Experiment set24IT033 for Pseudomonas putida KT2440

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Soil=PNNL_Prosser_PlotA_B_20191220; Sterility=sterile; Collection=outgrowth_in_LB_2hrs_then_extra_outgrowth_in_LB; SoilTreatment=coldshock; SoilTreatmentTime=0_hrs

200 most important genes:

  gene name fitness t score description  
PP_0164 -6.0 -4.1 conserved protein of unknown function compare
PP_4004 -3.7 -7.3 DNA translocase FtsK compare
PP_0846 -3.2 -1.9 DnaK-like molecular chaperone specific for IscU compare
PP_1734 -3.1 -6.2 Probable septum site-determining protein MinC compare
PP_5289 -2.8 -4.6 Acetylglutamate kinase compare
PP_4943 -2.7 -3.6 putative Glycosyl transferase compare
PP_5309 -2.6 -8.7 oxidative and nitrosative stress transcriptional dual regulator compare
PP_5093 -2.6 -2.2 twitching motility protein compare
PP_0218 -2.5 -8.5 Sensory box protein compare
PP_4369 -2.4 -12.3 Flagellar M-ring protein compare
PP_0760 -2.3 -3.8 conserved membrane protein of unknown function compare
PP_1493 -2.3 -3.2 chemotaxis response regulator protein-glutamate methylesterase of group 3 operon compare
PP_4379 -2.1 -3.5 Beta-ketoacyl-acyl-carrier-protein synthase I compare
PP_4701 -2.1 -1.4 glucose-6-phosphate isomerase compare
PP_4136 -2.0 -2.0 Transcriptional regulator, LuxR family compare
PP_1215 -2.0 -3.1 Crossover junction endodeoxyribonuclease RuvC compare
PP_4368 -2.0 -7.5 flagellar motor switch protein compare
PP_4941 -2.0 -7.1 conserved exported protein of unknown function compare
PP_4902 -2.0 -3.6 Oligoribonuclease compare
PP_4356 -2.0 -1.8 Flagellar protein FliO compare
PP_5095 -1.9 -1.3 pyrroline-5-carboxylate reductase compare
PP_5014 -1.9 -3.2 Phosphoribosyl-AMP cyclohydrolase compare
PP_4370 -1.9 -4.1 Flagellar hook-basal body complex protein FliE compare
PP_4471 -1.9 -4.9 Magnesium transporter compare
PP_4120 -1.8 -3.2 NADH-quinone oxidoreductase subunit B compare
PP_5185 -1.8 -4.5 acetylglutamate kinase-like protein (regulatory domain)/amino acid N-acetyltransferase compare
PP_2414 -1.8 -2.0 conserved exported protein of unknown function compare
PP_1055 -1.8 -1.5 Type II secretion pathway protein GspN compare
PP_1217 -1.8 -4.6 Holliday junction ATP-dependent DNA helicase RuvB compare
PP_5338 -1.7 -3.7 aspartate ammonia-lyase compare
PP_0290 -1.7 -5.2 Imidazole glycerol phosphate synthase subunit HisH compare
PP_4129 -1.7 -2.8 NADH:ubiquinone oxidoreductase, membrane subunit L compare
PP_4131 -1.7 -4.5 NADH-quinone oxidoreductase subunit N compare
PP_1088 -1.7 -7.6 Argininosuccinate synthase compare
PP_4358 -1.7 -5.5 flagellar synthesis, switching and energizing component compare
PP_0566 -1.6 -1.4 translation-related factor compare
PP_1733 -1.6 -3.2 membrane ATPase of the MinC-MinD-MinE system compare
PP_4354 -1.6 -4.1 flagellar export apparatus subunit compare
PP_2121 -1.6 -2.2 putative Lipoprotein compare
PP_0065 -1.6 -2.7 NAD-binding component of TrK potassium transporter compare
PP_4066 -1.6 -3.9 methylglutaconyl-CoA hydratase compare
PP_4910 -1.5 -2.6 conserved protein of unknown function compare
PP_5327 -1.5 -3.1 putative phosphate ABC transporter, permease subunit compare
PP_4700 -1.5 -2.0 pantothenate synthetase compare
PP_4942 -1.5 -1.8 conserved protein of unknown function compare
PP_1319 -1.5 -3.8 Ubiquinol--cytochrome c reductase, cytochrome c1 compare
PP_4396 -1.4 -4.4 conserved protein of unknown function compare
