Experiment set24IT034 for Pseudomonas simiae WCS417

Compare to:

JP1 MOI 0.1

200 most important genes:

  gene name fitness t score description  
PS417_03930 -4.4 -7.3 thymidine phosphorylase compare
PS417_02210 -3.9 -6.0 diguanylate cyclase compare
PS417_17945 -3.7 -1.0 hypothetical protein compare
PS417_24275 -3.6 -17.8 diguanylate phosphodiesterase compare
PS417_19800 -3.5 -2.3 flagellar motor switch protein FliG compare
PS417_24705 -3.4 -1.8 D-alanyl-D-alanine carboxypeptidase compare
PS417_05985 -3.4 -1.7 chemotaxis protein CheY compare
PS417_08220 -3.3 -0.9 epimerase compare
PS417_00755 -3.2 -0.9 biofilm PGA synthesis protein PgaD compare
PS417_17610 -3.0 -1.4 AsnC family transcriptional regulator compare
PS417_02555 -3.0 -13.3 exoribonuclease R compare
PS417_19635 -3.0 -9.0 lipid kinase compare
PS417_09235 -2.9 -1.1 molecular chaperone compare
PS417_06845 -2.9 -1.5 lipoprotein compare
PS417_19625 -2.8 -3.4 histidine kinase compare
PS417_20585 -2.7 -6.2 chemotaxis protein compare
PS417_05160 -2.6 -1.0 DNA polymerase III subunit chi compare
PS417_23580 -2.6 -0.9 peptidylprolyl isomerase compare
PS417_02560 -2.5 -1.3 23S rRNA methyltransferase compare
PS417_08245 -2.5 -0.9 CDP-6-deoxy-L-threo-D-glycero-4-hexulose-3- dehydrase reductase compare
PS417_18885 -2.4 -2.5 GntR family transcriptional regulator compare
PS417_23950 -2.4 -1.1 polynucleotide phosphorylase/polyadenylase compare
PS417_14315 -2.3 -2.8 2,5-dioxovalerate dehydrogenase compare
PS417_24460 -2.3 -2.4 hypothetical protein compare
PS417_08230 -2.3 -1.3 lipopolysaccharide biosynthesis protein RfbH compare
PS417_03465 -2.3 -1.2 type III secretion protein compare
PS417_15915 -2.3 -1.4 hypothetical protein compare
PS417_05820 -2.2 -1.8 recombinase RecX compare
PS417_02845 -2.2 -2.4 ABC transporter permease compare
PS417_09440 -2.2 -2.0 MerR family transcriptional regulator compare
PS417_26530 -2.2 -1.3 hypothetical protein compare
PS417_27585 -2.2 -0.9 diaminopimelate epimerase compare
PS417_00370 -2.2 -0.8 hypothetical protein compare
PS417_21695 -2.1 -2.3 succinylglutamate-semialdehyde dehydrogenase compare
PS417_01115 -2.1 -1.8 serine acetyltransferase compare
PS417_16195 -2.1 -1.0 AraC family transcriptional regulator compare
PS417_03380 -2.1 -1.1 hypothetical protein compare
PS417_09695 -2.1 -2.1 hydrolase compare
PS417_24835 -2.0 -2.3 hypothetical protein compare
PS417_27795 -1.9 -0.5 orotate phosphoribosyltransferase compare
PS417_26685 -1.9 -2.5 hypothetical protein compare
PS417_20340 -1.8 -1.3 hypothetical protein compare
PS417_19805 -1.8 -3.1 flagellar M-ring protein FliF compare
PS417_10995 -1.7 -2.5 GntR family transcriptional regulator compare
PS417_04365 -1.7 -0.6 3-deoxy-D-manno-octulosonate 8-phosphate phosphatase compare
PS417_11535 -1.7 -2.5 nicotinate phosphoribosyltransferase compare
PS417_28315 -1.7 -2.4 zinc ABC transporter permease compare
