Experiment set24IT047 for Pseudomonas putida KT2440

Compare to:

Soil=PNNL_Prosser_PlotA_B_20191220; Sterility=nonsterile; Collection=outgrowth_in_LB; SoilTreatment=none; SoilTreatmentTime=72_hrs

200 most detrimental genes:

  gene name fitness t score description  
PP_1656 +3.1 9.8 ATP:GTP 3'-pyrophosphotransferase compare
PP_1650 +3.0 25.9 Sensor protein GacS compare
PP_4099 +2.9 19.3 two-componenent system BarA/UvrY - regulatory subunit compare
PP_1655 +2.4 6.2 23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD compare
PP_1237 +1.6 2.2 4-hydroxy-tetrahydrodipicolinate synthase compare
PP_4171 +1.3 10.2 conserved exported protein of unknown function compare
PP_1663 +1.0 6.3 conserved exported protein of unknown function compare
PP_5571 +1.0 2.0 conserved protein of unknown function compare
PP_3398 +0.9 2.8 putative Curli fiber surface-exposed nucleator CsgB compare
PP_0958 +0.9 4.4 phospholipid ABC transporter ATP-binding subunit compare
PP_4196 +0.9 1.9 conserved exported protein of unknown function compare
PP_0960 +0.9 4.6 phospholipid ABC transporter binding protein compare
PP_1824 +0.9 1.6 Smr domain protein compare
PP_5473 +0.9 1.6 putative transcriptional regulator, LuxR family compare
PP_4797 +0.9 1.6 conserved protein of unknown function compare
PP_1568 +0.8 1.6 conserved protein of unknown function compare
PP_0938 +0.8 5.1 conserved protein of unknown function compare
PP_3840 +0.8 1.7 conserved protein of unknown function compare
PP_4561 +0.8 1.3 stress response protein compare
PP_0566 +0.8 1.6 translation-related factor compare
PP_2747 +0.8 0.9 conserved protein of unknown function compare
PP_5053 +0.8 4.0 Protein-export protein SecB compare
PP_0874 +0.7 1.1 conserved protein of unknown function compare
PP_4246 +0.7 4.8 Periplasmic binding protein compare
PP_2121 +0.7 1.8 putative Lipoprotein compare
PP_1774 +0.7 1.4 conserved exported protein of unknown function compare
PP_5674 +0.7 2.8 conserved protein of unknown function compare
PP_0961 +0.7 4.7 toluene tolerance protein compare
PP_0999 +0.7 1.6 carbamate kinase compare
PP_0001 +0.7 1.7 probable chromosome-partitioning protein compare
PP_1562 +0.7 1.6 putative Phage terminase, small subunit compare
PP_2388 +0.7 2.2 Transporter, LysE family compare
PP_1654 +0.7 0.9 cysteine synthase B compare
PP_3034 +0.7 2.2 putative Regulator protein compare
PP_2499 +0.7 0.8 conserved protein of unknown function compare
PP_4814 +0.7 1.8 ATP-dependent protease La domain protein compare
PP_4217 +0.7 6.3 outer membrane ferripyoverdine receptor FpvA, TonB-dependent compare
PP_1508 +0.7 2.7 conserved protein of unknown function compare
PP_2970 +0.7 2.2 conserved exported protein of unknown function compare
PP_4054 +0.7 2.6 conserved protein of unknown function compare
PP_0195 +0.7 1.3 conserved protein of unknown function compare
PP_5008 +0.7 0.9 Poly granule-associated protein compare
PP_1269 +0.6 1.0 Universal stress protein family compare
PP_1124 +0.6 1.9 conserved membrane protein of unknown function compare
PP_4317 +0.6 1.8 conserved protein of unknown function compare
PP_4817 +0.6 2.0 MaoC domain protein compare
PP_1390 +0.6 2.7 conserved exported protein of unknown function compare
PP_3589 +0.6 3.1 serine:H+ symport permease, threonine-insensitive compare
