Experiment set24IT032 for Pseudomonas simiae WCS417

Compare to:

JP1 MOI 1

200 most important genes:

  gene name fitness t score description  
PS417_20585 -5.0 -5.9 chemotaxis protein compare
PS417_02210 -4.5 -5.3 diguanylate cyclase compare
PS417_19630 -4.2 -2.1 LuxR family transcriptional regulator compare
PS417_08245 -4.1 -1.0 CDP-6-deoxy-L-threo-D-glycero-4-hexulose-3- dehydrase reductase compare
PS417_24705 -3.7 -1.7 D-alanyl-D-alanine carboxypeptidase compare
PS417_01115 -3.7 -2.0 serine acetyltransferase compare
PS417_21625 -3.7 -0.8 DNA-binding protein compare
PS417_02280 -3.4 -1.4 GlcNAc-PI de-N-acetylase compare
PS417_20635 -3.3 -1.1 ABC transporter ATP-binding protein compare
PS417_20880 -3.0 -2.5 GntR family transcriptional regulator compare
PS417_19625 -3.0 -2.0 histidine kinase compare
PS417_04705 -2.9 -2.1 hypothetical protein compare
PS417_24275 -2.8 -13.7 diguanylate phosphodiesterase compare
PS417_23580 -2.8 -0.9 peptidylprolyl isomerase compare
PS417_27135 -2.8 -0.6 glutamine synthetase compare
PS417_03930 -2.8 -5.6 thymidine phosphorylase compare
PS417_23995 -2.7 -0.9 preprotein translocase subunit SecG compare
PS417_19605 -2.7 -0.9 hypothetical protein compare
PS417_17000 -2.7 -3.1 MerR family transcriptional regulator compare
PS417_23950 -2.7 -1.0 polynucleotide phosphorylase/polyadenylase compare
PS417_19635 -2.6 -7.0 lipid kinase compare
PS417_19805 -2.6 -3.4 flagellar M-ring protein FliF compare
PS417_02555 -2.5 -11.3 exoribonuclease R compare
PS417_23545 -2.5 -1.1 gamma-glutamyl kinase compare
PS417_27585 -2.4 -0.9 diaminopimelate epimerase compare
PS417_20650 -2.3 -6.8 hypothetical protein compare
PS417_07000 -2.3 -3.4 hypothetical protein compare
PS417_08220 -2.2 -0.7 epimerase compare
PS417_19610 -2.2 -1.9 molybdenum cofactor sulfurase compare
PS417_04380 -2.2 -0.9 ABC transporter permease compare
PS417_13855 -2.2 -1.1 acetyl-CoA acetyltransferase compare
PS417_27180 -2.2 -1.4 peroxidase compare
PS417_02630 -2.1 -2.2 NAD synthetase compare
PS417_18205 -2.1 -1.6 aldehyde dehydrogenase compare
PS417_27795 -2.1 -0.5 orotate phosphoribosyltransferase compare
PS417_01095 -2.1 -1.2 amino acid ABC transporter ATP-binding protein compare
PS417_06125 -2.1 -1.9 hypothetical protein compare
PS417_27300 -2.1 -0.8 cell division protein ZapA compare
PS417_17945 -2.0 -0.8 hypothetical protein compare
PS417_15090 -2.0 -1.6 hypothetical protein compare
PS417_13175 -2.0 -1.8 iron transporter compare
PS417_20855 -2.0 -0.8 hypothetical protein compare
PS417_25270 -1.9 -2.0 NrdR family transcriptional regulator compare
PS417_08435 -1.9 -1.8 pilus assembly protein PilZ compare
PS417_23575 -1.9 -3.0 hypothetical protein compare
PS417_12355 -1.9 -1.8 magnesium chelatase compare
PS417_21475 -1.9 -2.6 HAD family hydrolase compare
PS417_06375 -1.9 -0.4 deoxycytidine triphosphate deaminase compare
PS417_24570 -1.8 -3.2 AsnC family transcriptional regulator compare
