Experiment set24IT044 for Pseudomonas putida KT2440

Compare to:

Soil=PNNL_Prosser_PlotA_B_20191220; Sterility=sterile; Collection=outgrowth_in_LB; SoilTreatment=none; SoilTreatmentTime=72_hrs

200 most important genes:

  gene name fitness t score description  
PP_3484 -6.6 -4.6 Response regulator receiver protein compare
PP_0760 -5.9 -4.9 conserved membrane protein of unknown function compare
PP_1623 -5.4 -8.6 RNA polymerase, sigma S (sigma 38) factor compare
PP_1898 -5.0 -3.5 MotA/TolQ/ExbB proton channel family protein compare
PP_0164 -4.6 -8.3 conserved protein of unknown function compare
PP_5014 -4.4 -3.0 Phosphoribosyl-AMP cyclohydrolase compare
PP_1198 -4.0 -4.7 transcriptional regulator, Cro/CI family (higA antitoxin like) compare
PP_4994 -3.5 -5.6 conserved protein of unknown function compare
PP_0290 -3.4 -7.9 Imidazole glycerol phosphate synthase subunit HisH compare
PP_5289 -3.3 -3.9 Acetylglutamate kinase compare
PP_1088 -3.3 -10.1 Argininosuccinate synthase compare
PP_0184 -3.2 -4.9 Argininosuccinate lyase compare
PP_4342 -3.1 -3.0 flagellar synthesis regulator, putative ATPase compare
PP_4058 -3.1 -11.3 1,4-alpha-glucan branching enzyme compare
PP_1986 -2.9 -3.3 3-isopropylmalate dehydratase small subunit compare
PP_0293 -2.8 -2.4 Imidazole glycerol phosphate synthase subunit HisF compare
PP_4902 -2.8 -3.3 Oligoribonuclease compare
PP_2402 -2.8 -2.7 putative Sensor histidine kinase compare
PP_1217 -2.8 -6.1 Holliday junction ATP-dependent DNA helicase RuvB compare
PP_1734 -2.7 -5.2 Probable septum site-determining protein MinC compare
PP_4008 -2.7 -7.6 ATP-dependent serine protease compare
PP_1733 -2.6 -4.0 membrane ATPase of the MinC-MinD-MinE system compare
PP_4726 -2.6 -3.5 Chaperone protein DnaJ compare
PP_0966 -2.6 -8.3 Histidinol dehydrogenase compare
PP_1428 -2.5 -1.7 Sigma factor AlgU negative regulatory protein compare
PP_0292 -2.5 -3.3 1-(5-phosphoribosyl)-5-((5-phosphoribosylamino)methylideneamino)imidazole-4-carboxamide isomerase (EC 5.3.1.16) (from data) compare
PP_1079 -2.5 -5.2 Ornithine carbamoyltransferase compare
PP_2145 -2.4 -3.6 beta-N-acetylglucosaminidase compare
PP_4129 -2.4 -1.7 NADH:ubiquinone oxidoreductase, membrane subunit L compare
PP_4679 -2.4 -6.0 acetohydroxybutanoate synthase / acetolactate synthase compare
PP_4131 -2.4 -3.2 NADH-quinone oxidoreductase subunit N compare
PP_5327 -2.4 -2.8 putative phosphate ABC transporter, permease subunit compare
PP_5185 -2.3 -5.7 acetylglutamate kinase-like protein (regulatory domain)/amino acid N-acetyltransferase compare
PP_5310 -2.3 -6.8 junction-specific ATP-dependent DNA helicase compare
PP_2088 -2.3 -3.1 RNA polymerase sigma factor SigX compare
PP_2214 -2.2 -3.7 3-hydroxyacyl-CoA dehydrogenase type-2 compare
PP_1215 -2.2 -1.6 Crossover junction endodeoxyribonuclease RuvC compare
PP_3821 -2.2 -8.5 UTP-glucose-1-phosphate uridylyltransferase compare
PP_3511 -2.1 -6.1 Branched-chain-amino-acid aminotransferase compare
PP_1493 -2.1 -3.5 chemotaxis response regulator protein-glutamate methylesterase of group 3 operon compare
PP_4909 -2.1 -6.1 phosphoserine phosphatase compare
PP_5045 -2.1 -4.2 tRNA sulfurtransferase compare
PP_4943 -2.0 -2.6 putative Glycosyl transferase compare
PP_0406 -2.0 -2.7 Nucleotidyltransferase family protein compare
PP_1985 -2.0 -4.7 3-isopropylmalate dehydratase large subunit compare
PP_4364 -2.0 -3.6 putative Anti-sigma F factor antagonist compare
