Experiment set24IT043 for Pseudomonas putida KT2440

Compare to:

Soil=PNNL_Prosser_PlotA_B_20191220; Sterility=sterile; Collection=outgrowth_in_LB; SoilTreatment=none; SoilTreatmentTime=72_hrs

200 most important genes:

  gene name fitness t score description  
PP_1623 -6.0 -11.1 RNA polymerase, sigma S (sigma 38) factor compare
PP_0164 -5.3 -5.2 conserved protein of unknown function compare
PP_4994 -5.1 -3.6 conserved protein of unknown function compare
PP_0760 -5.1 -4.9 conserved membrane protein of unknown function compare
PP_1898 -4.8 -3.3 MotA/TolQ/ExbB proton channel family protein compare
PP_4943 -4.6 -3.2 putative Glycosyl transferase compare
PP_0184 -3.9 -2.7 Argininosuccinate lyase compare
PP_5114 -3.8 -3.4 putative adenine methyltransferase compare
PP_4726 -3.8 -3.7 Chaperone protein DnaJ compare
PP_1088 -3.7 -9.0 Argininosuccinate synthase compare
PP_1734 -3.6 -3.5 Probable septum site-determining protein MinC compare
PP_1985 -3.5 -5.2 3-isopropylmalate dehydratase large subunit compare
PP_5185 -3.5 -5.9 acetylglutamate kinase-like protein (regulatory domain)/amino acid N-acetyltransferase compare
PP_3484 -3.5 -5.2 Response regulator receiver protein compare
PP_5289 -3.5 -3.4 Acetylglutamate kinase compare
PP_1198 -3.3 -4.5 transcriptional regulator, Cro/CI family (higA antitoxin like) compare
PP_4364 -3.3 -4.0 putative Anti-sigma F factor antagonist compare
PP_4058 -3.2 -10.9 1,4-alpha-glucan branching enzyme compare
PP_2402 -3.2 -2.2 putative Sensor histidine kinase compare
PP_0289 -3.1 -7.9 Imidazoleglycerol-phosphate dehydratase compare
PP_4909 -3.1 -6.0 phosphoserine phosphatase compare
PP_0966 -3.0 -10.0 Histidinol dehydrogenase compare
PP_1733 -2.9 -3.5 membrane ATPase of the MinC-MinD-MinE system compare
PP_1079 -2.9 -6.7 Ornithine carbamoyltransferase compare
PP_2145 -2.9 -3.5 beta-N-acetylglucosaminidase compare
PP_4098 -2.9 -2.8 UvrABC system protein C compare
PP_3580 -2.9 -2.7 conserved protein of unknown function compare
PP_0846 -2.8 -1.9 DnaK-like molecular chaperone specific for IscU compare
PP_1731 -2.8 -4.7 23S rRNA (746) and tRNA (32) pseudouridine synthase compare
PP_0965 -2.7 -7.9 ATP phosphoribosyltransferase (EC 2.4.2.17) (from data) compare
PP_0949 -2.7 -4.9 putative ATP-binding protein UPF0042 compare
PP_0293 -2.6 -1.9 Imidazole glycerol phosphate synthase subunit HisF compare
PP_4890 -2.5 -5.3 ATP phosphoribosyltransferase regulatory subunit compare
PP_5216 -2.5 -1.7 exopolyphosphatase compare
PP_5014 -2.4 -3.2 Phosphoribosyl-AMP cyclohydrolase compare
PP_3409 -2.3 -3.3 putative Cobalamin biosynthesis protein cobE compare
PP_0290 -2.3 -5.2 Imidazole glycerol phosphate synthase subunit HisH compare
PP_4008 -2.3 -6.7 ATP-dependent serine protease compare
PP_0888 -2.3 -2.3 Photosynthetic apparatus regulatory protein RegA compare
PP_4004 -2.3 -4.4 DNA translocase FtsK compare
PP_1493 -2.3 -3.8 chemotaxis response regulator protein-glutamate methylesterase of group 3 operon compare
PP_4696 -2.3 -4.3 Nitrogen regulation protein NR(I) compare
PP_5039 -2.2 -2.3 conserved protein of unknown function compare
PP_1176 -2.2 -1.4 conserved protein of unknown function compare
PP_3821 -2.2 -7.4 UTP-glucose-1-phosphate uridylyltransferase compare
PP_0967 -2.2 -6.2 histidinol-phosphate aminotransferase (EC 2.6.1.9) (from data) compare
PP_4342 -2.2 -3.0 flagellar synthesis regulator, putative ATPase compare
PP_3903 -2.2 -2.7 conserved protein of unknown function compare