PP_5000 -1.4 -1.7 peptidase component of the ATP-dependent HslVU protease compare
PP_0184 -1.4 -3.5 Argininosuccinate lyase compare
PP_4376 -1.4 -8.4 flagellar filament capping protein compare
PP_4804 -1.4 -1.9 RlpA-like lipoprotein compare
PP_4124 -1.4 -3.4 NADH-quinone oxidoreductase subunit G compare
PP_4126 -1.4 -1.3 NADH-quinone oxidoreductase subunit I compare
PP_4696 -1.4 -4.2 Nitrogen regulation protein NR(I) compare
PP_4381 -1.4 -8.8 Flagellar hook-associated protein FlgK compare
PP_4353 -1.4 -4.5 Flagellar biosynthetic protein fliR compare
PP_3098 -1.4 -1.2 conserved protein of unknown function compare
PP_4366 -1.4 -8.1 flagellum-specific ATP synthase compare
PP_5328 -1.4 -1.8 putative phosphate transport system permease protein compare
PP_4344 -1.4 -7.5 flagellar export pore protein compare
PP_4375 -1.4 -6.2 flagellar chaperone, inhibits premature FliC assembly compare
PP_4895 -1.3 -2.1 tRNA dimethylallyltransferase compare
PP_1216 -1.3 -2.5 Holliday junction ATP-dependent DNA helicase RuvA compare
PP_5114 -1.3 -2.0 putative adenine methyltransferase compare
PP_0406 -1.3 -2.3 Nucleotidyltransferase family protein compare
PP_4824 -1.3 -5.2 Sensor histidine kinase/response regulator compare
PP_4988 -1.3 -5.4 signal transduction histidine kinase CheA/CheY-like receiver compare
PP_5310 -1.2 -3.9 junction-specific ATP-dependent DNA helicase compare
PP_4726 -1.2 -1.6 Chaperone protein DnaJ compare
PP_1038 -1.2 -2.0 conserved protein of unknown function compare
PP_4828 -1.2 -1.6 Precorrin-8X methylmutase compare
PP_4382 -1.2 -7.9 Peptidoglycan hydrolase FlgJ compare
PP_2336 -1.2 -1.2 aconitate hydratase 1 compare
PP_4383 -1.2 -4.1 Flagellar P-ring protein compare
PP_5350 -1.2 -2.1 Transcriptional regulator, RpiR family compare
PP_4361 -1.2 -5.0 Flagellar hook-length control protein FliK compare
PP_5230 -1.2 -2.7 Tyrosine recombinase XerC compare
PP_5597 -1.2 -2.6 conserved protein of unknown function compare
PP_4384 -1.2 -5.5 Flagellar L-ring protein compare
PP_1763 -1.2 -3.1 putative oxidoreductase compare
PP_2378 -1.2 -2.0 Fe/S biogenesis protein NfuA compare
PP_3409 -1.1 -1.9 putative Cobalamin biosynthesis protein cobE compare
PP_3637 -1.1 -1.5 putative Sulfonate ABC transporter, ATP-binding protein compare
PP_0435 -1.1 -5.4 Peptidase, M23/M37 family compare
PP_4338 -1.1 -5.2 Chemotaxis histidine kinase CheA compare
PP_4380 -1.1 -7.3 Flagellar hook-associated protein FlgL compare
PP_4917 -1.1 -3.3 3',5'-cyclic-nucleotide phosphodiesterase compare
PP_4388 -1.1 -8.0 Flagellar hook protein FlgE compare
PP_4378 -1.1 -7.6 flagellin, filament structural protein compare
PP_5495 -1.1 -2.2 protein of unknown function compare
PP_4340 -1.1 -2.7 response regulator for chemotactic signal transduction compare
PP_4332 -1.1 -2.6 Chemotaxis protein CheW compare
PP_5393 -1.1 -1.3 putative metal-binding chaperone compare
PP_4394 -1.1 -2.9 flagella basal body P-ring formation protein compare
PP_4352 -1.1 -7.8 flagellin export apparatus, substrate specificity protein compare
PP_5445 -1.1 -2.1 conserved protein of unknown function compare
PP_4389 -1.1 -4.1 Flagellar basal-body rod modification protein FlgD compare
PP_4341 -1.1 -4.7 RNA polymerase sigma 28 (sigma F) factor for class III flagellar operons compare
PP_4008 -1.0 -4.4 ATP-dependent serine protease compare
PP_1074 -1.0 -3.1 DNA-binding transcriptional repressor - GlpR-glycerol-3-phosphate compare
