Experiment set24IT046 for Pseudomonas putida KT2440

Compare to:

Soil=PNNL_Prosser_PlotA_B_20191220; Sterility=nonsterile; Collection=outgrowth_in_LB; SoilTreatment=none; SoilTreatmentTime=72_hrs

200 most detrimental genes:

  gene name fitness t score description  
PP_1656 +3.6 10.4 ATP:GTP 3'-pyrophosphotransferase compare
PP_1650 +3.1 19.4 Sensor protein GacS compare
PP_4099 +3.0 15.8 two-componenent system BarA/UvrY - regulatory subunit compare
PP_1655 +2.6 5.6 23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD compare
PP_0166 +2.2 15.5 HlyD family secretion protein compare
PP_0168 +2.2 19.8 putative surface adhesion protein compare
PP_0167 +2.2 17.9 Toxin secretion ATP-binding protein compare
PP_4519 +2.1 17.2 Agglutination protein compare
PP_0165 +2.1 16.3 GGDEF domain protein compare
PP_3398 +1.4 3.4 putative Curli fiber surface-exposed nucleator CsgB compare
PP_0855 +1.3 3.4 conserved protein of unknown function compare
PP_2388 +1.3 4.5 Transporter, LysE family compare
PP_5429 +1.3 5.2 protein of unknown function compare
PP_2070 +1.2 1.0 Transcriptional regulator, AraC family compare
PP_4171 +1.2 9.4 conserved exported protein of unknown function compare
PP_5311 +1.2 7.2 putative signal transduction protein compare
PP_0593 +1.1 1.6 putative ribosome-binding factor compare
PP_0787 +1.1 2.5 quinolinate phosphoribosyltransferase (decarboxylating) monomer compare
PP_1269 +1.1 1.6 Universal stress protein family compare
PP_4073 +1.1 2.6 conserved exported protein of unknown function compare
PP_0672 +1.1 7.9 Sensory box protein compare
PP_3938 +1.0 1.6 conserved protein of unknown function compare
PP_3971 +1.0 2.5 conserved protein of unknown function compare
PP_5571 +1.0 1.6 conserved protein of unknown function compare
PP_5528 +1.0 2.1 conserved protein of unknown function compare
PP_2894 +1.0 4.2 conserved protein of unknown function compare
PP_4196 +0.9 1.4 conserved exported protein of unknown function compare
PP_4317 +0.9 1.7 conserved protein of unknown function compare
PP_2681 +0.9 1.4 coenzyme PQQ synthesis protein D compare
PP_3808 +0.9 2.1 Antibiotic synthesis protein MbtH compare
PP_5008 +0.9 2.0 Poly granule-associated protein compare
PP_4710 +0.9 5.4 tRNA pseudouridine 55 synthase compare
PP_0319 +0.9 1.5 conserved protein of unknown function compare
PP_3392 +0.9 1.5 conserved protein of unknown function compare
PP_1454 +0.9 2.1 conserved protein of unknown function compare
PP_1824 +0.9 1.8 Smr domain protein compare
PP_4271 +0.9 1.2 conserved protein of unknown function compare
PP_4760 +0.9 3.2 Alcohol dehydrogenase, zinc-containing compare
PP_4246 +0.9 5.1 Periplasmic binding protein compare
PP_3110 +0.9 1.2 protein of unknown function compare
PP_4373 +0.8 5.7 Transcriptional regulator FleQ compare
PP_5674 +0.8 2.3 conserved protein of unknown function compare
PP_1237 +0.8 0.8 4-hydroxy-tetrahydrodipicolinate synthase compare
PP_4959 +0.8 6.0 diguanylate cyclase compare
PP_5267 +0.8 1.7 putative cytochrome c5 compare
PP_1574 +0.8 3.6 conserved protein of unknown function compare
PP_4217 +0.8 6.5 outer membrane ferripyoverdine receptor FpvA, TonB-dependent compare
PP_4799 +0.8 0.4 putative Muramoyltetrapeptide carboxypeptidase compare
PP_3205 +0.8 3.6 Fumarylacetoacetate hydrolase family protein compare