PS417_01640 -1.8 -3.6 histidine kinase compare
PS417_15465 -1.8 -2.5 carboxynorspermidine decarboxylase compare
PS417_22060 -1.8 -1.0 hypothetical protein compare
PS417_00220 -1.8 -1.3 hypothetical protein compare
PS417_17805 -1.7 -2.1 microcin B17 processing protein McbC compare
PS417_00630 -1.7 -2.6 nitrate ABC transporter substrate-binding protein compare
PS417_26770 -1.7 -1.8 tRNA (guanine-N7)-methyltransferase compare
PS417_18310 -1.7 -0.6 hypothetical protein compare
PS417_00625 -1.7 -3.1 taurine dioxygenase compare
PS417_21400 -1.6 -3.3 TetR family transcriptional regulator compare
PS417_05695 -1.6 -3.1 transcriptional regulator compare
PS417_27195 -1.6 -0.9 N-acetylglutamate synthase compare
PS417_14515 -1.6 -1.1 acetylglucosaminylphosphatidylinositol deacetylase compare
PS417_24500 -1.6 -1.7 DEAD/DEAH box helicase compare
PS417_04650 -1.6 -0.5 D-alanine--D-alanine ligase compare
PS417_00080 -1.6 -3.7 potassium transporter peripheral membrane component compare
PS417_15770 -1.6 -0.9 pyridoxine 5'-phosphate oxidase compare
PS417_19615 -1.5 -4.2 chemotaxis protein CheW compare
PS417_19285 -1.5 -1.2 ankyrin compare
PS417_10995 -1.5 -2.2 GntR family transcriptional regulator compare
PS417_25340 -1.5 -3.5 membrane protein compare
PS417_04340 -1.5 -3.8 ribosome hibernation promoting factor HPF compare
PS417_13870 -1.4 -2.1 hypothetical protein compare
PS417_02815 -1.4 -3.1 urea ABC transporter ATP-binding protein compare
PS417_03630 -1.4 -3.1 hypothetical protein compare
PS417_10040 -1.4 -0.5 MFS transporter compare
PS417_02225 -1.4 -1.8 bifunctional glutamine-synthetase adenylyltransferase/deadenyltransferase compare
PS417_15665 -1.4 -1.0 hypothetical protein compare
PS417_19720 -1.4 -1.0 DNA-binding protein compare
PS417_22840 -1.4 -0.9 tRNA-Met compare
PS417_16555 -1.4 -1.1 cupin compare
PS417_03430 -1.4 -2.8 methyltransferase type 11 compare
PS417_13165 -1.4 -1.2 peroxidase compare
PS417_00295 -1.4 -5.2 hypothetical protein compare
PS417_14590 -1.4 -0.9 LysR family transcriptional regulator compare
PS417_21255 -1.4 -1.5 hypothetical protein compare
PS417_13555 -1.4 -2.6 ABC transporter permease compare
PS417_14925 -1.3 -1.2 2-methylcitrate dehydratase compare
PS417_14835 -1.3 -2.3 amidase compare
PS417_19800 -1.3 -1.7 flagellar motor switch protein FliG compare
PS417_02560 -1.3 -0.9 23S rRNA methyltransferase compare
PS417_16510 -1.3 -2.6 Clp protease ClpX compare
PS417_19210 -1.3 -4.5 acetyl-CoA acetyltransferase compare
PS417_27205 -1.3 -2.0 adenylate cyclase compare
PS417_05985 -1.3 -1.6 chemotaxis protein CheY compare
PS417_12335 -1.3 -2.6 cobalt transporter compare
PS417_11825 -1.3 -2.0 transcriptional regulator compare
PS417_08410 -1.3 -1.1 hypothetical protein compare
PS417_02475 -1.3 -1.6 N-acetylmuramoyl-L-alanine amidase compare
PS417_28275 -1.2 -2.3 cobalamin biosynthesis protein CobW compare