PP_1994 -1.0 -1.5 tRNA pseudouridine (38-40)synthase compare
PP_0914 -1.0 -5.1 GGDEF domain protein compare
PP_1468 -1.0 -1.2 Tyrosine recombinase XerD compare
PP_2144 -1.0 -2.9 Transcriptional regulator, TetR family compare
PP_0002 -1.0 -4.3 probable chromosome partition protein compare
PP_2196 -1.0 -2.2 agmatinase compare
PP_4387 -1.0 -2.2 conserved exported protein of unknown function compare
PP_1224 -1.0 -4.4 periplasmic subunit of the TolQRA transport system compare
PP_1679 -1.0 -2.4 Nicotinate-nucleotide--dimethylbenzimidazole phosphoribosyltransferase compare
PP_4891 -1.0 -3.0 integral membrane ATP-dependent zinc metallopeptidase / HflK-HflC complex compare
PP_4390 -1.0 -4.8 flagellar basal-body rod protein FlgC compare
PP_4122 -1.0 -1.1 proton-pumping NADH:ubiquinone oxidoreductase, respiratory complex I, subunit E compare
PP_1635 -1.0 -1.6 DNA-binding response regulator compare
PP_1662 -1.0 -2.4 conserved protein of unknown function compare
PP_4337 -1.0 -4.0 chemotaxis response regulator protein-glutamate methylesterase of group 1 operon compare
PP_4961 -1.0 -1.3 putative Lipoprotein compare
PP_2402 -1.0 -1.6 putative Sensor histidine kinase compare
PP_0484 -0.9 -3.3 transporter of an unknown substrate compare
PP_4385 -0.9 -3.3 flagellar basal-body rod protein FlgG compare
PP_1318 -0.9 -4.0 Cytochrome b compare
PP_4391 -0.9 -5.1 flagellar basal-body rod protein FlgB compare
PP_4952 -0.9 -1.4 ATP-dependent RNA helicase, specific for 23S rRNA compare
PP_1022 -0.9 -2.9 glucose 6-phosphate-1-dehydrogenase compare
PP_4365 -0.9 -2.1 Flagellar protein FliJ compare
PP_2077 -0.9 -4.5 diaminopimelate decarboxylase compare
PP_0291 -0.9 -2.0 conserved protein of unknown function compare
PP_5202 -0.9 -2.1 putative cell division protein compare
PP_4720 -0.9 -2.1 putative RNA binding protein compare
PP_4261 -0.9 -3.0 cation-transporting P-type ATPase compare
PP_0512 -0.9 -1.6 hypothetical protein compare
PP_1609 -0.9 -2.3 conserved protein of unknown function compare
PP_5337 -0.9 -3.1 LysR family transcriptional regulator compare
PP_4880 -0.9 -5.3 exoribonuclease R compare
PP_4892 -0.9 -3.2 integral membrane ATP-dependent zinc metallopeptidase / HflK-HflC complex compare
PP_5090 -0.9 -1.5 putative cell division protein compare
PP_0240 -0.9 -1.7 Aliphatic sulfonates import ATP-binding protein SsuB compare
PP_1099 -0.9 -1.4 Cold shock protein CapB compare
PP_0801 -0.9 -1.1 conserved exported protein of unknown function compare
PP_1629 -0.9 -2.9 Protein RecA compare
PP_4964 -0.9 -2.2 D-erythrose 4-phosphate dehydrogenase compare
PP_4359 -0.9 -3.8 Flagellar protein FliL compare
PP_1097 -0.9 -1.1 Methionine--tRNA ligase compare
PP_1214 -0.9 -2.1 putative transcriptional regulatory protein compare
PP_3239 -0.9 -2.6 putative cointegrate resolution protein T Tn4652 compare
PP_2311 -0.8 -3.8 Mg-dependent cytoplasmic DNase / RNase compare
PP_0063 -0.8 -2.9 putative Lipid A biosynthesis lauroyl acyltransferase compare
PP_4334 -0.8 -4.8 ParA family protein compare
PP_5241 -0.8 -2.3 DNA-binding response regulator, LuxR family compare
PP_0959 -0.8 -0.9 phospholipid ABC transporter compare
PP_4392 -0.8 -5.5 chemotaxis protein methyltransferase compare
PP_1232 -0.8 -4.5 conserved exported protein of unknown function compare
PP_0677 -0.8 -2.1 putative Lipoprotein compare
PP_4260 -0.8 -2.5 conserved protein of unknown function compare
PP_3726 -0.8 -0.8 Enoyl-CoA hydratase/isomerase family protein compare
