Experiment set24IT034 for Pseudomonas putida KT2440

Compare to:

Soil=PNNL_Prosser_PlotA_B_20191220; Sterility=nonsterile; Collection=outgrowth_in_LB_2hrs_then_extra_outgrowth_in_LB; SoilTreatment=coldshock; SoilTreatmentTime=0_hrs

200 most important genes:

  gene name fitness t score description  
PP_0164 -6.1 -4.2 conserved protein of unknown function compare
PP_4370 -3.7 -4.6 Flagellar hook-basal body complex protein FliE compare
PP_2414 -3.5 -2.9 conserved exported protein of unknown function compare
PP_1734 -3.3 -6.4 Probable septum site-determining protein MinC compare
PP_0218 -3.3 -11.4 Sensory box protein compare
PP_0846 -3.3 -2.0 DnaK-like molecular chaperone specific for IscU compare
PP_1733 -3.1 -4.8 membrane ATPase of the MinC-MinD-MinE system compare
PP_4122 -3.0 -2.0 proton-pumping NADH:ubiquinone oxidoreductase, respiratory complex I, subunit E compare
PP_5185 -2.7 -6.6 acetylglutamate kinase-like protein (regulatory domain)/amino acid N-acetyltransferase compare
PP_4358 -2.7 -10.1 flagellar synthesis, switching and energizing component compare
PP_4004 -2.7 -4.9 DNA translocase FtsK compare
PP_5289 -2.6 -3.9 Acetylglutamate kinase compare
PP_4369 -2.6 -7.2 Flagellar M-ring protein compare
PP_4394 -2.5 -7.2 flagella basal body P-ring formation protein compare
PP_1528 -2.5 -1.6 conserved protein of unknown function compare
PP_4941 -2.3 -7.9 conserved exported protein of unknown function compare
PP_5328 -2.1 -2.1 putative phosphate transport system permease protein compare
PP_5095 -2.1 -1.4 pyrroline-5-carboxylate reductase compare
PP_1317 -2.1 -4.2 Ubiquinol-cytochrome c reductase iron-sulfur subunit compare
PP_1214 -2.1 -3.1 putative transcriptional regulatory protein compare
PP_4379 -2.0 -3.7 Beta-ketoacyl-acyl-carrier-protein synthase I compare
PP_4344 -2.0 -10.5 flagellar export pore protein compare
PP_2903 -2.0 -2.2 peptidyl-prolyl cis-trans isomerase B (rotamase B) compare
PP_5338 -2.0 -4.1 aspartate ammonia-lyase compare
PP_5327 -1.9 -3.9 putative phosphate ABC transporter, permease subunit compare
PP_4396 -1.9 -3.2 conserved protein of unknown function compare
PP_4365 -1.9 -7.3 Flagellar protein FliJ compare
PP_4383 -1.9 -4.3 Flagellar P-ring protein compare
PP_4381 -1.9 -11.6 Flagellar hook-associated protein FlgK compare
PP_4366 -1.9 -11.1 flagellum-specific ATP synthase compare
PP_4804 -1.8 -2.1 RlpA-like lipoprotein compare
PP_4384 -1.8 -9.9 Flagellar L-ring protein compare
PP_4943 -1.8 -2.3 putative Glycosyl transferase compare
PP_4262 -1.8 -3.7 Cytochrome oxidase maturation protein, cbb3-type compare
PP_4356 -1.8 -2.5 Flagellar protein FliO compare
PP_4098 -1.8 -3.1 UvrABC system protein C compare
PP_5230 -1.8 -4.0 Tyrosine recombinase XerC compare
PP_4368 -1.8 -5.2 flagellar motor switch protein compare
PP_4353 -1.8 -6.9 Flagellar biosynthetic protein fliR compare
PP_4332 -1.7 -4.5 Chemotaxis protein CheW compare
PP_4352 -1.7 -8.8 flagellin export apparatus, substrate specificity protein compare
PP_4700 -1.7 -1.9 pantothenate synthetase compare
PP_4129 -1.7 -2.9 NADH:ubiquinone oxidoreductase, membrane subunit L compare
PP_1493 -1.6 -1.9 chemotaxis response regulator protein-glutamate methylesterase of group 3 operon compare
PP_4380 -1.6 -10.5 Flagellar hook-associated protein FlgL compare
PP_4389 -1.6 -5.5 Flagellar basal-body rod modification protein FlgD compare
