Experiment set24IT045 for Pseudomonas putida KT2440

Compare to:

Soil=PNNL_Prosser_PlotA_B_20191220; Sterility=sterile; Collection=outgrowth_in_LB; SoilTreatment=none; SoilTreatmentTime=72_hrs

200 most important genes:

  gene name fitness t score description  
PP_0760 -6.6 -6.5 conserved membrane protein of unknown function compare
PP_0164 -6.2 -6.1 conserved protein of unknown function compare
PP_1623 -5.1 -11.0 RNA polymerase, sigma S (sigma 38) factor compare
PP_3484 -5.1 -7.2 Response regulator receiver protein compare
PP_5289 -4.4 -4.3 Acetylglutamate kinase compare
PP_1198 -4.1 -5.1 transcriptional regulator, Cro/CI family (higA antitoxin like) compare
PP_1088 -4.1 -12.8 Argininosuccinate synthase compare
PP_4994 -3.8 -4.8 conserved protein of unknown function compare
PP_0184 -3.7 -6.7 Argininosuccinate lyase compare
PP_4902 -3.6 -4.9 Oligoribonuclease compare
PP_0293 -3.6 -2.6 Imidazole glycerol phosphate synthase subunit HisF compare
PP_1493 -3.4 -3.9 chemotaxis response regulator protein-glutamate methylesterase of group 3 operon compare
PP_1898 -3.4 -3.6 MotA/TolQ/ExbB proton channel family protein compare
PP_2378 -3.3 -2.3 Fe/S biogenesis protein NfuA compare
PP_4008 -3.0 -9.0 ATP-dependent serine protease compare
PP_1734 -2.9 -6.4 Probable septum site-determining protein MinC compare
PP_0966 -2.9 -10.4 Histidinol dehydrogenase compare
PP_4943 -2.9 -3.8 putative Glycosyl transferase compare
PP_4342 -2.8 -4.2 flagellar synthesis regulator, putative ATPase compare
PP_4364 -2.7 -3.3 putative Anti-sigma F factor antagonist compare
PP_0292 -2.7 -4.0 1-(5-phosphoribosyl)-5-((5-phosphoribosylamino)methylideneamino)imidazole-4-carboxamide isomerase (EC 5.3.1.16) (from data) compare
PP_5185 -2.7 -6.9 acetylglutamate kinase-like protein (regulatory domain)/amino acid N-acetyltransferase compare
PP_0290 -2.7 -6.2 Imidazole glycerol phosphate synthase subunit HisH compare
PP_1733 -2.6 -4.7 membrane ATPase of the MinC-MinD-MinE system compare
PP_4004 -2.6 -4.2 DNA translocase FtsK compare
PP_4058 -2.6 -11.1 1,4-alpha-glucan branching enzyme compare
PP_1428 -2.6 -2.5 Sigma factor AlgU negative regulatory protein compare
PP_5095 -2.6 -1.7 pyrroline-5-carboxylate reductase compare
PP_0406 -2.5 -3.8 Nucleotidyltransferase family protein compare
PP_4122 -2.5 -2.4 proton-pumping NADH:ubiquinone oxidoreductase, respiratory complex I, subunit E compare
PP_4726 -2.5 -2.7 Chaperone protein DnaJ compare
PP_4804 -2.5 -1.7 RlpA-like lipoprotein compare
PP_3821 -2.5 -10.1 UTP-glucose-1-phosphate uridylyltransferase compare
PP_2414 -2.5 -3.3 conserved exported protein of unknown function compare
PP_0967 -2.5 -8.6 histidinol-phosphate aminotransferase (EC 2.6.1.9) (from data) compare
PP_1985 -2.5 -5.9 3-isopropylmalate dehydratase large subunit compare
PP_4131 -2.5 -6.0 NADH-quinone oxidoreductase subunit N compare
PP_4890 -2.5 -6.0 ATP phosphoribosyltransferase regulatory subunit compare
PP_5014 -2.4 -3.6 Phosphoribosyl-AMP cyclohydrolase compare
PP_1097 -2.4 -2.5 Methionine--tRNA ligase compare
PP_0289 -2.4 -6.5 Imidazoleglycerol-phosphate dehydratase compare
PP_2402 -2.4 -3.2 putative Sensor histidine kinase compare
PP_3511 -2.4 -9.5 Branched-chain-amino-acid aminotransferase compare
PP_1079 -2.3 -5.7 Ornithine carbamoyltransferase compare
PP_4129 -2.3 -3.4 NADH:ubiquinone oxidoreductase, membrane subunit L compare
PP_0291 -2.3 -3.4 conserved protein of unknown function compare
