Experiment set24IT047 for Pseudomonas putida KT2440

Compare to:

Soil=PNNL_Prosser_PlotA_B_20191220; Sterility=nonsterile; Collection=outgrowth_in_LB; SoilTreatment=none; SoilTreatmentTime=72_hrs

200 most important genes:

  gene name fitness t score description  
PP_0164 -6.0 -5.8 conserved protein of unknown function compare
PP_1623 -5.0 -6.9 RNA polymerase, sigma S (sigma 38) factor compare
PP_4058 -3.8 -13.5 1,4-alpha-glucan branching enzyme compare
PP_1734 -3.7 -5.6 Probable septum site-determining protein MinC compare
PP_4994 -3.5 -6.8 conserved protein of unknown function compare
PP_0846 -3.4 -2.3 DnaK-like molecular chaperone specific for IscU compare
PP_4396 -3.2 -6.2 conserved protein of unknown function compare
PP_4004 -3.1 -7.0 DNA translocase FtsK compare
PP_1898 -3.0 -3.4 MotA/TolQ/ExbB proton channel family protein compare
PP_1428 -2.8 -1.9 Sigma factor AlgU negative regulatory protein compare
PP_4910 -2.8 -5.1 conserved protein of unknown function compare
PP_0184 -2.8 -5.8 Argininosuccinate lyase compare
PP_4383 -2.6 -7.0 Flagellar P-ring protein compare
PP_1778 -2.5 -8.7 Lipopolysaccharide ABC export system, permease protein compare
PP_5328 -2.5 -2.9 putative phosphate transport system permease protein compare
PP_4375 -2.5 -9.7 flagellar chaperone, inhibits premature FliC assembly compare
PP_0406 -2.5 -3.3 Nucleotidyltransferase family protein compare
PP_1198 -2.4 -3.2 transcriptional regulator, Cro/CI family (higA antitoxin like) compare
PP_4380 -2.4 -13.4 Flagellar hook-associated protein FlgL compare
PP_4342 -2.3 -3.9 flagellar synthesis regulator, putative ATPase compare
PP_4354 -2.3 -5.6 flagellar export apparatus subunit compare
PP_4964 -2.3 -3.5 D-erythrose 4-phosphate dehydrogenase compare
PP_1215 -2.3 -2.6 Crossover junction endodeoxyribonuclease RuvC compare
PP_4726 -2.3 -3.9 Chaperone protein DnaJ compare
PP_4120 -2.3 -2.7 NADH-quinone oxidoreductase subunit B compare
PP_1779 -2.3 -6.2 Lipopolysaccharide ABC export system, ATP-binding protein compare
PP_5095 -2.3 -1.5 pyrroline-5-carboxylate reductase compare
PP_4376 -2.3 -11.8 flagellar filament capping protein compare
PP_4337 -2.3 -8.9 chemotaxis response regulator protein-glutamate methylesterase of group 1 operon compare
PP_0949 -2.3 -6.2 putative ATP-binding protein UPF0042 compare
PP_4361 -2.2 -8.4 Flagellar hook-length control protein FliK compare
PP_4391 -2.2 -10.8 flagellar basal-body rod protein FlgB compare
PP_4356 -2.2 -5.6 Flagellar protein FliO compare
PP_1088 -2.2 -9.5 Argininosuccinate synthase compare
PP_4355 -2.2 -2.1 flagellar export apparatus subunit compare
PP_2378 -2.2 -2.5 Fe/S biogenesis protein NfuA compare
PP_4378 -2.1 -14.2 flagellin, filament structural protein compare
PP_4388 -2.1 -14.2 Flagellar hook protein FlgE compare
PP_4366 -2.1 -13.7 flagellum-specific ATP synthase compare
PP_4344 -2.1 -11.7 flagellar export pore protein compare
PP_4370 -2.1 -5.1 Flagellar hook-basal body complex protein FliE compare
PP_5289 -2.1 -4.3 Acetylglutamate kinase compare
PP_1733 -2.1 -3.3 membrane ATPase of the MinC-MinD-MinE system compare
PP_4008 -2.1 -8.3 ATP-dependent serine protease compare
PP_4909 -2.0 -6.6 phosphoserine phosphatase compare
PP_1217 -2.0 -5.5 Holliday junction ATP-dependent DNA helicase RuvB compare
PP_4804 -2.0 -1.9 RlpA-like lipoprotein compare
PP_4369 -2.0 -8.2 Flagellar M-ring protein compare
PP_4381 -2.0 -12.4 Flagellar hook-associated protein FlgK compare