PP_4375 -1.6 -6.9 flagellar chaperone, inhibits premature FliC assembly compare
PP_5014 -1.5 -2.6 Phosphoribosyl-AMP cyclohydrolase compare
PP_t10 -1.5 -2.5 tRNA-Pro compare
PP_0630 -1.5 -1.7 DNA gyrase inhibitor YacG compare
PP_1088 -1.5 -7.2 Argininosuccinate synthase compare
PP_5279 -1.5 -2.9 conserved protein of unknown function compare
PP_4131 -1.5 -4.3 NADH-quinone oxidoreductase subunit N compare
PP_5022 -1.5 -1.9 Glutamine transport ATP-binding protein GlnQ compare
PP_4341 -1.5 -7.5 RNA polymerase sigma 28 (sigma F) factor for class III flagellar operons compare
PP_2302 -1.4 -4.2 DNA-binding, ATP-dependent protease compare
PP_4120 -1.4 -3.0 NADH-quinone oxidoreductase subunit B compare
PP_4361 -1.4 -5.0 Flagellar hook-length control protein FliK compare
PP_4378 -1.4 -9.5 flagellin, filament structural protein compare
PP_1994 -1.4 -2.1 tRNA pseudouridine (38-40)synthase compare
PP_4337 -1.4 -4.8 chemotaxis response regulator protein-glutamate methylesterase of group 1 operon compare
PP_4376 -1.4 -8.0 flagellar filament capping protein compare
PP_0393 -1.4 -0.9 putative 2-amino-4-hydroxy-6-hydroxymethyldihydropteridine pyrophosphokinase compare
PP_0406 -1.4 -2.3 Nucleotidyltransferase family protein compare
PP_0789 -1.4 -4.3 N-acetyl-anhydromuramyl-L-alanine-amidase compare
PP_2720 -1.4 -1.6 conserved protein of unknown function compare
PP_0290 -1.3 -5.4 Imidazole glycerol phosphate synthase subunit HisH compare
PP_4382 -1.3 -7.4 Peptidoglycan hydrolase FlgJ compare
PP_1898 -1.3 -3.4 MotA/TolQ/ExbB proton channel family protein compare
PP_4338 -1.3 -5.9 Chemotaxis histidine kinase CheA compare
PP_4942 -1.3 -3.1 conserved protein of unknown function compare
PP_4367 -1.3 -4.2 Flagellar assembly protein FliH compare
PP_4058 -1.3 -6.9 1,4-alpha-glucan branching enzyme compare
PP_0914 -1.3 -7.1 GGDEF domain protein compare
PP_4388 -1.3 -7.9 Flagellar hook protein FlgE compare
PP_4726 -1.2 -2.8 Chaperone protein DnaJ compare
PP_0184 -1.2 -4.1 Argininosuccinate lyase compare
PP_4944 -1.2 -2.9 Carbamoyltransferase compare
PP_4385 -1.2 -3.9 flagellar basal-body rod protein FlgG compare
PP_5654 -1.2 -2.2 putative phosphotriesterase compare
PP_4895 -1.2 -2.1 tRNA dimethylallyltransferase compare
PP_0276 -1.2 -1.3 Transcriptional regulator, Cro/CI family compare
PP_0065 -1.2 -2.7 NAD-binding component of TrK potassium transporter compare
PP_4392 -1.2 -6.3 chemotaxis protein methyltransferase compare
PP_4824 -1.2 -5.0 Sensor histidine kinase/response regulator compare
PP_4811 -1.2 -3.3 Gamma-glutamyl phosphate reductase compare
PP_4696 -1.2 -3.4 Nitrogen regulation protein NR(I) compare
PP_0888 -1.1 -1.9 Photosynthetic apparatus regulatory protein RegA compare
PP_4902 -1.1 -1.3 Oligoribonuclease compare
PP_5028 -1.1 -2.6 proline iminopeptidase compare
PP_4334 -1.1 -5.7 ParA family protein compare
PP_4340 -1.1 -1.8 response regulator for chemotactic signal transduction compare
PP_1318 -1.1 -4.6 Cytochrome b compare
PP_2402 -1.1 -2.2 putative Sensor histidine kinase compare
PP_0677 -1.1 -2.0 putative Lipoprotein compare
PP_4121 -1.1 -2.9 NADH-quinone oxidoreductase subunit C/D compare
PP_5748 -1.1 -1.6 cytochrome c heme lyase subunit compare
PP_4471 -1.1 -2.8 Magnesium transporter compare
PP_4264 -1.1 -5.4 oxygen-independent coproporphyrinogen III dehydrogenase compare
PP_4391 -1.0 -4.1 flagellar basal-body rod protein FlgB compare