PP_4993 -2.2 -4.6 Glutathione synthetase compare
PP_5310 -2.2 -6.1 junction-specific ATP-dependent DNA helicase compare
PP_0775 -2.1 -2.7 conserved protein of unknown function compare
PP_1208 -2.0 -1.7 conserved protein of unknown function, SlyX family compare
PP_3359 -2.0 -3.4 putative Hydroxycinnamic acid degradation regulator compare
PP_0872 -2.0 -6.1 Peptide chain release factor 3 compare
PP_3614 -2.0 -2.8 conserved membrane protein of unknown function compare
PP_0397 -2.0 -10.5 protein kinase compare
PP_1224 -2.0 -4.3 periplasmic subunit of the TolQRA transport system compare
PP_3511 -2.0 -4.8 Branched-chain-amino-acid aminotransferase compare
PP_4129 -2.0 -1.9 NADH:ubiquinone oxidoreductase, membrane subunit L compare
PP_4680 -1.9 -8.5 acetohydroxybutanoate synthase / acetolactate synthase compare
PP_1317 -1.9 -3.1 Ubiquinol-cytochrome c reductase iron-sulfur subunit compare
PP_4120 -1.9 -3.1 NADH-quinone oxidoreductase subunit B compare
PP_1216 -1.9 -2.2 Holliday junction ATP-dependent DNA helicase RuvA compare
PP_1097 -1.9 -1.8 Methionine--tRNA ligase compare
PP_5095 -1.8 -1.2 pyrroline-5-carboxylate reductase compare
PP_0001 -1.8 -1.7 probable chromosome-partitioning protein compare
PP_4131 -1.8 -3.8 NADH-quinone oxidoreductase subunit N compare
PP_0048 -1.8 -1.5 conserved protein of unknown function compare
PP_2409 -1.8 -3.0 cobalt-zinc-cadmium resistance protein compare
PP_1779 -1.8 -6.1 Lipopolysaccharide ABC export system, ATP-binding protein compare
PP_2328 -1.7 -3.3 Phosphoadenosine phosphosulfate reductase compare
PP_4678 -1.7 -8.2 Ketol-acid reductoisomerase compare
PP_2862 -1.7 -5.5 Undecaprenyl-diphosphatase compare
PP_4785 -1.7 -4.9 conserved exported protein of unknown function compare
PP_4964 -1.7 -2.3 D-erythrose 4-phosphate dehydrogenase compare
PP_1055 -1.7 -1.1 Type II secretion pathway protein GspN compare
PP_0504 -1.7 -4.5 Outer membrane protein OprG compare
PP_0292 -1.7 -2.6 1-(5-phosphoribosyl)-5-((5-phosphoribosylamino)methylideneamino)imidazole-4-carboxamide isomerase (EC 5.3.1.16) (from data) compare
PP_1036 -1.7 -7.3 membrane-bound lytic murein transglycosylase F compare
PP_1268 -1.7 -3.4 putative HtrA suppressor protein sohA compare
PP_2370 -1.7 -2.5 conserved protein of unknown function compare
PP_0396 -1.7 -7.7 conserved protein of unknown function compare
PP_3946 -1.6 -1.2 HTH-type transcriptional repressor NicR compare
PP_4880 -1.6 -6.5 exoribonuclease R compare
PP_3649 -1.6 -3.2 Transcriptional regulator, GntR family compare
PP_4379 -1.6 -3.1 Beta-ketoacyl-acyl-carrier-protein synthase I compare
PP_5217 -1.6 -8.6 Polyphosphate kinase compare
PP_1778 -1.6 -5.4 Lipopolysaccharide ABC export system, permease protein compare
PP_5015 -1.6 -3.1 phosphoribosyl-ATP pyrophosphatase (EC 3.6.1.31) (from data) compare
PP_5610 -1.6 -2.2 protein of unknown function compare
PP_4471 -1.6 -4.1 Magnesium transporter compare
PP_1217 -1.6 -3.9 Holliday junction ATP-dependent DNA helicase RuvB compare
PP_1025 -1.6 -7.9 2-isopropylmalate synthase compare
PP_3052 -1.6 -1.4 conserved protein of unknown function compare
PP_4126 -1.6 -1.0 NADH-quinone oxidoreductase subunit I compare
PP_0735 -1.5 -1.4 molybdopterin-synthase adenylyltransferase compare
PP_4936 -1.5 -5.8 O-antigen polymerase compare
PP_4124 -1.5 -2.7 NADH-quinone oxidoreductase subunit G compare
PP_1986 -1.5 -2.1 3-isopropylmalate dehydratase small subunit compare
PP_4937 -1.5 -3.3 toluene tolerance protein compare
PP_5475 -1.5 -1.7 conserved protein of unknown function compare