PP_4581 -0.8 -1.6 putative amidotransferase compare
PP_0949 -0.8 -2.7 putative ATP-binding protein UPF0042 compare
PP_1317 -0.8 -2.6 Ubiquinol-cytochrome c reductase iron-sulfur subunit compare
PP_0963 -0.8 -1.5 putative BolA family protein compare
PP_0984 -0.8 -1.5 conserved membrane protein of unknown function compare
PP_1362 -0.8 -2.4 pyruvate kinase II compare
PP_2306 -0.8 -1.8 conserved exported protein of unknown function compare
PP_5519 -0.8 -2.2 conserved protein of unknown function of phage origin compare
PP_5329 -0.8 -0.9 putative phosphate ABC transporter, periplasmic phosphate-binding protein compare
PP_3946 -0.8 -1.0 HTH-type transcriptional repressor NicR compare
PP_0127 -0.8 -2.8 Thiol:disulfide interchange protein compare
PP_4067 -0.8 -3.7 methylcrotonyl-CoA carboxylase biotin-containing subunit alpha compare
PP_1344 -0.8 -1.0 conserved protein of unknown function compare
PP_5008 -0.8 -0.7 Poly granule-associated protein compare
PP_1439 -0.8 -1.4 conserved exported protein of unknown function compare
PP_4342 -0.8 -1.5 flagellar synthesis regulator, putative ATPase compare
PP_3903 -0.8 -1.6 conserved protein of unknown function compare
PP_5701 -0.8 -1.0 conserved protein of unknown function compare
PP_2160 -0.8 -2.3 NADPH-dependent 7-cyano-7-deazaguanine reductase compare
PP_4722 -0.8 -2.6 Transcription elongation factor GreA compare
PP_5229 -0.8 -2.6 conserved protein of unknown function compare
PP_4121 -0.8 -2.1 NADH-quinone oxidoreductase subunit C/D compare
PP_0206 -0.8 -2.1 Ferredoxin, 4Fe-4S compare
PP_0289 -0.8 -3.2 Imidazoleglycerol-phosphate dehydratase compare
PP_1842 -0.8 -4.1 Glutamine amidotransferase, class I compare
PP_0345 -0.8 -1.3 putative Heptose kinase WapP compare
PP_4058 -0.8 -4.6 1,4-alpha-glucan branching enzyme compare
PP_2028 -0.7 -2.2 conserved protein of unknown function containing tetratricopeptide (TPR) domain repeat compare
PP_2513 -0.7 -2.3 4-oxalomesaconate tautomerase compare
PP_5594 -0.7 -1.7 conserved protein of unknown function compare
PP_2725 -0.7 -1.8 Protease PfpI compare
PP_1268 -0.7 -1.8 putative HtrA suppressor protein sohA compare
PP_4994 -0.7 -2.0 conserved protein of unknown function compare
PP_0136 -0.7 -3.7 conserved exported protein of unknown function compare
PP_1198 -0.7 -1.3 transcriptional regulator, Cro/CI family (higA antitoxin like) compare
PP_5492 -0.7 -2.9 conserved protein of unknown function compare
PP_0083 -0.7 -3.0 tryptophan synthase beta chain compare
PP_1428 -0.7 -0.9 Sigma factor AlgU negative regulatory protein compare
PP_4871 -0.7 -2.0 putative lysine decarboxylase family protein compare
PP_5039 -0.7 -1.7 conserved protein of unknown function compare
PP_4699 -0.7 -1.6 3-methyl-2-oxobutanoate hydroxymethyltransferase compare
PP_2409 -0.7 -2.4 cobalt-zinc-cadmium resistance protein compare
PP_3037 -0.7 -1.2 C4-type zinc finger protein, DksA/TraR family compare
PP_4262 -0.7 -0.9 Cytochrome oxidase maturation protein, cbb3-type compare
PP_1410 -0.7 -0.9 conserved protein of unknown function compare
PP_4997 -0.7 -1.2 pyrimidine operon regulatory protein/uracil phosphoribosyltransferase compare


Specific Phenotypes

None in this experiment

For Pseudomonas putida KT2440 in soil experiments

For soil Soil=PNNL_Prosser_PlotA_B_20191220; Sterility=sterile; Collection=outgrowth_in_LB_2hrs_then_extra_outgrowth_in_LB; SoilTreatment=coldshock; SoilTreatmentTime=0_hrs across organisms