PP_5327 -2.3 -3.8 putative phosphate ABC transporter, permease subunit compare
PP_4375 -2.3 -7.3 flagellar chaperone, inhibits premature FliC assembly compare
PP_1217 -2.3 -5.6 Holliday junction ATP-dependent DNA helicase RuvB compare
PP_4124 -2.3 -4.0 NADH-quinone oxidoreductase subunit G compare
PP_4066 -2.3 -4.1 methylglutaconyl-CoA hydratase compare
PP_1779 -2.3 -7.2 Lipopolysaccharide ABC export system, ATP-binding protein compare
PP_4120 -2.2 -3.6 NADH-quinone oxidoreductase subunit B compare
PP_2145 -2.2 -4.6 beta-N-acetylglucosaminidase compare
PP_0846 -2.1 -1.8 DnaK-like molecular chaperone specific for IscU compare
PP_0852 -2.1 -5.7 Transcriptional regulator, Cro/CI family compare
PP_3649 -2.1 -4.4 Transcriptional regulator, GntR family compare
PP_1224 -2.1 -6.4 periplasmic subunit of the TolQRA transport system compare
PP_4964 -2.1 -3.9 D-erythrose 4-phosphate dehydrogenase compare
PP_0965 -2.0 -8.2 ATP phosphoribosyltransferase (EC 2.4.2.17) (from data) compare
PP_2903 -2.0 -2.7 peptidyl-prolyl cis-trans isomerase B (rotamase B) compare
PP_5217 -2.0 -13.1 Polyphosphate kinase compare
PP_4895 -1.9 -3.1 tRNA dimethylallyltransferase compare
PP_1216 -1.9 -3.7 Holliday junction ATP-dependent DNA helicase RuvA compare
PP_4679 -1.9 -7.0 acetohydroxybutanoate synthase / acetolactate synthase compare
PP_5128 -1.9 -8.2 Dihydroxy-acid dehydratase compare
PP_4126 -1.9 -1.7 NADH-quinone oxidoreductase subunit I compare
PP_2433 -1.8 -2.3 conserved protein of unknown function compare
PP_1778 -1.8 -5.7 Lipopolysaccharide ABC export system, permease protein compare
PP_4370 -1.8 -5.2 Flagellar hook-basal body complex protein FliE compare
PP_5328 -1.8 -2.4 putative phosphate transport system permease protein compare
PP_4909 -1.8 -5.1 phosphoserine phosphatase compare
PP_4121 -1.8 -4.0 NADH-quinone oxidoreductase subunit C/D compare
PP_4680 -1.8 -10.5 acetohydroxybutanoate synthase / acetolactate synthase compare
PP_4391 -1.7 -5.8 flagellar basal-body rod protein FlgB compare
PP_4383 -1.7 -6.8 Flagellar P-ring protein compare
PP_4337 -1.7 -4.6 chemotaxis response regulator protein-glutamate methylesterase of group 1 operon compare
PP_4380 -1.7 -10.3 Flagellar hook-associated protein FlgL compare
PP_4941 -1.7 -7.4 conserved exported protein of unknown function compare
PP_4678 -1.7 -8.7 Ketol-acid reductoisomerase compare
PP_5145 -1.7 -13.2 phosphoenolpyruvate-dependent regulator (with NPR and NTR proteins) compare
PP_4696 -1.7 -4.1 Nitrogen regulation protein NR(I) compare
PP_4942 -1.7 -2.3 conserved protein of unknown function compare
PP_0396 -1.7 -9.2 conserved protein of unknown function compare
PP_4936 -1.7 -7.5 O-antigen polymerase compare
PP_4368 -1.7 -5.0 flagellar motor switch protein compare
PP_5706 -1.6 -2.6 Sec translocation complex - SecG subunit compare
PP_4353 -1.6 -4.8 Flagellar biosynthetic protein fliR compare
PP_2862 -1.6 -4.7 Undecaprenyl-diphosphatase compare
PP_4940 -1.6 -9.2 Putative glycosyltransferase compare
PP_4376 -1.6 -9.3 flagellar filament capping protein compare
PP_4366 -1.6 -8.8 flagellum-specific ATP synthase compare
PP_4344 -1.6 -7.5 flagellar export pore protein compare
PP_2336 -1.6 -1.5 aconitate hydratase 1 compare
PP_3946 -1.6 -1.9 HTH-type transcriptional repressor NicR compare
PP_5310 -1.6 -5.2 junction-specific ATP-dependent DNA helicase compare
PP_5230 -1.6 -3.1 Tyrosine recombinase XerC compare