PS417_02695 -1.7 -1.4 protein hupE compare
PS417_21655 -1.7 -0.9 aspartate kinase compare
PS417_15770 -1.7 -1.0 pyridoxine 5'-phosphate oxidase compare
PS417_23995 -1.6 -0.7 preprotein translocase subunit SecG compare
PS417_23015 -1.6 -1.5 NGG1p interacting factor 3 protein, NIF3 compare
PS417_06375 -1.6 -0.4 deoxycytidine triphosphate deaminase compare
PS417_22085 -1.6 -1.9 aldehyde dehydrogenase compare
PS417_05555 -1.6 -2.0 amino acid ABC transporter permease compare
PS417_17795 -1.6 -1.5 ABC transporter permease compare
PS417_14755 -1.6 -1.6 UV damage repair endonuclease UvdE compare
PS417_07305 -1.6 -1.1 3-beta hydroxysteroid dehydrogenase compare
PS417_23545 -1.5 -1.1 gamma-glutamyl kinase compare
PS417_12035 -1.5 -2.0 dihydroxyacetone kinase compare
PS417_23900 -1.5 -4.3 poly(A) polymerase compare
PS417_15745 -1.5 -1.5 lipid carrier protein compare
PS417_26985 -1.5 -3.2 phosphoenolpyruvate-protein phosphotransferase compare
PS417_10675 -1.5 -0.7 TetR family transcriptional regulator compare
PS417_20650 -1.5 -4.1 hypothetical protein compare
PS417_22205 -1.5 -5.3 potassium transporter TrkH compare
PS417_13010 -1.5 -1.3 alpha/beta hydrolase compare
PS417_02225 -1.5 -1.6 bifunctional glutamine-synthetase adenylyltransferase/deadenyltransferase compare
PS417_22565 -1.5 -0.4 formyltetrahydrofolate deformylase compare
PS417_22250 -1.5 -4.1 pseudouridine synthase compare
PS417_08190 -1.5 -7.2 membrane protein compare
PS417_08135 -1.5 -2.5 3-phosphoshikimate 1-carboxyvinyltransferase compare
PS417_21400 -1.4 -4.0 TetR family transcriptional regulator compare
PS417_23715 -1.4 -2.0 cupin compare
PS417_18310 -1.4 -0.6 hypothetical protein compare
PS417_15135 -1.4 -0.8 hypothetical protein compare
PS417_11175 -1.4 -1.6 AraC family transcriptional regulator compare
PS417_07095 -1.4 -4.3 histidine kinase compare
PS417_04650 -1.4 -0.5 D-alanine--D-alanine ligase compare
PS417_27715 -1.4 -3.0 Fe-S oxidoreductase compare
PS417_20635 -1.4 -0.8 ABC transporter ATP-binding protein compare
PS417_09615 -1.4 -2.7 glycosyl transferase family 1 compare
PS417_08185 -1.4 -2.7 glycosyl transferase compare
PS417_19955 -1.4 -0.9 hypothetical protein compare
PS417_01715 -1.3 -1.0 hypothetical protein compare
PS417_15090 -1.3 -1.2 hypothetical protein compare
PS417_19615 -1.3 -3.2 chemotaxis protein CheW compare
PS417_21855 -1.3 -1.8 hypothetical protein compare
PS417_23820 -1.3 -2.9 hypothetical protein compare
PS417_17645 -1.3 -1.1 RND transporter compare
PS417_16720 -1.3 -0.8 membrane protein compare
PS417_12260 -1.3 -2.5 hypothetical protein compare
PS417_25780 -1.3 -2.1 molecular chaperone DnaJ compare
PS417_13165 -1.3 -1.3 peroxidase compare
PS417_02280 -1.3 -0.9 GlcNAc-PI de-N-acetylase compare
PS417_20645 -1.3 -5.3 membrane protein compare
PS417_27245 -1.3 -1.9 aminotransferase DegT compare
PS417_18545 -1.3 -1.3 cell division protein compare