PP_0735 -2.0 -2.3 molybdopterin-synthase adenylyltransferase compare
PP_4890 -1.9 -4.6 ATP phosphoribosyltransferase regulatory subunit compare
PP_0967 -1.9 -7.2 histidinol-phosphate aminotransferase (EC 2.6.1.9) (from data) compare
PP_1216 -1.9 -3.0 Holliday junction ATP-dependent DNA helicase RuvA compare
PP_4375 -1.9 -6.6 flagellar chaperone, inhibits premature FliC assembly compare
PP_4942 -1.9 -3.1 conserved protein of unknown function compare
PP_0951 -1.9 -6.7 Ribosome hibernation promoting factor compare
PP_0965 -1.9 -6.2 ATP phosphoribosyltransferase (EC 2.4.2.17) (from data) compare
PP_1237 -1.8 -1.2 4-hydroxy-tetrahydrodipicolinate synthase compare
PP_4680 -1.8 -9.3 acetohydroxybutanoate synthase / acetolactate synthase compare
PP_0630 -1.8 -1.7 DNA gyrase inhibitor YacG compare
PP_0003 -1.8 -2.7 16S RNA methyltransferase compare
PP_0289 -1.7 -4.8 Imidazoleglycerol-phosphate dehydratase compare
PP_4880 -1.7 -7.2 exoribonuclease R compare
PP_0291 -1.7 -2.6 conserved protein of unknown function compare
PP_4917 -1.7 -4.1 3',5'-cyclic-nucleotide phosphodiesterase compare
PP_2433 -1.7 -2.2 conserved protein of unknown function compare
PP_4471 -1.7 -3.5 Magnesium transporter compare
PP_2029 -1.7 -2.7 von Willebrand factor type A domain protein compare
PP_4696 -1.7 -3.8 Nitrogen regulation protein NR(I) compare
PP_0395 -1.7 -8.7 putative type IV piliation protein compare
PP_2378 -1.7 -2.2 Fe/S biogenesis protein NfuA compare
PP_3649 -1.7 -2.5 Transcriptional regulator, GntR family compare
PP_1988 -1.7 -5.2 3-isopropylmalate dehydrogenase compare
PP_4124 -1.6 -2.9 NADH-quinone oxidoreductase subunit G compare
PP_1224 -1.6 -5.6 periplasmic subunit of the TolQRA transport system compare
PP_0949 -1.6 -4.4 putative ATP-binding protein UPF0042 compare
PP_3916 -1.6 -3.2 conserved protein of unknown function compare
PP_5217 -1.6 -9.0 Polyphosphate kinase compare
PP_4262 -1.6 -2.1 Cytochrome oxidase maturation protein, cbb3-type compare
PP_1536 -1.6 -3.9 conserved protein of unknown function compare
PP_1362 -1.6 -3.0 pyruvate kinase II compare
PP_3926 -1.6 -1.5 short-chain dehydrogenase compare
PP_2328 -1.5 -2.9 Phosphoadenosine phosphosulfate reductase compare
PP_4936 -1.5 -6.6 O-antigen polymerase compare
PP_0397 -1.5 -9.6 protein kinase compare
PP_5328 -1.5 -1.7 putative phosphate transport system permease protein compare
PP_0789 -1.5 -3.4 N-acetyl-anhydromuramyl-L-alanine-amidase compare
PP_2327 -1.5 -3.9 transcriptional dual regulator / CysB-O-acetyl-L-serine compare
PP_4470 -1.5 -3.6 putative transcriptional regulator (Arc domain-containing) compare
PP_4964 -1.5 -2.4 D-erythrose 4-phosphate dehydrogenase compare
PP_2341 -1.5 -1.5 6-carboxy-5,6,7,8-tetrahydropterin synthase compare
PP_5128 -1.4 -4.8 Dihydroxy-acid dehydratase compare
PP_2280 -1.4 -1.3 conserved protein of unknown function compare
PP_0119 -1.4 -2.3 putative zinc uptake regulation protein ZUR compare
PP_0435 -1.4 -5.0 Peptidase, M23/M37 family compare
PP_0393 -1.4 -1.0 putative 2-amino-4-hydroxy-6-hydroxymethyldihydropteridine pyrophosphokinase compare
PP_1778 -1.4 -4.2 Lipopolysaccharide ABC export system, permease protein compare
PP_5015 -1.4 -2.4 phosphoribosyl-ATP pyrophosphatase (EC 3.6.1.31) (from data) compare
PP_4122 -1.4 -1.4 proton-pumping NADH:ubiquinone oxidoreductase, respiratory complex I, subunit E compare
PP_1779 -1.4 -5.3 Lipopolysaccharide ABC export system, ATP-binding protein compare
