Experiment set24IT032 for Pseudomonas putida KT2440

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Soil=PNNL_Prosser_PlotA_B_20191220; Sterility=sterile; Collection=outgrowth_in_LB_2hrs_then_extra_outgrowth_in_LB; SoilTreatment=coldshock; SoilTreatmentTime=0_hrs

200 most important genes:

  gene name fitness t score description  
PP_0164 -5.9 -4.1 conserved protein of unknown function compare
PP_0760 -3.4 -6.9 conserved membrane protein of unknown function compare
PP_0846 -3.1 -1.8 DnaK-like molecular chaperone specific for IscU compare
PP_5289 -3.1 -4.6 Acetylglutamate kinase compare
PP_4122 -2.8 -1.9 proton-pumping NADH:ubiquinone oxidoreductase, respiratory complex I, subunit E compare
PP_1733 -2.7 -4.4 membrane ATPase of the MinC-MinD-MinE system compare
PP_1734 -2.7 -6.1 Probable septum site-determining protein MinC compare
PP_4379 -2.6 -4.6 Beta-ketoacyl-acyl-carrier-protein synthase I compare
PP_2402 -2.6 -3.0 putative Sensor histidine kinase compare
PP_1493 -2.5 -2.9 chemotaxis response regulator protein-glutamate methylesterase of group 3 operon compare
PP_4902 -2.4 -4.0 Oligoribonuclease compare
PP_2378 -2.4 -2.8 Fe/S biogenesis protein NfuA compare
PP_0218 -2.2 -8.6 Sensory box protein compare
PP_5309 -2.2 -6.7 oxidative and nitrosative stress transcriptional dual regulator compare
PP_4997 -2.2 -2.5 pyrimidine operon regulatory protein/uracil phosphoribosyltransferase compare
PP_4394 -2.1 -6.8 flagella basal body P-ring formation protein compare
PP_0184 -2.1 -5.5 Argininosuccinate lyase compare
PP_4358 -2.0 -5.2 flagellar synthesis, switching and energizing component compare
PP_4004 -2.0 -4.2 DNA translocase FtsK compare
PP_4262 -2.0 -3.8 Cytochrome oxidase maturation protein, cbb3-type compare
PP_5185 -1.9 -4.9 acetylglutamate kinase-like protein (regulatory domain)/amino acid N-acetyltransferase compare
PP_5095 -1.9 -1.3 pyrroline-5-carboxylate reductase compare
PP_1216 -1.9 -3.8 Holliday junction ATP-dependent DNA helicase RuvA compare
PP_5090 -1.9 -2.6 putative cell division protein compare
PP_4356 -1.9 -4.3 Flagellar protein FliO compare
PP_4942 -1.8 -2.8 conserved protein of unknown function compare
PP_4370 -1.8 -5.1 Flagellar hook-basal body complex protein FliE compare
PP_2433 -1.7 -3.1 conserved protein of unknown function compare
PP_4369 -1.7 -7.0 Flagellar M-ring protein compare
PP_4471 -1.7 -4.2 Magnesium transporter compare
PP_4700 -1.7 -1.2 pantothenate synthetase compare
PP_4131 -1.6 -4.0 NADH-quinone oxidoreductase subunit N compare
PP_0290 -1.6 -5.6 Imidazole glycerol phosphate synthase subunit HisH compare
PP_4126 -1.6 -1.1 NADH-quinone oxidoreductase subunit I compare
PP_4353 -1.6 -6.2 Flagellar biosynthetic protein fliR compare
PP_1224 -1.6 -6.1 periplasmic subunit of the TolQRA transport system compare
PP_0630 -1.6 -1.6 DNA gyrase inhibitor YacG compare
PP_1088 -1.5 -6.2 Argininosuccinate synthase compare
PP_5230 -1.5 -3.5 Tyrosine recombinase XerC compare
PP_4124 -1.5 -3.3 NADH-quinone oxidoreductase subunit G compare
PP_0513 -1.5 -3.2 DNA-binding transcriptional repressor NrdR-Zn2+-ATP/dATP compare
PP_4354 -1.5 -4.2 flagellar export apparatus subunit compare
PP_4120 -1.4 -3.1 NADH-quinone oxidoreductase subunit B compare
PP_0673 -1.4 -1.7 conserved protein of unknown function compare
PP_4368 -1.4 -6.4 flagellar motor switch protein compare
PP_1598 -1.4 -4.8 regulatory intramembrane protein RIP zinc protease compare
PP_5327 -1.4 -3.0 putative phosphate ABC transporter, permease subunit compare