PS417_11340 -1.2 -2.4 prevent-host-death protein compare
PS417_12565 -1.2 -1.1 2-dehydro-3-deoxygluconokinase compare
PS417_09085 -1.2 -1.0 hypothetical protein compare
PS417_03380 -1.2 -0.9 hypothetical protein compare
PS417_15135 -1.2 -0.9 hypothetical protein compare
PS417_00825 -1.2 -2.2 recombinase RecF compare
PS417_08155 -1.2 -0.9 integration host factor subunit beta compare
PS417_00465 -1.2 -2.3 hypothetical protein compare
PS417_22780 -1.2 -2.1 XRE family transcriptional regulator compare
PS417_12535 -1.2 -1.7 nitrilase compare
PS417_14655 -1.2 -0.6 lysine transporter LysE compare
PS417_18965 -1.2 -2.0 dienelactone hydrolase compare
PS417_19590 -1.2 -3.1 enoyl-CoA hydratase compare
PS417_23900 -1.2 -4.4 poly(A) polymerase compare
PS417_22205 -1.2 -3.5 potassium transporter TrkH compare
PS417_10480 -1.2 -1.2 glutathione S-transferase compare
PS417_02485 -1.2 -2.8 tRNA delta(2)-isopentenylpyrophosphate transferase compare
PS417_05830 -1.2 -1.7 hypothetical protein compare
PS417_25180 -1.2 -2.7 hypothetical protein compare
PS417_16785 -1.2 -2.9 ABC transporter permease compare
PS417_17680 -1.2 -1.8 ABC transporter compare
PS417_21535 -1.2 -2.5 chemotaxis protein CheY compare
PS417_06730 -1.1 -0.9 3-carboxy-cis,cis-muconate cycloisomerase compare
PS417_00075 -1.1 -1.6 hypothetical protein compare
PS417_25155 -1.1 -1.1 hypothetical protein compare
PS417_23825 -1.1 -3.5 penicillin-binding protein compare
PS417_22450 -1.1 -0.4 ATP-dependent DNA helicase RuvA compare
PS417_03460 -1.1 -2.2 type III secretion protein HrpI compare
PS417_07095 -1.1 -3.2 histidine kinase compare
PS417_27885 -1.1 -2.4 hypothetical protein compare
PS417_24365 -1.1 -2.4 FAD-binding molybdopterin dehydrogenase compare
PS417_25280 -1.1 -2.4 methyltransferase compare
PS417_10985 -1.1 -0.7 NADH:flavin oxidoreductase compare
PS417_05650 -1.1 -2.5 leucyl-tRNA synthetase compare
PS417_20665 -1.1 -3.3 hypothetical protein compare
PS417_26600 -1.1 -3.1 malonate decarboxylase subunit gamma compare
PS417_08360 -1.1 -1.4 DoxX family protein compare
PS417_15885 -1.1 -0.7 GCN5 family acetyltransferase compare
PS417_03495 -1.1 -1.7 type III secretory protein EscS compare
PS417_27870 -1.1 -0.9 ATP-dependent DNA helicase RecG compare
PS417_08190 -1.1 -5.8 membrane protein compare
PS417_16105 -1.1 -2.3 LysR family transcriptional regulator compare
PS417_00650 -1.1 -0.6 LysR family transcriptional regulator compare
PS417_18540 -1.1 -2.0 colicin V production CvpA compare
PS417_02740 -1.1 -0.8 LysR family transcriptional regulator compare
PS417_28145 -1.1 -1.3 AraC family transcriptional regulator compare
PS417_25380 -1.1 -1.5 hypothetical protein compare
PS417_12280 -1.1 -1.1 MerR family transcriptional regulator compare
PS417_22870 -1.1 -1.7 lipoprotein compare
PS417_16080 -1.1 -1.6 AraC family transcriptional regulator compare
PS417_26040 -1.1 -2.2 malate synthase compare
PS417_21360 -1.1 -0.6 termination factor Rho compare