PP_1903 +0.6 2.9 putative phosphotyrosine-protein phosphatase compare
PP_2304 +0.6 3.8 putative Peptidyl-prolyl cis-trans isomerase D compare
PP_4173 +0.6 4.0 Sensor histidine kinase/response regulator compare
PP_5453 +0.6 1.1 conserved protein of unknown function compare
PP_1113 +0.6 4.4 Pyridoxal-phosphate dependent enzyme family protein compare
PP_2581 +0.6 1.4 conserved protein of unknown function compare
PP_3951 +0.6 2.9 3-oxoadipate CoA-transferase subunit A compare
PP_5552 +0.6 1.6 conserved protein of unknown function compare
PP_2740 +0.6 2.0 Transcriptional regulator, MerR family compare
PP_2163 +0.6 3.4 VacJ lipoprotein compare
PP_0856 +0.6 0.7 conserved lipoprotein of unknown function compare
PP_1918 +0.6 4.4 septation protein compare
PP_1752 +0.6 3.6 conserved protein of unknown function compare
PP_4254 +0.6 0.9 conserved protein of unknown function compare
PP_0959 +0.6 1.3 phospholipid ABC transporter compare
PP_1153 +0.6 1.4 putative lipoprotein compare
PP_4133 +0.5 1.4 Transcriptional regulator-related protein compare
PP_0685 +0.5 1.5 conserved protein of unknown function compare
PP_3320 +0.5 2.1 conserved protein of unknown function compare
PP_1045 +0.5 0.9 Type II secretion pathway protein XcpP compare
PP_2680 +0.5 3.0 aldehyde dehydrogenase compare
PP_3328 +0.5 1.0 putative Ring-cleaving dioxygenase compare
PP_5311 +0.5 3.5 putative signal transduction protein compare
PP_5619 +0.5 1.3 protein of unknown function compare
PP_0848 +0.5 1.1 donor of Fe2+ and regulator of cysteine desulfurase activity compare
PP_2087 +0.5 1.4 CmpX protein compare
PP_4999 +0.5 0.3 dihydroorotase-like protein compare
PP_1176 +0.5 1.1 conserved protein of unknown function compare
PP_1122 +0.5 1.6 OmpA family protein compare
PP_4799 +0.5 0.3 putative Muramoyltetrapeptide carboxypeptidase compare
PP_2306 +0.5 1.4 conserved exported protein of unknown function compare
PP_2718 +0.5 1.9 arsenic resistance transcriptional regulator compare
PP_0048 +0.5 1.1 conserved protein of unknown function compare
PP_2748 +0.5 1.2 putative Branched-chain amino acid ABC transporter, ATP-binding protein compare
PP_1111 +0.5 2.3 putative Synthetase compare
PP_2309 +0.5 0.9 conserved protein of unknown function compare
PP_4660 +0.5 1.5 Transcriptional regulator, LysR family compare
PP_2386 +0.5 3.0 conserved protein of unknown function compare
PP_3110 +0.5 0.8 protein of unknown function compare
PP_1999 +0.5 0.8 membrane protein required for colicin V production compare
PP_3098 +0.5 0.8 conserved protein of unknown function compare
PP_4874 +0.5 0.5 50S ribosomal protein L9 compare
PP_2462 +0.5 1.0 conserved protein of unknown function compare
PP_0210 +0.5 2.6 putative Phycobiliprotein compare
PP_2054 +0.5 1.5 putative DNA-binding transcriptional regulator compare
PP_0939 +0.5 1.8 Carbon-nitrogen hydrolase family protein compare
PP_3676 +0.5 2.8 conserved protein of unknown function compare
PP_2540 +0.5 1.3 Oxidoreductase, short-chain dehydrogenase/reductase family compare
PP_1112 +0.5 3.2 conserved membrane protein of unknown function compare
PP_3419 +0.5 2.5 Sigma-54 dependent transcriptional regulator/response regulator compare
PP_2060 +0.5 1.0 DNA-binding transcriptional dual regulator - SoxR-reversible one-electron oxidation of its [2Fe-2S] cluster, NADPH-dependent compare