PP_1041 +0.8 1.9 twin arginine protein export complex subunit compare
PP_0719 +0.8 0.6 ribosome-associated potassium-dependent informational ATP/GTPase compare
PP_4999 +0.8 0.4 dihydroorotase-like protein compare
PP_4424 +0.8 1.7 Uncharacterized HTH-type transcriptional regulator y4tD compare
PP_4133 +0.8 1.4 Transcriptional regulator-related protein compare
PP_1381 +0.8 1.2 4-carboxymuconolactone decarboxylase compare
PP_5441 +0.8 1.5 protein of unknown function compare
PP_3312 +0.8 1.5 putative Heat shock protein compare
PP_0794 +0.8 2.8 1-phosphofructokinase monomer compare
PP_4531 +0.7 2.6 conserved exported protein of unknown function compare
PP_2459 +0.7 1.1 ribose pyranase compare
PP_5686 +0.7 1.7 protein of unknown function compare
PP_5388 +0.7 3.2 probable exported copper efflux protein compare
PP_4966 +0.7 1.1 transcriptional regulator of methionine metabolism compare
PP_0905 +0.7 1.5 conserved exported protein of unknown function compare
PP_3866 +0.7 1.7 conserved protein of unknown function compare
PP_3761 +0.7 5.5 Sensor histidine kinase/response regulator compare
PP_0827 +0.7 1.9 putative phosphonate transport system permease protein PtxC compare
PP_5487 +0.7 2.4 conserved protein of unknown function compare
PP_5471 +0.7 0.8 putative response regulator receiver protein compare
PP_4100 +0.7 3.1 Transcriptional regulator, Cro/CI family compare
PP_5053 +0.7 3.3 Protein-export protein SecB compare
PP_5619 +0.7 1.4 protein of unknown function compare
PP_2054 +0.7 1.1 putative DNA-binding transcriptional regulator compare
PP_2540 +0.7 1.9 Oxidoreductase, short-chain dehydrogenase/reductase family compare
PP_3892 +0.7 1.0 conserved protein of unknown function compare
PP_3831 +0.7 2.8 conserved protein of unknown function compare
PP_0425 +0.7 1.9 conserved protein of unknown function compare
PP_2633 +0.6 1.1 conserved protein of unknown function compare
PP_3014 +0.6 1.4 conserved exported protein of unknown function compare
PP_3951 +0.6 3.2 3-oxoadipate CoA-transferase subunit A compare
PP_2760 +0.6 2.4 putative ribose transport permease protein compare
PP_0703 +0.6 2.3 putative Transmembrane sensor compare
PP_4957 +0.6 2.1 conserved protein of unknown function compare
PP_1987 +0.6 1.5 Methlytransferase, UbiE/COQ5 family compare
PP_4136 +0.6 0.6 Transcriptional regulator, LuxR family compare
PP_2231 +0.6 1.1 putative permease of the drug/metabolite transporter (DMT) superfamily compare
PP_0210 +0.6 2.9 putative Phycobiliprotein compare
PP_0293 +0.6 0.8 Imidazole glycerol phosphate synthase subunit HisF compare
PP_3241 +0.6 0.9 conserved exported protein of unknown function compare
PP_3280 +0.6 2.5 3-oxoadipyl-CoA/3-oxo-5,6-dehydrosuberyl-CoA thiolase compare
PP_2677 +0.6 2.3 conserved exported protein of unknown function compare
PP_3676 +0.6 2.8 conserved protein of unknown function compare
PP_0025 +0.6 0.9 hypothetical protein compare
PP_3417 +0.6 2.0 D-gluconate transporter compare
PP_0283 +0.6 1.6 Arginine/ornithine transport ATP-binding protein AotP compare
PP_3186 +0.6 2.0 putative Transcriptional activator compare
PP_3320 +0.6 1.4 conserved protein of unknown function compare
PP_2531 +0.6 2.5 putative 5-nucleotidase compare
PP_2882 +0.6 2.3 putative 2-hydroxychromene-2-carboxylate isomerase compare
PP_3571 +0.6 2.5 putative Acetylornithine deacetylase compare
