Experiment set24IT033 for Pseudomonas putida KT2440

Compare to:

Soil=PNNL_Prosser_PlotA_B_20191220; Sterility=sterile; Collection=outgrowth_in_LB_2hrs_then_extra_outgrowth_in_LB; SoilTreatment=coldshock; SoilTreatmentTime=0_hrs

200 most detrimental genes:

  gene name fitness t score description  
PP_1650 +3.7 31.2 Sensor protein GacS compare
PP_4099 +3.7 27.8 two-componenent system BarA/UvrY - regulatory subunit compare
PP_1656 +3.0 9.9 ATP:GTP 3'-pyrophosphotransferase compare
PP_1655 +3.0 8.7 23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD compare
PP_0168 +1.4 13.5 putative surface adhesion protein compare
PP_0166 +1.4 12.5 HlyD family secretion protein compare
PP_5453 +1.4 2.8 conserved protein of unknown function compare
PP_0167 +1.4 13.0 Toxin secretion ATP-binding protein compare
PP_0165 +1.4 12.0 GGDEF domain protein compare
PP_4373 +1.3 10.4 Transcriptional regulator FleQ compare
PP_4519 +1.3 10.4 Agglutination protein compare
PP_0856 +1.3 1.9 conserved lipoprotein of unknown function compare
PP_4171 +1.1 8.9 conserved exported protein of unknown function compare
PP_4999 +1.0 0.5 dihydroorotase-like protein compare
PP_2794 +1.0 2.1 Oxidoreductase, short chain dehydrogenase/reductase family compare
PP_1562 +1.0 2.6 putative Phage terminase, small subunit compare
PP_4799 +0.9 0.5 putative Muramoyltetrapeptide carboxypeptidase compare
PP_0794 +0.9 2.4 1-phosphofructokinase monomer compare
PP_5571 +0.9 1.6 conserved protein of unknown function compare
PP_1415 +0.9 2.6 putative membrane associated enzyme subunit compare
PP_4797 +0.9 2.2 conserved protein of unknown function compare
PP_3312 +0.9 1.6 putative Heat shock protein compare
PP_2269 +0.9 2.5 putative N-acetylmuramoyl-L-alanine amidase compare
PP_5216 +0.9 1.8 exopolyphosphatase compare
PP_2429 +0.9 2.6 putative Membrane protein compare
PP_3110 +0.9 1.8 protein of unknown function compare
PP_1824 +0.8 1.4 Smr domain protein compare
PP_3384 +0.8 2.8 gluconate 2-dehydrogenase gamma subunit compare
PP_0916 +0.8 3.8 Amino acid transporter LysE compare
PP_4424 +0.8 1.9 Uncharacterized HTH-type transcriptional regulator y4tD compare
PP_2889 +0.8 3.6 putative Transmembrane regulator PrtR compare
PP_3971 +0.8 1.4 conserved protein of unknown function compare
PP_2970 +0.8 3.3 conserved exported protein of unknown function compare
PP_0958 +0.8 3.4 phospholipid ABC transporter ATP-binding subunit compare
PP_0048 +0.8 1.5 conserved protein of unknown function compare
PP_5500 +0.8 2.0 protein of unknown function compare
PP_5053 +0.7 3.3 Protein-export protein SecB compare
PP_3892 +0.7 1.2 conserved protein of unknown function compare
PP_4133 +0.7 1.4 Transcriptional regulator-related protein compare
PP_1699 +0.7 3.2 2-pyrone-4,6-dicarboxylic acid hydrolase compare
PP_2898 +0.7 2.2 conserved exported protein of unknown function compare
PP_1654 +0.7 0.8 cysteine synthase B compare
PP_1548 +0.7 1.4 conserved protein of unknown function compare
PP_0947 +0.7 3.1 conserved membrane protein of unknown function compare
PP_3840 +0.7 1.2 conserved protein of unknown function compare
PP_3541 +0.7 2.3 Transporter, MgtC family compare
PP_5456 +0.7 1.0 conserved protein of unknown function compare
PP_3378 +0.7 1.5 putative 2-ketogluconokinase compare