PP_0794 +0.5 1.7 1-phosphofructokinase monomer compare
PP_0962 +0.5 2.2 toluene-tolerance protein compare
PP_5471 +0.5 1.1 putative response regulator receiver protein compare
PP_0900 +0.5 2.0 PAP2 family protein compare
PP_1371 +0.5 2.6 Methyl-accepting chemotaxis protein PctA compare
PP_5586 +0.5 1.8 exported protein of unknown function compare
PP_2976 +0.5 1.1 putative transposase compare
PP_4681 +0.5 1.7 conserved protein of unknown function compare
PP_2323 +0.5 3.5 conserved protein of unknown function compare
PP_0607 +0.5 1.9 putative Type IV pili biogenesis protein FimT compare
PP_4959 +0.5 3.7 diguanylate cyclase compare
PP_1190 +0.5 1.8 conserved protein of unknown function compare
PP_0063 +0.5 2.1 putative Lipid A biosynthesis lauroyl acyltransferase compare
PP_0947 +0.5 2.4 conserved membrane protein of unknown function compare
PP_5191 +0.5 1.4 conserved exported protein of unknown function compare
PP_0188 +0.5 2.0 putative Uroporphyrin-III C-methyltransferase compare
PP_2793 +0.5 1.6 Acyl-CoA dehydrogenase family protein compare
PP_1912 +0.5 2.2 Phosphate acyltransferase compare
PP_1204 +0.5 2.3 putative Lipoprotein compare
PP_5717 +0.5 1.4 conserved protein of unknown function compare
PP_5248 +0.5 1.1 putative hydrolase compare
PP_4100 +0.5 2.0 Transcriptional regulator, Cro/CI family compare
PP_5528 +0.5 0.9 conserved protein of unknown function compare
PP_3637 +0.5 1.1 putative Sulfonate ABC transporter, ATP-binding protein compare
PP_1876 +0.5 1.5 putative ATP/GTP-binding protein of the AAA+ family compare
PP_3831 +0.5 2.1 conserved protein of unknown function compare
PP_1110 +0.4 1.6 serine acetyltransferase compare
PP_1649 +0.4 1.7 D-lactate dehydrogenase compare
PP_1109 +0.4 3.8 Transcriptional regulator, GntR family compare
PP_2828 +0.4 2.4 conserved protein of unknown function compare
PP_4306 +0.4 2.5 conserved protein of unknown function compare
PP_0319 +0.4 1.2 conserved protein of unknown function compare
PP_4835 +0.4 1.5 conserved exported protein of unknown function compare
PP_2005 +0.4 2.0 conserved exported protein of unknown function compare
PP_3040 +0.4 1.8 Pyocin R2_PP, holin compare
PP_0640 +0.4 0.8 conserved protein of unknown function compare
PP_4480 +0.4 2.4 arginine N-succinyltransferase, subunit alpha compare
PP_3647 +0.4 1.5 putative Oxidoreductase compare
PP_4704 +0.4 3.4 conserved protein of unknown function compare
PP_0189 +0.4 2.7 putative heme biosynthesis protein compare
PP_2330 +0.4 1.7 conserved protein of unknown function compare
PP_1895 +0.4 1.6 putative ABC transporter - ATP binding subunit compare
PP_4199 +0.4 0.7 putative Lipoprotein compare
PP_3810 +0.4 1.3 conserved protein of unknown function compare
PP_5457 +0.4 2.1 conserved protein of unknown function compare
PP_2615 +0.4 1.5 hemolysin-coregulated protein compare
PP_5609 +0.4 2.0 conserved protein of unknown function compare
PP_0674 +0.4 3.1 ADP/ATP ratio sensor and inhibitor of translation compare
PP_1800 +0.4 2.9 Oxidoreductase Rmd compare
PP_1381 +0.4 0.7 4-carboxymuconolactone decarboxylase compare
PP_5520 +0.4 1.7 conserved protein of unknown function compare
PP_5685 +0.4 2.3 protein of unknown function compare