PP_4678 -1.4 -7.8 Ketol-acid reductoisomerase compare
PP_0846 -1.4 -1.2 DnaK-like molecular chaperone specific for IscU compare
PP_1131 -1.4 -2.2 outer membrane lipoprotein compare
PP_0775 -1.4 -1.9 conserved protein of unknown function compare
PP_2883 -1.4 -2.1 conserved protein of unknown function compare
PP_4941 -1.4 -4.3 conserved exported protein of unknown function compare
PP_4895 -1.4 -1.8 tRNA dimethylallyltransferase compare
PP_4785 -1.4 -4.1 conserved exported protein of unknown function compare
PP_4874 -1.4 -1.0 50S ribosomal protein L9 compare
PP_1055 -1.3 -2.0 Type II secretion pathway protein GspN compare
PP_4098 -1.3 -2.1 UvrABC system protein C compare
PP_5652 -1.3 -2.0 conserved protein of unknown function, phage origin compare
PP_2390 -1.3 -5.2 Transcriptional regulator, LysR family compare
PP_1729 -1.3 -2.1 conserved protein of unknown function compare
PP_5145 -1.3 -9.3 phosphoenolpyruvate-dependent regulator (with NPR and NTR proteins) compare
PP_5100 -1.3 -2.7 dITP/XTP pyrophosphatase compare
PP_t29 -1.3 -1.5 tRNA-Ala compare
PP_1097 -1.3 -1.5 Methionine--tRNA ligase compare
PP_3307 -1.3 -1.7 conserved protein of unknown function compare
PP_4700 -1.3 -1.5 pantothenate synthetase compare
PP_5502 -1.3 -2.5 ribosome modulation factor compare
PP_0852 -1.3 -3.6 Transcriptional regulator, Cro/CI family compare
PP_0396 -1.3 -7.7 conserved protein of unknown function compare
PP_5548 -1.2 -2.4 protein of unknown function compare
PP_1468 -1.2 -2.3 Tyrosine recombinase XerD compare
PP_3519 -1.2 -1.0 putative Lipoprotein compare
PP_2370 -1.2 -2.0 conserved protein of unknown function compare
PP_2030 -1.2 -2.1 conserved protein of unknown function compare
PP_0673 -1.2 -2.3 conserved protein of unknown function compare
PP_1028 -1.2 -2.4 Transcriptional regulator, LysR family compare
PP_5350 -1.2 -2.6 Transcriptional regulator, RpiR family compare
PP_2322 -1.2 -5.1 Major outer membrane lipoprotein compare
PP_4828 -1.2 -1.0 Precorrin-8X methylmutase compare
PP_4120 -1.2 -2.1 NADH-quinone oxidoreductase subunit B compare
PP_1764 -1.2 -2.1 Phosphoglycolate phosphatase 2 compare
PP_3073 -1.2 -4.1 3-hydroxybutyrate dehydrogenase compare
PP_1318 -1.2 -4.7 Cytochrome b compare
PP_4337 -1.2 -4.1 chemotaxis response regulator protein-glutamate methylesterase of group 1 operon compare
PP_5640 -1.1 -1.4 conserved protein of unknown function compare
PP_5216 -1.1 -1.3 exopolyphosphatase compare
PP_1826 -1.1 -2.2 Hydrolase, isochorismatase family compare
PP_4392 -1.1 -3.6 chemotaxis protein methyltransferase compare
PP_5027 -1.1 -1.6 D-tyrosyl-tRNA(Tyr) deacylase compare
PP_5445 -1.1 -1.8 conserved protein of unknown function compare
PP_1036 -1.1 -5.0 membrane-bound lytic murein transglycosylase F compare
PP_4130 -1.1 -2.4 NADH:ubiquinone oxidoreductase, membrane subunit M compare
PP_0937 -1.1 -3.7 endoribonuclease G (RNAse G) compare
PP_5393 -1.1 -1.3 putative metal-binding chaperone compare
PP_3481 -1.1 -2.6 conserved exported protein of unknown function compare
PP_2475 -1.1 -2.4 Transcriptional regulator, TetR family compare
PP_2215 -1.1 -2.7 acetyl-CoA acetyltransferase compare
PP_3110 -1.1 -1.8 protein of unknown function compare
PP_4121 -1.0 -2.8 NADH-quinone oxidoreductase subunit C/D compare
PP_3064 -1.0 -1.9 Phage tail protein compare
PP_1589 -1.0 -4.7 uridylyltransferase compare
PP_t12 -1.0 -0.9 tRNA-Thr compare