PP_1994 -1.6 -2.3 tRNA pseudouridine (38-40)synthase compare
PP_0397 -1.6 -10.2 protein kinase compare
PP_4361 -1.5 -7.0 Flagellar hook-length control protein FliK compare
PP_1988 -1.5 -5.3 3-isopropylmalate dehydrogenase compare
PP_0951 -1.5 -6.1 Ribosome hibernation promoting factor compare
PP_4396 -1.5 -2.8 conserved protein of unknown function compare
PP_4358 -1.5 -6.7 flagellar synthesis, switching and energizing component compare
PP_2121 -1.5 -2.5 putative Lipoprotein compare
PP_4785 -1.5 -5.0 conserved exported protein of unknown function compare
PP_4378 -1.5 -8.7 flagellin, filament structural protein compare
PP_1099 -1.5 -2.4 Cold shock protein CapB compare
PP_5015 -1.5 -2.5 phosphoribosyl-ATP pyrophosphatase (EC 3.6.1.31) (from data) compare
PP_0630 -1.5 -1.8 DNA gyrase inhibitor YacG compare
PP_4262 -1.5 -2.2 Cytochrome oxidase maturation protein, cbb3-type compare
PP_4381 -1.5 -8.4 Flagellar hook-associated protein FlgK compare
PP_4388 -1.5 -10.5 Flagellar hook protein FlgE compare
PP_5216 -1.5 -2.3 exopolyphosphatase compare
PP_1036 -1.5 -6.3 membrane-bound lytic murein transglycosylase F compare
PP_4369 -1.5 -7.3 Flagellar M-ring protein compare
PP_4365 -1.4 -4.4 Flagellar protein FliJ compare
PP_4340 -1.4 -3.9 response regulator for chemotactic signal transduction compare
PP_4880 -1.4 -7.4 exoribonuclease R compare
PP_1986 -1.4 -2.1 3-isopropylmalate dehydratase small subunit compare
PP_5338 -1.4 -3.9 aspartate ammonia-lyase compare
PP_4385 -1.4 -5.6 flagellar basal-body rod protein FlgG compare
PP_5090 -1.4 -1.9 putative cell division protein compare
PP_2144 -1.4 -3.8 Transcriptional regulator, TetR family compare
PP_1318 -1.4 -5.8 Cytochrome b compare
PP_5748 -1.4 -2.0 cytochrome c heme lyase subunit compare
PP_4341 -1.4 -4.7 RNA polymerase sigma 28 (sigma F) factor for class III flagellar operons compare
PP_4892 -1.4 -5.4 integral membrane ATP-dependent zinc metallopeptidase / HflK-HflC complex compare
PP_0395 -1.4 -7.9 putative type IV piliation protein compare
PP_4384 -1.3 -6.0 Flagellar L-ring protein compare
PP_2371 -1.3 -4.1 Sulphite reductase hemoprotein, beta subunit compare
PP_4904 -1.3 -5.4 Flagellar motor rotation protein compare
PP_2322 -1.3 -6.6 Major outer membrane lipoprotein compare
PP_4389 -1.3 -4.4 Flagellar basal-body rod modification protein FlgD compare
PP_1025 -1.3 -7.4 2-isopropylmalate synthase compare
PP_2390 -1.3 -6.1 Transcriptional regulator, LysR family compare
PP_4065 -1.3 -6.6 methylcrotonyl-CoA carboxylase biotin-containing subunit beta compare
PP_4067 -1.3 -5.5 methylcrotonyl-CoA carboxylase biotin-containing subunit alpha compare
PP_2215 -1.3 -2.5 acetyl-CoA acetyltransferase compare
PP_4390 -1.3 -6.5 flagellar basal-body rod protein FlgC compare
PP_2217 -1.3 -1.4 enoyl-CoA hydratase compare
PP_4382 -1.3 -6.2 Peptidoglycan hydrolase FlgJ compare
PP_4905 -1.3 -6.2 Flagellar motor rotation protein compare
PP_0504 -1.3 -4.8 Outer membrane protein OprG compare
PP_0957 -1.3 -1.7 D-arabinose 5-phosphate isomerase compare
PP_4392 -1.3 -6.4 chemotaxis protein methyltransferase compare
PP_0872 -1.3 -4.5 Peptide chain release factor 3 compare
PP_3481 -1.3 -3.5 conserved exported protein of unknown function compare
PP_4338 -1.3 -6.7 Chemotaxis histidine kinase CheA compare
PP_4373 -1.2 -8.4 Transcriptional regulator FleQ compare
PP_5028 -1.2 -3.2 proline iminopeptidase compare