PP_1774 +0.7 2.2 conserved exported protein of unknown function compare
PP_3398 +0.7 1.0 putative Curli fiber surface-exposed nucleator CsgB compare
PP_1237 +0.7 0.7 4-hydroxy-tetrahydrodipicolinate synthase compare
PP_2899 +0.7 0.9 conserved exported protein of unknown function compare
PP_4162 +0.7 1.8 conserved membrane protein of unknown function compare
PP_5429 +0.7 2.6 protein of unknown function compare
PP_4247 +0.7 1.4 Exonuclease compare
PP_0152 +0.7 1.1 conserved exported protein of unknown function compare
PP_3539 +0.7 1.4 putative Transcriptional regulator compare
PP_4723 +0.7 0.4 Carbamoyl-phosphate synthase large chain compare
PP_2504 +0.7 1.9 putative tautomerase K2 compare
PP_1404 +0.7 1.9 conserved protein of unknown function compare
PP_0319 +0.7 1.4 conserved protein of unknown function compare
PP_5674 +0.6 1.6 conserved protein of unknown function compare
PP_5717 +0.6 1.7 conserved protein of unknown function compare
PP_4792 +0.6 1.6 conserved exported protein of unknown function compare
PP_2737 +0.6 1.6 Oxidoreductase, short-chain dehydrogenase/reductase family compare
PP_3496 +0.6 1.6 Endoribonuclease L-PSP compare
PP_2978 +0.6 2.0 conserved protein of unknown function compare
PP_5603 +0.6 2.6 putative FAD dependent oxidoreductase compare
PP_0355 +0.6 1.9 Response regulator compare
PP_1353 +0.6 1.0 conserved membrane protein of unknown function compare
PP_3792 +0.6 2.6 conserved protein of unknown function compare
PP_1544 +0.6 2.1 conserved protein of unknown function compare
PP_1550 +0.6 2.6 Transcriptional regulator, Cro/CI family compare
PP_2592 +0.6 2.1 Ferric siderophore ABC transporter, ATP-binding protein compare
PP_3487 +0.6 1.1 conserved exported protein of unknown function compare
PP_4693 +0.6 2.1 RNA polymerase-binding transcription factor DksA compare
PP_2497 +0.6 1.7 conserved protein of unknown function compare
PP_5583 +0.6 1.2 conserved protein of unknown function compare
PP_5143 +0.6 1.6 conserved membrane protein of unknown function compare
PP_2976 +0.6 1.4 putative transposase compare
PP_1176 +0.6 1.0 conserved protein of unknown function compare
PP_1479 +0.6 2.2 HicB protein compare
PP_5073 +0.6 1.2 conserved exported protein of unknown function compare
PP_0578 +0.6 3.0 putative Methyltransferase compare
PP_2999 +0.6 1.1 Glyoxalase family protein compare
PP_4217 +0.6 5.2 outer membrane ferripyoverdine receptor FpvA, TonB-dependent compare
PP_2747 +0.6 0.4 conserved protein of unknown function compare
PP_3198 +0.6 2.2 Ferredoxin, 2Fe-2S compare
PP_5457 +0.6 2.9 conserved protein of unknown function compare
PP_1001 +0.6 1.8 arginine deiminase compare
PP_1844 +0.6 2.6 1-acyl-sn-glycerol-3-phosphate acyltransferase compare
PP_1570 +0.5 1.0 Head-tail adaptor compare
PP_5572 +0.5 1.6 protein of unknown function compare
PP_3591 +0.5 2.2 Delta 1-piperideine-2-carboxylate reductase compare
PP_5705 +0.5 1.3 protein of unknown function compare
PP_3947 +0.5 2.8 nicotinate dehydrogenase subunit A compare
PP_1300 +0.5 1.6 putative amino acid ABC transporter - ATP-binding subunit compare
PP_4246 +0.5 3.5 Periplasmic binding protein compare
PP_1706 +0.5 2.2 Nitrite reductase compare
PP_4593 +0.5 1.3 conserved protein of unknown function compare
PP_2748 +0.5 1.0 putative Branched-chain amino acid ABC transporter, ATP-binding protein compare
