unknown function compare
PP_0957 +0.6 1.3 D-arabinose 5-phosphate isomerase compare
PP_3055 +0.6 1.7 Pyocin R2_PP, tail formation protein compare
PP_1210 +0.6 1.7 DNA-binding stress protein compare
PP_2500 +0.6 1.6 conserved protein of unknown function compare
PP_5491 +0.6 1.4 conserved protein of unknown function with SEC-C motif domain compare
PP_0900 +0.6 1.8 PAP2 family protein compare
PP_3175 +0.6 2.6 putative Dioxygenase, ferredoxin reductase component compare
PP_3035 +0.6 1.2 conserved protein of unknown function compare
PP_0275 +0.6 1.9 conserved protein of unknown function compare
PP_0617 +0.6 3.1 Branched-chain amino acid ABC transporter, permease protein compare
PP_0360 +0.6 2.2 Molybdate transport regulator compare
PP_0064 +0.6 1.3 conserved protein of unknown function compare
PP_4497 +0.6 2.3 conserved protein of unknown function compare
PP_2226 +0.6 2.1 putative K(+)/H(+) antiporter subunit F compare
PP_5724 +0.6 1.9 conserved protein of unknown function compare
PP_2972 +0.6 1.2 conserved protein of unknown function compare
PP_0708 +0.6 3.0 putative Betaine-aldehyde dehydrogenase compare
PP_3121 +0.6 1.8 transcriptional regulator, LysR family compare
PP_3444 +0.6 1.8 Glyoxalase family protein compare
PP_4974 +0.6 2.6 NhaP-type Na+/H+ and K+/H+ antiporters compare
PP_4461 +0.6 3.1 Major facilitator family transporter compare
PP_2729 +0.6 2.3 conserved protein of unknown function compare
PP_3363 +0.6 1.2 putative thymidylate kinase compare
PP_0679 +0.6 2.0 conserved exported protein of unknown function compare
PP_4832 +0.6 1.2 Precorrin-6x reductase compare
PP_1124 +0.6 1.0 conserved membrane protein of unknown function compare
PP_1664 +0.6 0.7 phosphoribosylglycinamide formyltransferase 1 compare
PP_3505 +0.6 0.9 conserved protein of unknown function compare
PP_2416 +0.6 1.1 putative Iron ABC transporter, ATP-binding protein compare
PP_0130 +0.6 3.2 1,6-anhydro-N-acetylmuramyl-L-alanine amidase compare
PP_0642 +0.6 1.1 conserved membrane protein of unknown function compare
PP_5160 +0.6 2.1 conserved exported protein of unknown function compare
PP_3678 +0.6 2.7 conserved protein of unknown function compare
PP_1699 +0.5 1.6 2-pyrone-4,6-dicarboxylic acid hydrolase compare
PP_4818 +0.5 1.2 ribosomal protein L11 methyltransferase compare
PP_2877 +0.5 2.1 putative osmotic pressure-regulated transporter compare
PP_5358 +0.5 2.2 conserved protein of unknown function compare


Specific Phenotypes

None in this experiment

For Pseudomonas putida KT2440 in soil experiments

For soil Soil=PNNL_Prosser_PlotA_B_20191220; Sterility=nonsterile; Collection=outgrowth_in_LB; SoilTreatment=none; SoilTreatmentTime=72_hrs across organisms