PP_4367 -2.0 -4.9 Flagellar assembly protein FliH compare
PP_4365 -1.9 -5.8 Flagellar protein FliJ compare
PP_4389 -1.9 -7.6 Flagellar basal-body rod modification protein FlgD compare
PP_4390 -1.9 -10.3 flagellar basal-body rod protein FlgC compare
PP_4382 -1.9 -11.4 Peptidoglycan hydrolase FlgJ compare
PP_4341 -1.9 -7.1 RNA polymerase sigma 28 (sigma F) factor for class III flagellar operons compare
PP_4368 -1.9 -5.4 flagellar motor switch protein compare
PP_4343 -1.8 -7.2 Flagellar biosynthesis protein FlhF compare
PP_4384 -1.8 -9.2 Flagellar L-ring protein compare
PP_4353 -1.8 -8.0 Flagellar biosynthetic protein fliR compare
PP_4358 -1.8 -7.8 flagellar synthesis, switching and energizing component compare
PP_4352 -1.8 -8.6 flagellin export apparatus, substrate specificity protein compare
PP_4386 -1.8 -3.6 flagellar basal-body rod protein FlgF compare
PP_5185 -1.8 -5.5 acetylglutamate kinase-like protein (regulatory domain)/amino acid N-acetyltransferase compare
PP_5327 -1.8 -3.5 putative phosphate ABC transporter, permease subunit compare
PP_2145 -1.8 -3.7 beta-N-acetylglucosaminidase compare
PP_3484 -1.7 -3.7 Response regulator receiver protein compare
PP_4394 -1.7 -6.4 flagella basal body P-ring formation protein compare
PP_4268 -1.7 -1.6 nucleoid-associated broad specificity regulator compare
PP_1293 -1.7 -2.3 molybdopterin synthase small subunit compare
PP_3649 -1.7 -5.3 Transcriptional regulator, GntR family compare
PP_0547 -1.7 -5.1 UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl- meso-diaminopimelate ligase compare
PP_4943 -1.6 -2.4 putative Glycosyl transferase compare
PP_0789 -1.6 -4.8 N-acetyl-anhydromuramyl-L-alanine-amidase compare
PP_1493 -1.6 -4.1 chemotaxis response regulator protein-glutamate methylesterase of group 3 operon compare
PP_4131 -1.6 -4.2 NADH-quinone oxidoreductase subunit N compare
PP_5217 -1.6 -11.5 Polyphosphate kinase compare
PP_4385 -1.6 -7.2 flagellar basal-body rod protein FlgG compare
PP_4124 -1.6 -3.4 NADH-quinone oxidoreductase subunit G compare
PP_2302 -1.5 -5.1 DNA-binding, ATP-dependent protease compare
PP_5084 -1.5 -7.6 penicillin-insensitive transglycosylase/penicillin-sensitive transpeptidase compare
PP_4340 -1.5 -4.8 response regulator for chemotactic signal transduction compare
PP_2433 -1.5 -2.5 conserved protein of unknown function compare
PP_5338 -1.5 -3.6 aspartate ammonia-lyase compare
PP_4793 -1.5 -3.3 conserved protein of unknown function compare
PP_0434 -1.5 -3.7 Anhydro-N-acetylmuramic acid kinase compare
PP_4904 -1.5 -8.0 Flagellar motor rotation protein compare
PP_1036 -1.5 -7.3 membrane-bound lytic murein transglycosylase F compare
PP_4126 -1.5 -1.4 NADH-quinone oxidoreductase subunit I compare
PP_4942 -1.5 -2.9 conserved protein of unknown function compare
PP_4332 -1.5 -4.8 Chemotaxis protein CheW compare
PP_4122 -1.5 -1.5 proton-pumping NADH:ubiquinone oxidoreductase, respiratory complex I, subunit E compare
PP_5230 -1.4 -3.6 Tyrosine recombinase XerC compare
PP_0435 -1.4 -6.3 Peptidase, M23/M37 family compare
PP_4471 -1.4 -5.4 Magnesium transporter compare
PP_4905 -1.4 -6.3 Flagellar motor rotation protein compare
PP_0123 -1.4 -7.3 DNA polymerase I, 5 compare
PP_1764 -1.4 -2.9 Phosphoglycolate phosphatase 2 compare
PP_4359 -1.4 -5.1 Flagellar protein FliL compare
PP_4803 -1.4 -7.8 D-alanyl-D-alanine carboxypeptidase compare