PP_4375 -1.5 -4.8 flagellar chaperone, inhibits premature FliC assembly compare
PP_5525 -1.5 -2.8 conserved exported protein of unknown function compare
PP_0395 -1.5 -8.0 putative type IV piliation protein compare
PP_5145 -1.5 -9.0 phosphoenolpyruvate-dependent regulator (with NPR and NTR proteins) compare
PP_3924 -1.5 -1.9 conserved protein of unknown function compare
PP_5327 -1.5 -2.4 putative phosphate ABC transporter, permease subunit compare
PP_1099 -1.4 -1.6 Cold shock protein CapB compare
PP_t29 -1.4 -1.7 tRNA-Ala compare
PP_5328 -1.4 -1.7 putative phosphate transport system permease protein compare
PP_2908 -1.4 -2.9 DNA-binding transcriptional repressor compare
PP_1214 -1.4 -2.5 putative transcriptional regulatory protein compare
PP_4679 -1.4 -4.0 acetohydroxybutanoate synthase / acetolactate synthase compare
PP_2168 -1.4 -4.9 Transaldolase compare
PP_2122 -1.4 -3.4 molybdenum cofactor biosynthesis protein B compare
PP_1988 -1.4 -3.5 3-isopropylmalate dehydrogenase compare
PP_4121 -1.4 -2.3 NADH-quinone oxidoreductase subunit C/D compare
PP_4337 -1.4 -4.0 chemotaxis response regulator protein-glutamate methylesterase of group 1 operon compare
PP_4130 -1.4 -2.2 NADH:ubiquinone oxidoreductase, membrane subunit M compare
PP_4804 -1.3 -1.3 RlpA-like lipoprotein compare
PP_2378 -1.3 -1.8 Fe/S biogenesis protein NfuA compare
PP_4892 -1.3 -3.8 integral membrane ATP-dependent zinc metallopeptidase / HflK-HflC complex compare
PP_4891 -1.3 -2.8 integral membrane ATP-dependent zinc metallopeptidase / HflK-HflC complex compare
PP_2433 -1.3 -2.7 conserved protein of unknown function compare
PP_4207 -1.3 -2.6 conserved protein of unknown function compare
PP_2665 -1.3 -3.8 Glycerol metabolism activator compare
PP_2820 -1.3 -1.4 HTH-type transcriptional regulator nfxB compare
PP_2302 -1.3 -3.8 DNA-binding, ATP-dependent protease compare
PP_0630 -1.3 -1.3 DNA gyrase inhibitor YacG compare
PP_3551 -1.3 -1.3 DNA-binding response regulator, LuxR family compare
PP_5706 -1.3 -1.7 Sec translocation complex - SecG subunit compare
PP_0007 -1.3 -2.2 conserved hypothetical protein compare
PP_0003 -1.3 -2.8 16S RNA methyltransferase compare
PP_2147 -1.3 -3.2 conserved exported protein of unknown function compare
PP_4204 -1.3 -2.9 antitoxin of the type II toxin-antitoxin MqsRA system and DNA-binding transcriptional repressor compare
PP_2029 -1.3 -1.6 von Willebrand factor type A domain protein compare
PP_1319 -1.2 -3.8 Ubiquinol--cytochrome c reductase, cytochrome c1 compare
PP_3999 -1.2 -4.6 Uroporphyrinogen-III C-methyltransferase/Precorrin-2 dehydrogenase/Sirohydrochlorin ferrochelatase compare
PP_1215 -1.2 -1.4 Crossover junction endodeoxyribonuclease RuvC compare
PP_4332 -1.2 -3.1 Chemotaxis protein CheW compare
PP_4917 -1.2 -2.4 3',5'-cyclic-nucleotide phosphodiesterase compare
PP_2429 -1.2 -1.6 putative Membrane protein compare
PP_5084 -1.2 -5.6 penicillin-insensitive transglycosylase/penicillin-sensitive transpeptidase compare
PP_2030 -1.2 -2.5 conserved protein of unknown function compare
PP_4215 -1.2 -3.7 pyoverdine biosynthesis related protein compare
PP_2181 -1.2 -2.3 Transcriptional regulator, Cro/CI family compare
PP_0914 -1.2 -5.1 GGDEF domain protein compare
PP_3073 -1.2 -2.8 3-hydroxybutyrate dehydrogenase compare
PP_1428 -1.2 -1.4 Sigma factor AlgU negative regulatory protein compare
PP_1729 -1.2 -1.6 conserved protein of unknown function compare
PP_4942 -1.2 -1.6 conserved protein of unknown function compare