PP_5243 +0.6 1.4 putative hydrolase compare
PP_0188 +0.6 2.2 putative Uroporphyrin-III C-methyltransferase compare
PP_0947 +0.6 2.3 conserved membrane protein of unknown function compare
PP_0999 +0.6 1.7 carbamate kinase compare
PP_4797 +0.6 1.2 conserved protein of unknown function compare
PP_2060 +0.6 1.4 DNA-binding transcriptional dual regulator - SoxR-reversible one-electron oxidation of its [2Fe-2S] cluster, NADPH-dependent compare
PP_0893 +0.6 2.0 ThiJ/PfpI family protein compare
PP_3840 +0.6 0.9 conserved protein of unknown function compare
PP_2747 +0.5 1.1 conserved protein of unknown function compare
PP_2530 +0.5 0.8 conserved protein of unknown function compare
PP_4723 +0.5 0.4 Carbamoyl-phosphate synthase large chain compare
PP_5322 +0.5 2.3 putative metal ion transporter compare
PP_3328 +0.5 1.2 putative Ring-cleaving dioxygenase compare
PP_1706 +0.5 1.4 Nitrite reductase compare
PP_2900 +0.5 1.2 conserved protein of unknown function compare
PP_2078 +0.5 2.5 transcriptional activator protein LysR compare
PP_3935 +0.5 1.0 conserved protein of unknown function compare
PP_0189 +0.5 2.8 putative heme biosynthesis protein compare
PP_2269 +0.5 1.0 putative N-acetylmuramoyl-L-alanine amidase compare
PP_0856 +0.5 0.3 conserved lipoprotein of unknown function compare
PP_2898 +0.5 0.7 conserved exported protein of unknown function compare
PP_1480 +0.5 1.5 conserved protein of unknown function compare
PP_4832 +0.5 1.8 Precorrin-6x reductase compare
PP_0900 +0.5 0.9 PAP2 family protein compare
PP_1876 +0.5 1.7 putative ATP/GTP-binding protein of the AAA+ family compare
PP_4015 +0.5 2.0 HflD-like high frequency lysogenization protein compare
PP_1122 +0.5 1.2 OmpA family protein compare
PP_1632 +0.5 1.1 conserved protein of unknown function compare
PP_0414 +0.5 2.2 Polyamine ABC transporter, permease protein compare
PP_1501 +0.5 2.2 conserved protein of unknown function compare
PP_4163 +0.5 2.1 conserved exported protein of unknown function compare
PP_5711 +0.5 1.7 protein of unknown function compare
PP_1048 +0.5 1.2 putative protein secretion protein for export compare
PP_3194 +0.5 1.5 conserved protein of unknown function compare
PP_3672 +0.5 1.0 conserved protein of unknown function compare
PP_4230 +0.5 2.3 conserved exported protein of unknown function compare
PP_2330 +0.5 1.9 conserved protein of unknown function compare
PP_5232 +0.5 1.7 conserved protein of unknown function compare
PP_5717 +0.5 0.9 conserved protein of unknown function compare
PP_2386 +0.5 2.8 conserved protein of unknown function compare
PP_0412 +0.5 2.1 Polyamine ABC transporter, periplasmic polyamine-binding protein compare
PP_5201 +0.5 1.1 conserved protein of unknown function, UPF0149 family compare
PP_3762 +0.5 1.5 Response regulator compare
PP_0303 +0.5 1.4 dehydrocarnitine cleavage enzyme compare
PP_1210 +0.5 1.7 DNA-binding stress protein compare
PP_3779 +0.5 2.2 Transcriptional regulator, LysR family compare
PP_4850 +0.5 1.6 conserved membrane protein of unknown function compare
PP_2592 +0.5 1.3 Ferric siderophore ABC transporter, ATP-binding protein compare
PP_5017 +0.5 0.8 Sec-independent protein translocase protein TatB compare
PP_0694 +0.5 1.8 conserved protein of unknown function compare
PP_4703 +0.5 2.2 conserved protein of unknown function compare