PP_3999 -1.4 -6.1 Uroporphyrinogen-III C-methyltransferase/Precorrin-2 dehydrogenase/Sirohydrochlorin ferrochelatase compare
PP_2031 -1.3 -3.5 conserved protein of unknown function compare
PP_4880 -1.3 -7.3 exoribonuclease R compare
PP_0405 -1.3 -6.5 conserved protein of unknown function compare
PP_1763 -1.3 -3.1 putative oxidoreductase compare
PP_1224 -1.3 -5.0 periplasmic subunit of the TolQRA transport system compare
PP_4941 -1.3 -5.8 conserved exported protein of unknown function compare
PP_5051 -1.3 -3.2 conserved protein of unknown function compare
PP_4936 -1.3 -6.5 O-antigen polymerase compare
PP_0758 -1.3 -5.2 conserved protein of unknown function compare
PP_4067 -1.3 -5.8 methylcrotonyl-CoA carboxylase biotin-containing subunit alpha compare
PP_1906 -1.2 -4.1 ribosomal large subunit pseudouridine synthase C compare
PP_1355 -1.2 -7.3 Muropeptide permease AmpG compare
PP_4892 -1.2 -4.9 integral membrane ATP-dependent zinc metallopeptidase / HflK-HflC complex compare
PP_5045 -1.2 -4.0 tRNA sulfurtransferase compare
PP_2370 -1.2 -2.5 conserved protein of unknown function compare
PP_5310 -1.2 -4.5 junction-specific ATP-dependent DNA helicase compare
PP_4902 -1.2 -2.6 Oligoribonuclease compare
PP_5145 -1.2 -10.2 phosphoenolpyruvate-dependent regulator (with NPR and NTR proteins) compare
PP_1062 -1.2 -3.3 MutT/nudix family protein compare
PP_0117 -1.2 -4.6 Zn(2+) ABC transporter - permease subunit compare
PP_0513 -1.1 -3.0 DNA-binding transcriptional repressor NrdR-Zn2+-ATP/dATP compare
PP_4130 -1.1 -3.2 NADH:ubiquinone oxidoreductase, membrane subunit M compare
PP_1598 -1.1 -3.0 regulatory intramembrane protein RIP zinc protease compare
PP_1318 -1.1 -4.5 Cytochrome b compare
PP_2028 -1.1 -3.7 conserved protein of unknown function containing tetratricopeptide (TPR) domain repeat compare
PP_5155 -1.1 -4.6 D-3-phosphoglycerate dehydrogenase / alpha-ketoglutarate reductase compare
PP_1328 -1.1 -2.5 Protein MraZ compare
PP_0888 -1.1 -1.6 Photosynthetic apparatus regulatory protein RegA compare
PP_2336 -1.1 -1.4 aconitate hydratase 1 compare
PP_4891 -1.1 -3.5 integral membrane ATP-dependent zinc metallopeptidase / HflK-HflC complex compare
PP_4335 -1.1 -5.9 flagellar motor protein compare
PP_2027 -1.1 -4.3 conserved exported protein of unknown function compare
PP_5350 -1.1 -2.9 Transcriptional regulator, RpiR family compare
PP_1319 -1.1 -3.5 Ubiquinol--cytochrome c reductase, cytochrome c1 compare
PP_4700 -1.1 -1.4 pantothenate synthetase compare
PP_5090 -1.1 -1.6 putative cell division protein compare
PP_0292 -1.0 -2.4 1-(5-phosphoribosyl)-5-((5-phosphoribosylamino)methylideneamino)imidazole-4-carboxamide isomerase (EC 5.3.1.16) (from data) compare
PP_2903 -1.0 -2.3 peptidyl-prolyl cis-trans isomerase B (rotamase B) compare
PP_4532 -1.0 -2.3 ATP-dependent DEAD-box RNA helicase require for 50S ribosomal subunit biogenesis compare
PP_3519 -1.0 -1.1 putative Lipoprotein compare
PP_0395 -1.0 -7.0 putative type IV piliation protein compare
PP_4261 -1.0 -3.7 cation-transporting P-type ATPase compare
PP_1325 -1.0 -4.4 putative lipoprotein compare
PP_0951 -1.0 -5.2 Ribosome hibernation promoting factor compare
PP_5502 -1.0 -3.3 ribosome modulation factor compare
PP_1268 -1.0 -1.7 putative HtrA suppressor protein sohA compare
PP_4993 -1.0 -3.3 Glutathione synthetase compare
PP_2088 -1.0 -1.6 RNA polymerase sigma factor SigX compare
PP_3821 -1.0 -5.8 UTP-glucose-1-phosphate uridylyltransferase compare