PP_1328 -1.0 -1.1 Protein MraZ compare
PP_4204 -1.0 -2.8 antitoxin of the type II toxin-antitoxin MqsRA system and DNA-binding transcriptional repressor compare
PP_4891 -1.0 -2.9 integral membrane ATP-dependent zinc metallopeptidase / HflK-HflC complex compare
PP_2027 -1.0 -3.0 conserved exported protein of unknown function compare
PP_2862 -1.0 -3.5 Undecaprenyl-diphosphatase compare
PP_4875 -1.0 -2.7 conserved membrane protein of unknown function compare
PP_2160 -1.0 -2.3 NADPH-dependent 7-cyano-7-deazaguanine reductase compare
PP_2144 -1.0 -2.3 Transcriptional regulator, TetR family compare
PP_5146 -1.0 -3.8 RNA pyrophosphohydrolase compare
PP_4940 -1.0 -4.9 Putative glycosyltransferase compare
PP_2302 -1.0 -3.0 DNA-binding, ATP-dependent protease compare
PP_4286 -1.0 -3.9 allantoinase compare
PP_5329 -1.0 -1.6 putative phosphate ABC transporter, periplasmic phosphate-binding protein compare
PP_3880 -1.0 -1.2 conserved exported protein of unknown function compare
PP_2103 -1.0 -2.8 conserved protein of unknown function compare
PP_4892 -1.0 -3.5 integral membrane ATP-dependent zinc metallopeptidase / HflK-HflC complex compare
PP_4722 -1.0 -2.9 Transcription elongation factor GreA compare
PP_5051 -1.0 -1.9 conserved protein of unknown function compare
PP_2371 -1.0 -2.8 Sulphite reductase hemoprotein, beta subunit compare
PP_3833 -1.0 -3.3 Response regulator compare
PP_5084 -1.0 -4.3 penicillin-insensitive transglycosylase/penicillin-sensitive transpeptidase compare
PP_5155 -1.0 -2.8 D-3-phosphoglycerate dehydrogenase / alpha-ketoglutarate reductase compare
PP_5028 -1.0 -2.1 proline iminopeptidase compare
PP_4362 -1.0 -1.7 conserved protein of unknown function compare
PP_1906 -1.0 -2.3 ribosomal large subunit pseudouridine synthase C compare
PP_4482 -0.9 -2.1 Transcriptional regulator, AraC family compare
PP_4792 -0.9 -1.8 conserved exported protein of unknown function compare
PP_1763 -0.9 -2.0 putative oxidoreductase compare
PP_1317 -0.9 -2.2 Ubiquinol-cytochrome c reductase iron-sulfur subunit compare
PP_4308 -0.9 -1.3 Transcriptional regulator, AsnC family compare
PP_4910 -0.9 -2.0 conserved protein of unknown function compare
PP_4215 -0.9 -2.5 pyoverdine biosynthesis related protein compare
PP_1804 -0.9 -4.8 Glycosyl transferase WbpL compare
PP_4944 -0.9 -2.3 Carbamoyltransferase compare
PP_5095 -0.9 -0.8 pyrroline-5-carboxylate reductase compare
PP_3603 -0.9 -2.9 Transcriptional regulator, GntR family compare
PP_0274 -0.9 -1.1 putative transcriptional regulator containing HTH domain compare
PP_0048 -0.9 -1.0 conserved protein of unknown function compare
PP_0547 -0.9 -2.7 UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl- meso-diaminopimelate ligase compare
PP_0888 -0.9 -0.9 Photosynthetic apparatus regulatory protein RegA compare
PP_3339 -0.9 -1.9 conserved exported protein of unknown function compare
PP_2299 -0.9 -1.6 Trigger factor compare
PP_2313 -0.9 -1.7 conserved membrane protein of unknown function compare
PP_4143 -0.9 -2.2 conserved protein of unknown function compare
PP_1025 -0.9 -4.1 2-isopropylmalate synthase compare
PP_t13 -0.9 -1.9 tRNA-Lys compare
PP_0123 -0.9 -4.6 DNA polymerase I, 5 compare


Specific Phenotypes

None in this experiment

For Pseudomonas putida KT2440 in soil experiments

For soil Soil=PNNL_Prosser_PlotA_B_20191220; Sterility=sterile; Collection=outgrowth_in_LB; SoilTreatment=none; SoilTreatmentTime=72_hrs across organisms