PP_5365 +0.4 2.7 putative fatty acid methyltransferase compare
PP_1155 +0.4 2.4 YaiC/YhcK/ArdA family protein compare
PP_2050 +0.4 2.2 conserved protein of unknown function compare
PP_0928 +0.4 2.9 K+-dependent Na+/Ca+ exchanger related-protein compare
PP_4706 +0.4 1.6 conserved protein of unknown function compare
PP_5232 +0.4 1.6 conserved protein of unknown function compare
PP_2132 +0.4 1.1 Universal stress protein compare
PP_1211 +0.4 1.6 conserved protein of unknown function compare
PP_3020 +0.4 1.9 putative Serine/threonine protein phosphatase compare
PP_1075 +0.4 2.1 glycerol kinase compare
PP_1775 +0.4 2.3 Metallo-beta-lactamase family protein compare
PP_0258 +0.4 1.4 regulator of murein cross-linking compare
PP_0276 +0.4 0.7 Transcriptional regulator, Cro/CI family compare
PP_0407 +0.4 2.1 DnaJ-like protein DjlA compare
PP_3446 +0.4 2.8 threonine deaminase compare
PP_3186 +0.4 1.7 putative Transcriptional activator compare
PP_5681 +0.4 1.6 conserved protein of unknown function compare
PP_1054 +0.4 1.0 Type II secretion pathway protein XcpZ compare
PP_4227 +0.4 0.8 conserved protein of unknown function compare
PP_0916 +0.4 1.3 Amino acid transporter LysE compare
PP_4160 +0.4 2.3 K+ transporting ATPase, KdpB subunit compare
PP_5229 +0.4 1.2 conserved protein of unknown function compare
PP_2189 +0.4 1.7 conserved protein of unknown function compare
PP_0703 +0.4 0.9 putative Transmembrane sensor compare
PP_1392 +0.4 2.1 putative NAD-binding protein compare
PP_1987 +0.4 1.1 Methlytransferase, UbiE/COQ5 family compare
PP_1574 +0.4 1.9 conserved protein of unknown function compare
PP_4579 +0.4 2.2 Transcriptional regulator, LysR family compare
PP_1299 +0.4 2.0 putative amino acid ABC transporter - membrane subunit compare
PP_5267 +0.4 0.7 putative cytochrome c5 compare
PP_1410 +0.4 0.8 conserved protein of unknown function compare
PP_1862 +0.4 1.4 conserved membrane protein of unknown function compare
PP_2078 +0.4 1.5 transcriptional activator protein LysR compare
PP_4629 +0.4 1.5 Sensory box protein compare
PP_5676 +0.4 2.1 conserved protein of unknown function compare
PP_2536 +0.4 1.9 Glutathione S-transferase family protein compare
PP_4974 +0.4 2.1 NhaP-type Na+/H+ and K+/H+ antiporters compare
PP_1261 +0.4 0.9 2-ketoaldonate reductase / hydroxypyruvate/glyoxylate reductase compare
PP_4230 +0.4 2.3 conserved exported protein of unknown function compare
PP_5670 +0.4 1.5 conserved protein of unknown function compare
PP_2110 +0.4 1.4 putative ribosomal large subunit pseudouridine synthase compare
PP_5714 +0.4 1.5 conserved protein of unknown function compare
PP_3913 +0.4 2.2 protein of unknown function compare
PP_2992 +0.4 2.0 conserved exported protein of unknown function compare
PP_3685 +0.4 2.0 conserved protein of unknown function compare
PP_4132 +0.4 2.3 conserved protein of unknown function compare
PP_4294 +0.4 1.9 conserved inner membrane protein compare
PP_5556 +0.4 1.5 putative bacteriophage lysis protein compare
PP_3488 +0.4 1.7 Sco1/SenC family protein compare


Specific Phenotypes

None in this experiment

For Pseudomonas putida KT2440 in soil experiments

For soil Soil=PNNL_Prosser_PlotA_B_20191220; Sterility=nonsterile; Collection=outgrowth_in_LB; SoilTreatment=none; SoilTreatmentTime=72_hrs across organisms