PP_4546 -1.0 -2.7 ATP-dependent helicase HrpA compare
PP_3902 -1.0 -2.8 conserved protein of unknown function compare
PP_1994 -1.0 -1.5 tRNA pseudouridine (38-40)synthase compare
PP_3596 -1.0 -3.9 D-lysine oxidase compare
PP_4338 -1.0 -4.8 Chemotaxis histidine kinase CheA compare
PP_1979 -1.0 -2.4 putative Hydrolase compare
PP_2215 -1.0 -3.7 acetyl-CoA acetyltransferase compare
PP_4334 -1.0 -5.4 ParA family protein compare
PP_4917 -1.0 -3.2 3',5'-cyclic-nucleotide phosphodiesterase compare
PP_4129 -0.9 -2.2 NADH:ubiquinone oxidoreductase, membrane subunit L compare
PP_5114 -0.9 -2.1 putative adenine methyltransferase compare
PP_4333 -0.9 -5.4 CheW domain protein compare
PP_1713 -0.9 -1.9 Transcriptional regulator PcaQ compare
PP_0397 -0.9 -6.9 protein kinase compare
PP_4121 -0.9 -2.5 NADH-quinone oxidoreductase subunit C/D compare
PP_0083 -0.9 -4.3 tryptophan synthase beta chain compare
PP_4159 -0.9 -3.0 Potassium-transporting ATPase C chain compare
PP_1366 -0.9 -1.2 Transcriptional regulator MvaT, P16 subunit compare
PP_0218 -0.9 -5.4 Sensory box protein compare
PP_1468 -0.9 -1.9 Tyrosine recombinase XerD compare
PP_4620 -0.9 -4.8 Fumarylacetoacetase compare
PP_1087 -0.9 -4.9 Outer membrane protein, OmpA family compare
PP_4296 -0.9 -1.8 conserved exported protein of unknown function compare
PP_2371 -0.9 -3.3 Sulphite reductase hemoprotein, beta subunit compare
PP_5337 -0.9 -3.4 LysR family transcriptional regulator compare
PP_0393 -0.9 -1.0 putative 2-amino-4-hydroxy-6-hydroxymethyldihydropteridine pyrophosphokinase compare
PP_3924 -0.9 -2.2 conserved protein of unknown function compare
PP_1079 -0.9 -3.7 Ornithine carbamoyltransferase compare
PP_4944 -0.9 -2.5 Carbamoyltransferase compare
PP_0396 -0.9 -6.4 conserved protein of unknown function compare
PP_1731 -0.9 -3.4 23S rRNA (746) and tRNA (32) pseudouridine synthase compare
PP_1528 -0.9 -0.9 conserved protein of unknown function compare
PP_2402 -0.9 -1.5 putative Sensor histidine kinase compare
PP_4065 -0.9 -5.0 methylcrotonyl-CoA carboxylase biotin-containing subunit beta compare
PP_0022 -0.9 -1.1 hypothetical protein compare
PP_2214 -0.8 -1.8 3-hydroxyacyl-CoA dehydrogenase type-2 compare
PP_1001 -0.8 -2.0 arginine deiminase compare
PP_4253 -0.8 -2.3 cytochrome c oxidase subunit, cbb3-type compare
PP_0735 -0.8 -1.8 molybdopterin-synthase adenylyltransferase compare
PP_4940 -0.8 -5.9 Putative glycosyltransferase compare
PP_4263 -0.8 -2.5 putative membrane-bounded cytochrome biogenesis cycZ-like domain, copper tolerance protein compare
PP_5001 -0.8 -2.8 protease HslVU, ATPase component compare
PP_3073 -0.8 -3.1 3-hydroxybutyrate dehydrogenase compare
PP_4981 -0.8 -1.6 polyisoprene-binding protein, acidic stress response factor compare
PP_0126 -0.8 -2.7 Cytochrome c4 compare
PP_0119 -0.8 -2.7 putative zinc uptake regulation protein ZUR compare
PP_5279 -0.8 -1.9 conserved protein of unknown function compare
PP_0401 -0.8 -2.5 Ribosomal RNA small subunit methyltransferase A compare
PP_4938 -0.8 -4.8 putative Glycosyl transferase compare
PP_1836 -0.8 -2.8 putative metal transporter, ZIP family compare
PP_0963 -0.8 -2.7 putative BolA family protein compare


Specific Phenotypes

None in this experiment

For Pseudomonas putida KT2440 in soil experiments

For soil Soil=PNNL_Prosser_PlotA_B_20191220; Sterility=nonsterile; Collection=outgrowth_in_LB; SoilTreatment=none; SoilTreatmentTime=72_hrs across organisms