PS417_02815 -1.2 -2.7 urea ABC transporter ATP-binding protein compare
PS417_27665 -1.2 -1.8 diguanylate cyclase compare
PS417_02365 -1.2 -2.5 hypothetical protein compare
PS417_13245 -1.2 -1.9 saccharopine dehydrogenase compare
PS417_27195 -1.2 -0.5 N-acetylglutamate synthase compare
PS417_00705 -1.2 -1.4 MarR family transcriptional regulator compare
PS417_27865 -1.2 -2.1 LysR family transcriptional regulator compare
PS417_06620 -1.2 -1.2 hypothetical protein compare
PS417_19610 -1.2 -1.4 molybdenum cofactor sulfurase compare
PS417_12565 -1.2 -1.2 2-dehydro-3-deoxygluconokinase compare
PS417_22215 -1.2 -3.5 membrane protein compare
PS417_27475 -1.2 -1.3 membrane protein compare
PS417_17490 -1.2 -1.4 ABC transporter ATP-binding protein compare
PS417_09470 -1.2 -0.7 hypothetical protein compare
PS417_15400 -1.2 -1.3 hypothetical protein compare
PS417_07470 -1.2 -0.7 hypothetical protein compare
PS417_22050 -1.2 -2.7 ribonuclease BN compare
PS417_07120 -1.2 -2.2 RNA polymerase sigma-H factor compare
PS417_00630 -1.2 -2.2 nitrate ABC transporter substrate-binding protein compare
PS417_02805 -1.2 -1.1 urease subunit gamma compare
PS417_00625 -1.2 -2.1 taurine dioxygenase compare
PS417_06675 -1.2 -1.5 ATP-dependent helicase compare
PS417_19195 -1.2 -2.1 hypothetical protein compare
PS417_06710 -1.1 -0.7 beta-ketoadipyl CoA thiolase compare
PS417_02100 -1.1 -3.5 membrane protein compare
PS417_28030 -1.1 -1.9 hypothetical protein compare
PS417_27135 -1.1 -0.4 glutamine synthetase compare
PS417_08590 -1.1 -1.2 hypothetical protein compare
PS417_15110 -1.1 -3.9 protein BatD compare
PS417_08685 -1.1 -0.9 flagellar hook-length control protein FliK compare
PS417_02165 -1.1 -2.4 ZapA compare
PS417_07865 -1.1 -1.3 hypothetical protein compare
PS417_12535 -1.1 -1.3 nitrilase compare
PS417_12135 -1.1 -1.5 peptidylprolyl isomerase compare
PS417_14940 -1.1 -0.8 LysR family transcriptional regulator compare
PS417_03560 -1.1 -0.6 GTP-binding protein compare
PS417_00080 -1.1 -3.4 potassium transporter peripheral membrane component compare
PS417_22350 -1.1 -1.2 Fis family transcriptional regulator compare
PS417_09605 -1.1 -1.1 glycosyl transferase compare
PS417_03495 -1.1 -1.3 type III secretory protein EscS compare
PS417_27290 -1.1 -0.9 hypothetical protein compare
PS417_10985 -1.1 -0.7 NADH:flavin oxidoreductase compare
PS417_02675 -1.1 -2.2 ABC transporter ATP-binding protein compare
PS417_20665 -1.1 -3.0 hypothetical protein compare
PS417_01965 -1.0 -0.9 fimbriae biosynthesis protein compare
PS417_01510 -1.0 -1.3 hypothetical protein compare
PS417_17125 -1.0 -1.2 transcriptional regulator compare
PS417_17930 -1.0 -1.6 aldehyde dehydrogenase compare
PS417_06030 -1.0 -2.7 hypothetical protein compare
PS417_19360 -1.0 -1.9 hypothetical protein compare
PS417_15200 -1.0 -1.4 protein activator of alkane oxidation PraB compare
PS417_28225 -1.0 -0.8 hypothetical protein compare