PP_1439 +0.5 1.0 conserved exported protein of unknown function compare
PP_0998 +0.5 2.2 conserved protein of unknown function compare
PP_5712 +0.5 1.2 conserved protein of unknown function compare
PP_4480 +0.5 2.3 arginine N-succinyltransferase, subunit alpha compare
PP_0839 +0.5 0.8 tRNA Cm32/Um32 methyltransferase compare
PP_4697 +0.5 1.0 poly(A) polymerase compare
PP_4102 +0.5 0.9 conserved protein of unknown function compare
PP_3027 +0.5 1.5 conserved protein of unknown function compare
PP_1967 +0.5 2.3 tRNA D-aminoacylase compare
PP_5707 +0.5 2.1 conserved protein of unknown function compare
PP_3289 +0.5 1.5 Acetyltransferase, GNAT family compare
PP_2000 +0.5 0.5 amidophosphoribosyl transferase compare
PP_2404 +0.5 2.0 conserved exported protein of unknown function compare
PP_0627 +0.5 1.2 conserved protein of unknown function compare
PP_3909 +0.5 1.4 conserved protein of unknown function compare
PP_5661 +0.5 1.4 putative lipoprotein compare
PP_2255 +0.4 1.7 C4-dicarboxylate transport protein compare
PP_4930 +0.4 1.5 putative small multidrug resistance protein compare
PP_0540 +0.4 2.0 conserved inner membrane protein compare
PP_0656 +0.4 2.2 putative Amino acid ABC transporter, permease protein compare
PP_3441 +0.4 2.2 conserved protein of unknown function compare
PP_5451 +0.4 1.7 protein of unknown function compare
PP_2825 +0.4 1.7 putative Integrase compare
PP_1193 +0.4 1.6 conserved membrane protein of unknown function compare
PP_1935 +0.4 1.0 Transcriptional regulator, Cro/CI family compare
PP_5001 +0.4 1.4 protease HslVU, ATPase component compare
PP_3880 +0.4 0.8 conserved exported protein of unknown function compare
PP_2222 +0.4 1.4 conserved protein of unknown function compare
PP_5437 +0.4 1.9 protein of unknown function compare
PP_3904 +0.4 0.9 conserved protein of unknown function compare
PP_0837 +0.4 1.9 putative regulator of flagellation compare
PP_4349 +0.4 2.0 conserved protein of unknown function compare
PP_2132 +0.4 1.0 Universal stress protein compare
PP_4311 +0.4 1.9 putative D-amino acid dehydrogenase 2 small subunit compare
PP_5533 +0.4 0.8 conserved protein of unknown function compare
PP_1552 +0.4 1.4 putative Phage replication protein compare
PP_1275 +0.4 1.7 conserved protein of unknown function compare
PP_0634 +0.4 1.7 Fimbrial protein compare
PP_1639 +0.4 2.8 conserved protein of unknown function, SprT family compare
PP_2899 +0.4 0.7 conserved exported protein of unknown function compare
PP_1155 +0.4 2.2 YaiC/YhcK/ArdA family protein compare
PP_0943 +0.4 1.9 conserved protein of unknown function compare
PP_5552 +0.4 1.2 conserved protein of unknown function compare
PP_2281 +0.4 1.2 putative Capsid assembly protein compare
PP_2858 +0.4 0.8 conserved exported protein of unknown function compare
PP_2996 +0.4 1.9 conserved protein of unknown function compare
PP_2457 +0.4 2.5 DNA-binding transcriptional repressor compare
PP_5640 +0.4 1.0 conserved protein of unknown function compare
PP_1709 +0.4 1.0 Fumarylacetoacetate hydrolase family protein compare


Specific Phenotypes

None in this experiment

For Pseudomonas putida KT2440 in soil experiments

For soil Soil=PNNL_Prosser_PlotA_B_20191220; Sterility=nonsterile; Collection=outgrowth_in_LB; SoilTreatment=none; SoilTreatmentTime=72_hrs across organisms