PP_0435 -1.0 -4.8 Peptidase, M23/M37 family compare
PP_5337 -1.0 -2.9 LysR family transcriptional regulator compare
PP_4354 -1.0 -1.8 flagellar export apparatus subunit compare
PP_4253 -1.0 -2.7 cytochrome c oxidase subunit, cbb3-type compare
PP_4470 -1.0 -3.9 putative transcriptional regulator (Arc domain-containing) compare
PP_1410 -1.0 -1.3 conserved protein of unknown function compare
PP_4879 -1.0 -2.6 23S rRNA (guanosine-2'-O-)-methyltransferase RlmB compare
PP_4386 -1.0 -5.3 flagellar basal-body rod protein FlgF compare
PP_5045 -1.0 -2.5 tRNA sulfurtransferase compare
PP_5090 -1.0 -2.0 putative cell division protein compare
PP_1232 -1.0 -6.3 conserved exported protein of unknown function compare
PP_1216 -1.0 -2.0 Holliday junction ATP-dependent DNA helicase RuvA compare
PP_1598 -1.0 -3.1 regulatory intramembrane protein RIP zinc protease compare
PP_0401 -1.0 -1.6 Ribosomal RNA small subunit methyltransferase A compare
PP_4546 -1.0 -2.5 ATP-dependent helicase HrpA compare
PP_1055 -1.0 -1.5 Type II secretion pathway protein GspN compare
PP_5198 -1.0 -1.4 conserved protein of unknown function compare
PP_4273 -1.0 -1.4 Transcriptional regulator, MerR family compare
PP_1319 -1.0 -3.7 Ubiquinol--cytochrome c reductase, cytochrome c1 compare
PP_4333 -1.0 -4.3 CheW domain protein compare
PP_5483 -1.0 -1.8 conserved protein of unknown function compare
PP_5644 -0.9 -1.7 conserved membrane protein of unknown function compare
PP_4359 -0.9 -3.1 Flagellar protein FliL compare
PP_1366 -0.9 -0.9 Transcriptional regulator MvaT, P16 subunit compare
PP_2336 -0.9 -1.7 aconitate hydratase 1 compare
PP_1912 -0.9 -2.8 Phosphate acyltransferase compare
PP_1215 -0.9 -1.1 Crossover junction endodeoxyribonuclease RuvC compare
PP_5100 -0.9 -2.6 dITP/XTP pyrophosphatase compare
PP_4720 -0.9 -1.5 putative RNA binding protein compare
PP_3999 -0.9 -4.7 Uroporphyrinogen-III C-methyltransferase/Precorrin-2 dehydrogenase/Sirohydrochlorin ferrochelatase compare
PP_3409 -0.9 -2.6 putative Cobalamin biosynthesis protein cobE compare
PP_4993 -0.9 -2.5 Glutathione synthetase compare
PP_4364 -0.9 -2.8 putative Anti-sigma F factor antagonist compare
PP_1629 -0.9 -3.3 Protein RecA compare
PP_3903 -0.9 -1.9 conserved protein of unknown function compare
PP_1000 -0.9 -2.4 ornithine carbamoyltransferase, catabolic compare
PP_0289 -0.9 -3.8 Imidazoleglycerol-phosphate dehydratase compare
PP_4917 -0.9 -2.1 3',5'-cyclic-nucleotide phosphodiesterase compare
PP_0313 -0.9 -1.3 putative electron transfer flavoprotein beta subunit compare
PP_3908 -0.9 -2.2 conserved protein of unknown function compare
PP_1087 -0.9 -4.1 Outer membrane protein, OmpA family compare
PP_4880 -0.8 -4.5 exoribonuclease R compare
PP_5329 -0.8 -1.2 putative phosphate ABC transporter, periplasmic phosphate-binding protein compare
PP_4390 -0.8 -3.2 flagellar basal-body rod protein FlgC compare
PP_4130 -0.8 -2.5 NADH:ubiquinone oxidoreductase, membrane subunit M compare
PP_3247 -0.8 -3.2 Transporter, bile acid/Na+ symporter family compare
PP_4556 -0.8 -2.4 conserved protein of unknown function compare
PP_4961 -0.8 -1.5 putative Lipoprotein compare
PP_4263 -0.8 -1.6 putative membrane-bounded cytochrome biogenesis cycZ-like domain, copper tolerance protein compare
PP_5309 -0.8 -3.0 oxidative and nitrosative stress transcriptional dual regulator compare
PP_4814 -0.8 -1.3 ATP-dependent protease La domain protein compare