PS417_17415 -1.0 -2.8 histidine kinase compare
PS417_14655 -1.0 -0.6 lysine transporter LysE compare
PS417_19970 -1.0 -3.3 recombinase RmuC compare
PS417_13620 -1.0 -1.0 thermostable hemolysin compare
PS417_01375 -1.0 -1.6 hypothetical protein compare
PS417_01780 -1.0 -2.7 proline iminopeptidase compare
PS417_02045 -1.0 -1.8 3-oxoacyl-ACP synthase compare
PS417_03725 -1.0 -2.2 acyltransferase compare
PS417_06685 -1.0 -0.4 beta-ketoadipyl CoA thiolase compare
PS417_09335 -1.0 -0.9 HAD family hydrolase compare
PS417_10120 -1.0 -2.5 hypothetical protein compare
PS417_13990 -1.0 -1.5 LysR family transcriptional regulator compare
PS417_11770 -1.0 -1.0 pyruvate dehydrogenase compare
PS417_15590 -1.0 -1.2 hypothetical protein compare
PS417_13075 -1.0 -1.0 hypothetical protein compare
PS417_24135 -1.0 -1.2 hypothetical protein compare
PS417_17010 -1.0 -3.9 AMP-binding protein compare
PS417_05695 -1.0 -2.9 transcriptional regulator compare
PS417_00075 -1.0 -1.7 hypothetical protein compare
PS417_00550 -1.0 -0.6 hypothetical protein compare
PS417_02040 -1.0 -1.1 3-hydroxylacyl-ACP dehydratase compare
PS417_09245 -1.0 -0.8 recombinase RdgC compare
PS417_19620 -0.9 -0.8 hypothetical protein compare
PS417_24510 -0.9 -2.0 AsnC family transcriptional regulator compare
PS417_00065 -0.9 -0.8 3-methyladenine DNA glycosylase compare
PS417_03730 -0.9 -2.6 phosphate acetyltransferase compare
PS417_11730 -0.9 -2.7 PvdJ/PvdD/PvdP-like protein compare
PS417_01260 -0.9 -4.0 hypothetical protein compare
PS417_05560 -0.9 -1.2 ABC transporter compare
PS417_19430 -0.9 -1.5 ureidoglycolate hydrolase compare
PS417_22450 -0.9 -0.4 ATP-dependent DNA helicase RuvA compare
PS417_04840 -0.9 -3.9 glycosyl transferase compare
PS417_14880 -0.9 -1.4 thioesterase compare
PS417_21830 -0.9 -1.9 TetR family transcriptional regulator compare
PS417_23505 -0.9 -1.7 cell division protein DedD compare
PS417_23205 -0.9 -2.5 transcriptional regulator compare
PS417_03705 -0.9 -2.1 2-alkenal reductase compare
PS417_11415 -0.9 -2.2 hypothetical protein compare
PS417_06880 -0.9 -2.4 RNA polymerase sigma factor compare
PS417_14355 -0.9 -2.8 sugar dehydrogenase compare
PS417_28515 -0.9 -1.4 16S rRNA methyltransferase compare
PS417_13205 -0.9 -0.9 isochorismate-pyruvate lyase compare
PS417_06970 -0.9 -1.6 LysR family transcriptional regulator compare
PS417_27485 -0.9 -2.1 hypothetical protein compare
PS417_14835 -0.9 -2.3 amidase compare
PS417_07640 -0.9 -1.7 glyceraldehyde-3-phosphate dehydrogenase compare
PS417_18930 -0.9 -0.9 restriction endonuclease subunit S compare
PS417_02670 -0.9 -1.1 ABC transporter compare
PS417_09625 -0.9 -1.3 sugar ABC transporter substrate-binding protein compare
PS417_15780 -0.9 -1.1 membrane protein compare


Specific Phenotypes

For 4 genes in this experiment

For phage JP1 MOI 0.1 in Pseudomonas simiae WCS417

For phage JP1 MOI 0.1 across organisms