PS417_10695 -1.0 -2.1 decarboxylase compare
PS417_10320 -1.0 -1.4 hypothetical protein compare
PS417_26815 -1.0 -1.3 peptidase M16 compare
PS417_28110 -1.0 -2.8 transglycosylase compare
PS417_09715 -1.0 -4.2 hypothetical protein compare
PS417_12190 -1.0 -1.6 microcin ABC transporter ATP-binding protein compare
PS417_19350 -1.0 -2.2 GTP cyclohydrolase compare
PS417_10305 -1.0 -1.5 hypothetical protein compare
PS417_05065 -1.0 -1.3 hypothetical protein compare
PS417_07400 -1.0 -1.2 hypothetical protein compare
PS417_27045 -1.0 -1.5 ATPase compare
PS417_06785 -1.0 -3.3 NADH:flavin oxidoreductase compare
PS417_13245 -1.0 -1.7 saccharopine dehydrogenase compare
PS417_15650 -1.0 -1.0 glutamine amidotransferase compare
PS417_17215 -1.0 -1.1 peptidylprolyl isomerase compare
PS417_22375 -1.0 -0.5 cold-shock protein compare
PS417_17835 -1.0 -1.7 2-hydroxyhepta-2,4-diene-1,7-dioate isomerase compare
PS417_06710 -1.0 -0.9 beta-ketoadipyl CoA thiolase compare
PS417_15930 -1.0 -1.5 thioredoxin reductase compare
PS417_16680 -1.0 -1.7 MFS transporter compare
PS417_15915 -1.0 -0.8 hypothetical protein compare
PS417_08590 -1.0 -1.0 hypothetical protein compare
PS417_23820 -1.0 -2.1 hypothetical protein compare
PS417_01290 -1.0 -1.1 ADP-ribose diphosphatase compare
PS417_14395 -1.0 -1.4 fe2+ zn2+ uptake regulation protein compare
PS417_23095 -1.0 -0.7 exodeoxyribonuclease compare
PS417_18250 -1.0 -1.4 chemotaxis protein compare
PS417_13575 -1.0 -1.8 succinylglutamate desuccinylase compare
PS417_26990 -1.0 -0.3 RNA pyrophosphohydrolase compare
PS417_11300 -1.0 -2.9 general secretion pathway protein GspE compare
PS417_05790 -1.0 -1.7 hypothetical protein compare
PS417_04945 -1.0 -1.7 fimbrial chaperone protein compare
PS417_16665 -1.0 -0.9 hypothetical protein compare
PS417_25985 -0.9 -1.1 dethiobiotin synthetase compare
PS417_13255 -0.9 -0.9 ABC transporter compare
PS417_02885 -0.9 -1.7 hypothetical protein compare
PS417_18105 -0.9 -0.7 iron-dicitrate transporter substrate-binding subunit compare
PS417_12515 -0.9 -1.2 lactate dehydrogenase compare
PS417_23665 -0.9 -2.1 Muconolactone isomerase (EC 5.3.3.4) (from data) compare
PS417_01195 -0.9 -1.4 RNA-binding protein S4 compare
PS417_20595 -0.9 -4.8 hypothetical protein compare
PS417_16750 -0.9 -1.3 ABC transporter ATP-binding protein compare
PS417_02695 -0.9 -0.9 protein hupE compare
PS417_07280 -0.9 -2.7 LysR family transcriptional regulator compare
PS417_10095 -0.9 -1.0 hypothetical protein compare
PS417_20645 -0.9 -3.2 membrane protein compare
PS417_25975 -0.9 -3.0 Acyl-CoA dehydrogenase (EC 1.3.8.7) (from data) compare
PS417_21680 -0.9 -2.1 succinylglutamate desuccinylase compare
PS417_06600 -0.9 -0.5 leucine/isoleucine/valine transporter ATP-binding subunit compare


Specific Phenotypes

For 2 genes in this experiment

For phage JP1 MOI 1 in Pseudomonas simiae WCS417

For phage JP1 MOI 1 across organisms