PP_3888 +0.5 1.5 conserved protein of unknown function compare
PP_4848 +0.5 1.1 Curved DNA-binding protein compare
PP_3876 +0.5 0.8 conserved protein of unknown function compare
PP_4054 +0.5 1.6 conserved protein of unknown function compare
PP_0171 +0.5 2.9 ABC transporter, ATP-binding protein compare
PP_1501 +0.5 2.2 conserved protein of unknown function compare
PP_0549 +0.5 2.5 putative Lipoprotein compare
PP_1987 +0.5 1.1 Methlytransferase, UbiE/COQ5 family compare
PP_0703 +0.5 1.3 putative Transmembrane sensor compare
PP_3186 +0.5 2.1 putative Transcriptional activator compare
PP_5549 +0.5 2.3 conserved protein of unknown function compare
PP_2532 +0.5 2.3 conserved protein of unknown function compare
PP_2941 +0.5 2.5 conserved protein of unknown function compare
PP_5224 +0.5 1.7 conserved protein of unknown function compare
PP_3333 +0.5 0.8 conserved protein of unknown function compare
PP_1926 +0.5 1.8 putative phosphotyrosine-protein phosphatase compare
PP_1800 +0.5 2.9 Oxidoreductase Rmd compare
PP_2186 +0.5 1.8 putative Formate dehydrogenase, delta subunit compare
PP_4793 +0.5 1.6 conserved protein of unknown function compare
PP_0340 +0.5 3.6 Glutamate-ammonia-ligase adenylyltransferase compare
PP_0874 +0.5 1.2 conserved protein of unknown function compare
PP_4273 +0.5 0.6 Transcriptional regulator, MerR family compare
PP_2681 +0.5 1.2 coenzyme PQQ synthesis protein D compare
PP_3328 +0.5 1.6 putative Ring-cleaving dioxygenase compare
PP_4921 +0.5 2.4 Transporter, NCS1 nucleoside transporter family compare
PP_4561 +0.5 0.6 stress response protein compare
PP_4959 +0.5 3.7 diguanylate cyclase compare
PP_2756 +0.5 0.8 conserved protein of unknown function compare
PP_0086 +0.5 1.3 conserved protein of unknown function compare
PP_3523 +0.5 1.9 conserved protein of unknown function compare
PP_5681 +0.5 1.4 conserved protein of unknown function compare
PP_5191 +0.5 1.4 conserved exported protein of unknown function compare
PP_2060 +0.5 0.7 DNA-binding transcriptional dual regulator - SoxR-reversible one-electron oxidation of its [2Fe-2S] cluster, NADPH-dependent compare
PP_1829 +0.5 1.6 Hydrolase, alpha/beta fold family compare
PP_0574 +0.5 3.6 DNA-binding response regulator, LuxR family compare
PP_3055 +0.5 1.5 Pyocin R2_PP, tail formation protein compare
PP_0719 +0.5 0.3 ribosome-associated potassium-dependent informational ATP/GTPase compare
PP_1004 +0.5 1.8 conserved protein of unknown function compare
PP_2506 +0.5 2.4 conserved membrane protein of unknown function compare
PP_0223 +0.5 2.7 Monooxygenase, DszC family compare
PP_4196 +0.5 1.3 conserved exported protein of unknown function compare
PP_3346 +0.4 0.7 Nickel transporter ATP-binding protein compare
PP_5598 +0.4 1.0 conserved protein of unknown function compare
PP_1466 +0.4 1.3 Long-chain acyl-CoA thioester hydrolase family protein compare
PP_0871 +0.4 1.9 putative Glycine betaine/carnitine/choline ABC transporter, permease protein compare
PP_4314 +0.4 2.0 conserved protein of unknown function compare
PP_2500 +0.4 2.0 conserved protein of unknown function compare
PP_0241 +0.4 0.8 Transporter compare
PP_4887 +0.4 2.2 conserved protein of unknown function compare
PP_4847 +0.4 1.7 chaperone modulatory of CbpA co-chaperone protein compare