PP_2858 -0.8 -1.7 conserved exported protein of unknown function compare
PP_4994 -0.8 -3.1 conserved protein of unknown function compare
PP_1268 -0.8 -2.1 putative HtrA suppressor protein sohA compare
PP_1074 -0.8 -3.2 DNA-binding transcriptional repressor - GlpR-glycerol-3-phosphate compare
PP_1979 -0.8 -1.4 putative Hydrolase compare
PP_2765 -0.8 -1.7 putative Sulfonate monooxygenase MsuD compare
PP_1233 -0.8 -2.5 sulfurtransferase compare
PP_3614 -0.8 -2.0 conserved membrane protein of unknown function compare
PP_1062 -0.8 -2.5 MutT/nudix family protein compare
PP_0614 -0.8 -3.2 putative N-carbamoyl-beta-alanine amidohydrolase/allantoine amidohydrolase 1 compare
PP_0040 -0.8 -1.7 hypothetical protein compare
PP_5317 -0.8 -1.6 Probable chorismate pyruvate-lyase compare
PP_1269 -0.8 -0.7 Universal stress protein family compare
PP_2510 -0.8 -1.5 conserved protein of unknown function compare
PP_1217 -0.8 -2.0 Holliday junction ATP-dependent DNA helicase RuvB compare
PP_2144 -0.8 -2.1 Transcriptional regulator, TetR family compare
PP_3773 -0.8 -1.8 conserved protein of unknown function compare
PP_3938 -0.7 -1.1 conserved protein of unknown function compare
PP_5701 -0.7 -1.7 conserved protein of unknown function compare
PP_4124 -0.7 -2.3 NADH-quinone oxidoreductase subunit G compare
PP_5475 -0.7 -0.9 conserved protein of unknown function compare
PP_1355 -0.7 -4.3 Muropeptide permease AmpG compare
PP_1999 -0.7 -1.3 membrane protein required for colicin V production compare
PP_4250 -0.7 -3.5 cytochrome c oxidase subunit I, cbb3-type compare
PP_1864 -0.7 -2.0 conserved protein of unknown function compare
PP_4739 -0.7 -2.2 conserved protein of unknown function compare
PP_5582 -0.7 -1.0 conserved protein of unknown function compare
PP_5350 -0.7 -1.9 Transcriptional regulator, RpiR family compare
PP_1764 -0.7 -1.3 Phosphoglycolate phosphatase 2 compare
PP_4286 -0.7 -2.8 allantoinase compare
PP_1763 -0.7 -1.5 putative oxidoreductase compare
PP_3861 -0.7 -2.6 Phage FluMu protein gp46 compare
PP_0117 -0.7 -2.8 Zn(2+) ABC transporter - permease subunit compare
PP_0610 -0.7 -1.7 conserved exported protein of unknown function compare
PP_3000 -0.7 -3.0 MaoC domain protein compare
PP_1646 -0.7 -3.4 putative Thioredoxin compare
PP_2160 -0.7 -2.5 NADPH-dependent 7-cyano-7-deazaguanine reductase compare
PP_1826 -0.7 -1.3 Hydrolase, isochorismatase family compare
PP_0125 -0.7 -1.6 putative cytochrome c-type protein compare
PP_2433 -0.7 -1.8 conserved protein of unknown function compare
PP_4891 -0.7 -2.0 integral membrane ATP-dependent zinc metallopeptidase / HflK-HflC complex compare
PP_0504 -0.7 -3.1 Outer membrane protein OprG compare
PP_0850 -0.7 -3.4 Dual-specificity RNA methyltransferase RlmN compare
PP_3243 -0.7 -2.5 Acetyltransferase, GNAT family compare
PP_4261 -0.7 -1.8 cation-transporting P-type ATPase compare
PP_0346 -0.7 -3.9 putative Heptose kinase WapQ compare
PP_0194 -0.7 -2.2 Transcriptional regulatory protein AlgP compare
PP_1362 -0.7 -1.6 pyruvate kinase II compare
PP_2299 -0.7 -2.2 Trigger factor compare


Specific Phenotypes

None in this experiment

For Pseudomonas putida KT2440 in soil experiments

For soil Soil=PNNL_Prosser_PlotA_B_20191220; Sterility=nonsterile; Collection=outgrowth_in_LB_2hrs_then_extra_outgrowth_in_LB; SoilTreatment=coldshock; SoilTreatmentTime=0_hrs across organisms