PP_4332 -1.2 -4.2 Chemotaxis protein CheW compare
PP_0833 -1.2 -0.8 queuine tRNA-ribosyltransferase compare
PP_5350 -1.2 -2.5 Transcriptional regulator, RpiR family compare
PP_1268 -1.2 -3.0 putative HtrA suppressor protein sohA compare
PP_1528 -1.2 -1.6 conserved protein of unknown function compare
PP_4354 -1.2 -3.2 flagellar export apparatus subunit compare
PP_0914 -1.2 -6.1 GGDEF domain protein compare
PP_3833 -1.2 -2.9 Response regulator compare
PP_1322 -1.2 -2.0 putative Lipoprotein compare
PP_4394 -1.2 -4.6 flagella basal body P-ring formation protein compare
PP_4620 -1.2 -6.0 Fumarylacetoacetase compare
PP_4352 -1.2 -6.6 flagellin export apparatus, substrate specificity protein compare
PP_4546 -1.2 -2.6 ATP-dependent helicase HrpA compare
PP_0435 -1.2 -5.5 Peptidase, M23/M37 family compare
PP_0949 -1.2 -3.3 putative ATP-binding protein UPF0042 compare
PP_0368 -1.2 -7.8 putative Acyl-CoA dehydrogenase compare
PP_5146 -1.2 -5.2 RNA pyrophosphohydrolase compare
PP_4286 -1.2 -4.5 allantoinase compare
PP_4471 -1.2 -2.9 Magnesium transporter compare
PP_4938 -1.1 -7.1 putative Glycosyl transferase compare
PP_5329 -1.1 -1.9 putative phosphate ABC transporter, periplasmic phosphate-binding protein compare
PP_4356 -1.1 -3.4 Flagellar protein FliO compare
PP_1319 -1.1 -3.3 Ubiquinol--cytochrome c reductase, cytochrome c1 compare
PP_4379 -1.1 -2.3 Beta-ketoacyl-acyl-carrier-protein synthase I compare
PP_2028 -1.1 -3.7 conserved protein of unknown function containing tetratricopeptide (TPR) domain repeat compare
PP_4355 -1.1 -1.2 flagellar export apparatus subunit compare
PP_1317 -1.1 -2.9 Ubiquinol-cytochrome c reductase iron-sulfur subunit compare
PP_2027 -1.1 -5.3 conserved exported protein of unknown function compare
PP_1804 -1.1 -4.8 Glycosyl transferase WbpL compare
PP_4386 -1.1 -4.5 flagellar basal-body rod protein FlgF compare
PP_1633 -1.1 -3.0 conserved exported protein of unknown function compare
PP_4367 -1.1 -2.6 Flagellar assembly protein FliH compare
PP_0123 -1.1 -6.2 DNA polymerase I, 5 compare
PP_2214 -1.1 -2.9 3-hydroxyacyl-CoA dehydrogenase type-2 compare
PP_5295 -1.1 -1.9 conserved protein of unknown function compare
PP_4343 -1.1 -3.8 Flagellar biosynthesis protein FlhF compare
PP_1293 -1.1 -1.5 molybdopterin synthase small subunit compare
PP_4891 -1.1 -2.9 integral membrane ATP-dependent zinc metallopeptidase / HflK-HflC complex compare
PP_4470 -1.1 -4.3 putative transcriptional regulator (Arc domain-containing) compare
PP_5346 -1.1 -4.8 pyruvate carboxylase subunit B compare
PP_4214 -1.1 -2.5 pyoverdine biosynthesis related protein compare
PP_0122 -1.1 -3.3 conserved exported protein of unknown function compare
PP_0508 -1.1 -2.9 conserved exported protein of unknown function compare
PP_1328 -1.0 -2.1 Protein MraZ compare
PP_2335 -1.0 -5.2 methylcitrate synthase compare
PP_2196 -1.0 -2.5 agmatinase compare
PP_3551 -1.0 -1.4 DNA-binding response regulator, LuxR family compare
PP_0888 -1.0 -1.5 Photosynthetic apparatus regulatory protein RegA compare
PP_3999 -1.0 -3.7 Uroporphyrinogen-III C-methyltransferase/Precorrin-2 dehydrogenase/Sirohydrochlorin ferrochelatase compare


Specific Phenotypes

None in this experiment

For Pseudomonas putida KT2440 in soil experiments

For soil Soil=PNNL_Prosser_PlotA_B_20191220; Sterility=sterile; Collection=outgrowth_in_LB; SoilTreatment=none; SoilTreatmentTime=72_hrs across organisms