PP_4317 +0.4 1.0 conserved protein of unknown function compare
PP_2474 +0.4 1.4 Glutathione S-transferase family protein compare
PP_0986 +0.4 1.5 aminomethyltransferase compare
PP_3060 +0.4 1.9 putative tail sheath protein compare
PP_3761 +0.4 3.3 Sensor histidine kinase/response regulator compare
PP_2765 +0.4 1.5 putative Sulfonate monooxygenase MsuD compare
PP_4629 +0.4 1.7 Sensory box protein compare
PP_4073 +0.4 0.8 conserved exported protein of unknown function compare
PP_2511 +0.4 1.2 conserved protein of unknown function compare
PP_0022 +0.4 0.6 hypothetical protein compare
PP_5520 +0.4 1.3 conserved protein of unknown function compare
PP_t13 +0.4 0.7 tRNA-Lys compare
PP_5274 +0.4 0.6 conserved protein of unknown function compare
PP_4631 +0.4 1.8 conserved protein of unknown function compare
PP_0262 +0.4 1.7 conserved protein of unknown function compare
PP_5270 +0.4 1.7 D-amino-acid:quinone oxidoreductase (deaminating) compare
PP_0064 +0.4 1.8 conserved protein of unknown function compare
PP_t64 +0.4 2.0 tRNA-Gly compare
PP_0827 +0.4 1.8 putative phosphonate transport system permease protein PtxC compare
PP_2555 +0.4 2.3 conserved protein of unknown function compare
PP_1122 +0.4 1.0 OmpA family protein compare
PP_1301 +0.4 2.1 quality control serine endoprotease DegS compare
PP_0161 +0.4 1.8 putative transmembrane sensor compare
PP_1186 +0.4 0.6 two component system DNA-binding transcriptional dual regulator compare
PP_2403 +0.4 0.6 Chemotaxis protein CheY compare
PP_4817 +0.4 1.4 MaoC domain protein compare
PP_2406 +0.4 2.1 putative quinate/shikimate dehydrogenase compare
PP_2828 +0.4 1.8 conserved protein of unknown function compare
PP_4172 +0.4 1.9 conserved exported protein of unknown function compare
PP_4743 +0.4 1.5 conserved protein of unknown function compare
PP_5256 +0.4 2.2 Cyclic nucleotide-binding protein compare
PP_4156 +0.4 0.9 Transcriptional regulator, LysR family compare
PP_2768 +0.4 1.1 putative Branched-chain amino acid ABC transporter, permease protein compare
PP_0210 +0.4 1.6 putative Phycobiliprotein compare
PP_0591 +0.4 1.7 Adenine deaminase compare
PP_3941 +0.4 1.6 maleamate amidohydrolase compare
PP_1236 +0.4 1.8 putative Glycine cleavage system transcriptional repressor compare
PP_0775 +0.4 0.8 conserved protein of unknown function compare
PP_1687 +0.4 1.8 conserved exported protein of unknown function compare
PP_1794 +0.4 2.7 conserved hypothetical protein compare
PP_2677 +0.4 0.7 conserved exported protein of unknown function compare
PP_3185 +0.4 1.2 Pet18 protein compare
PP_1002 +0.4 1.5 arginine/ornithine antiporter compare
PP_0258 +0.4 1.0 regulator of murein cross-linking compare
PP_4560 +0.4 0.8 putative Ribonuclease BN compare
PP_1748 +0.4 1.6 conserved protein of unknown function compare
PP_5437 +0.4 1.5 protein of unknown function compare
PP_0025 +0.4 0.6 hypothetical protein compare
PP_4480 +0.4 2.0 arginine N-succinyltransferase, subunit alpha compare


Specific Phenotypes

None in this experiment

For Pseudomonas putida KT2440 in soil experiments

For soil Soil=PNNL_Prosser_PlotA_B_20191220; Sterility=sterile; Collection=outgrowth_in_LB_2hrs_then_extra_outgrowth_in_LB; SoilTreatment=coldshock; SoilTreatmentTime=0_hrs across organisms