PP_0738 -1.2 -3.1 conserved protein of unknown function compare
PP_5508 -1.2 -1.1 conserved protein of unknown function compare
PP_2390 -1.2 -4.2 Transcriptional regulator, LysR family compare
PP_0978 -1.2 -2.5 conserved protein of unknown function compare
PP_4902 -1.2 -1.8 Oligoribonuclease compare
PP_2773 -1.2 -1.6 conserved protein of unknown function compare
PP_5128 -1.2 -5.7 Dihydroxy-acid dehydratase compare
PP_4803 -1.2 -5.0 D-alanyl-D-alanine carboxypeptidase compare
PP_4341 -1.2 -4.1 RNA polymerase sigma 28 (sigma F) factor for class III flagellar operons compare
PP_4875 -1.2 -2.3 conserved membrane protein of unknown function compare
PP_4251 -1.2 -2.3 cytochrome c oxidase subunit, cbb3-type compare
PP_4358 -1.2 -4.5 flagellar synthesis, switching and energizing component compare
PP_0951 -1.2 -3.8 Ribosome hibernation promoting factor compare
PP_4940 -1.2 -4.6 Putative glycosyltransferase compare
PP_1344 -1.2 -1.6 conserved protein of unknown function compare
PP_2322 -1.2 -5.5 Major outer membrane lipoprotein compare
PP_5600 -1.1 -2.4 conserved protein of unknown function compare
PP_4910 -1.1 -2.4 conserved protein of unknown function compare
PP_3563 -1.1 -3.4 conserved exported protein of unknown function compare
PP_2475 -1.1 -2.9 Transcriptional regulator, TetR family compare
PP_4211 -1.1 -4.4 outer membrane pyoverdine efflux protein compare
PP_0435 -1.1 -4.9 Peptidase, M23/M37 family compare
PP_4895 -1.1 -1.3 tRNA dimethylallyltransferase compare
PP_0291 -1.1 -2.0 conserved protein of unknown function compare
PP_4684 -1.1 -3.9 conserved protein of unknown function with kinase-like domain compare
PP_2883 -1.1 -1.6 conserved protein of unknown function compare
PP_3603 -1.1 -3.6 Transcriptional regulator, GntR family compare
PP_2203 -1.1 -1.1 conserved protein of unknown function compare
PP_5110 -1.1 -1.8 cytokinetic ring ABC transporter-like subunit - ATP-binding subunit compare
PP_2160 -1.1 -2.7 NADPH-dependent 7-cyano-7-deazaguanine reductase compare
PP_1468 -1.1 -1.8 Tyrosine recombinase XerD compare
PP_0276 -1.1 -1.0 Transcriptional regulator, Cro/CI family compare
PP_4067 -1.1 -4.3 methylcrotonyl-CoA carboxylase biotin-containing subunit alpha compare
PP_2337 -1.1 -1.2 aconitate isomerase compare
PP_0980 -1.1 -2.9 Probable cytosol aminopeptidase compare
PP_3902 -1.1 -1.7 conserved protein of unknown function compare
PP_5621 -1.1 -1.3 protein of unknown function compare
PP_4262 -1.1 -2.0 Cytochrome oxidase maturation protein, cbb3-type compare
PP_0368 -1.1 -6.7 putative Acyl-CoA dehydrogenase compare
PP_5502 -1.0 -3.1 ribosome modulation factor compare
PP_1763 -1.0 -2.0 putative oxidoreductase compare
PP_0123 -1.0 -4.7 DNA polymerase I, 5 compare
PP_0406 -1.0 -1.4 Nucleotidyltransferase family protein compare
PP_4261 -1.0 -2.8 cation-transporting P-type ATPase compare
PP_0405 -1.0 -4.9 conserved protein of unknown function compare
PP_4938 -1.0 -4.7 putative Glycosyl transferase compare
PP_4378 -1.0 -6.7 flagellin, filament structural protein compare
PP_2220 -1.0 -2.7 C4-type zinc finger protein, DksA/TraR family compare
PP_0393 -1.0 -1.0 putative 2-amino-4-hydroxy-6-hydroxymethyldihydropteridine pyrophosphokinase compare


Specific Phenotypes

None in this experiment

For Pseudomonas putida KT2440 in soil experiments

For soil Soil=PNNL_Prosser_PlotA_B_20191220; Sterility=sterile; Collection=outgrowth_in_LB; SoilTreatment=none; SoilTreatmentTime=72_hrs across organisms