PP_4337 -1.4 -4.5 chemotaxis response regulator protein-glutamate methylesterase of group 1 operon compare
PP_5017 -1.4 -1.4 Sec-independent protein translocase protein TatB compare
PP_4261 -1.4 -3.8 cation-transporting P-type ATPase compare
PP_4344 -1.4 -7.3 flagellar export pore protein compare
PP_4366 -1.3 -8.1 flagellum-specific ATP synthase compare
PP_5198 -1.3 -2.3 conserved protein of unknown function compare
PP_0293 -1.3 -0.9 Imidazole glycerol phosphate synthase subunit HisF compare
PP_5350 -1.3 -2.7 Transcriptional regulator, RpiR family compare
PP_4332 -1.3 -3.8 Chemotaxis protein CheW compare
PP_1826 -1.3 -2.1 Hydrolase, isochorismatase family compare
PP_4941 -1.3 -4.3 conserved exported protein of unknown function compare
PP_4392 -1.3 -6.7 chemotaxis protein methyltransferase compare
PP_4892 -1.3 -4.6 integral membrane ATP-dependent zinc metallopeptidase / HflK-HflC complex compare
PP_1293 -1.3 -1.8 molybdopterin synthase small subunit compare
PP_4546 -1.2 -3.1 ATP-dependent helicase HrpA compare
PP_4384 -1.2 -6.2 Flagellar L-ring protein compare
PP_4944 -1.2 -2.4 Carbamoyltransferase compare
PP_4380 -1.2 -7.9 Flagellar hook-associated protein FlgL compare
PP_1716 -1.2 -2.0 Transcriptional regulator, Cro/CI family compare
PP_4383 -1.2 -2.2 Flagellar P-ring protein compare
PP_4828 -1.2 -1.3 Precorrin-8X methylmutase compare
PP_0393 -1.2 -0.8 putative 2-amino-4-hydroxy-6-hydroxymethyldihydropteridine pyrophosphokinase compare
PP_5279 -1.2 -2.1 conserved protein of unknown function compare
PP_2615 -1.2 -2.1 hemolysin-coregulated protein compare
PP_4381 -1.2 -6.9 Flagellar hook-associated protein FlgK compare
PP_4367 -1.2 -3.1 Flagellar assembly protein FliH compare
PP_4391 -1.1 -5.5 flagellar basal-body rod protein FlgB compare
PP_0292 -1.1 -2.5 1-(5-phosphoribosyl)-5-((5-phosphoribosylamino)methylideneamino)imidazole-4-carboxamide isomerase (EC 5.3.1.16) (from data) compare
PP_4375 -1.1 -4.7 flagellar chaperone, inhibits premature FliC assembly compare
PP_1812 -1.1 -2.1 conserved protein of unknown function compare
PP_0435 -1.1 -5.2 Peptidase, M23/M37 family compare
PP_4376 -1.1 -6.6 flagellar filament capping protein compare
PP_3946 -1.1 -0.9 HTH-type transcriptional repressor NicR compare
PP_1994 -1.1 -1.7 tRNA pseudouridine (38-40)synthase compare
PP_0232 -1.1 -1.3 ATP-binding taurine transporter subunit compare
PP_1217 -1.1 -3.4 Holliday junction ATP-dependent DNA helicase RuvB compare
PP_4470 -1.1 -3.1 putative transcriptional regulator (Arc domain-containing) compare
PP_2145 -1.1 -2.5 beta-N-acetylglucosaminidase compare
PP_5216 -1.1 -1.6 exopolyphosphatase compare
PP_4726 -1.1 -1.3 Chaperone protein DnaJ compare
PP_4352 -1.1 -6.7 flagellin export apparatus, substrate specificity protein compare
PP_3883 -1.1 -2.4 putative Phage holin compare
PP_4952 -1.1 -1.2 ATP-dependent RNA helicase, specific for 23S rRNA compare
PP_1122 -1.1 -1.8 OmpA family protein compare
PP_4388 -1.1 -7.5 Flagellar hook protein FlgE compare
PP_4378 -1.0 -7.3 flagellin, filament structural protein compare
PP_4058 -1.0 -5.8 1,4-alpha-glucan branching enzyme compare
PP_5328 -1.0 -1.5 putative phosphate transport system permease protein compare
PP_5594 -1.0 -1.6 conserved protein of unknown function compare
PP_4993 -1.0 -2.3 Glutathione synthetase compare
PP_4385 -1.0 -4.2 flagellar basal-body rod protein FlgG compare
PP_2144 -1.0 -3.9 Transcriptional regulator, TetR family compare
PP_4338 -1.0 -5.1 Chemotaxis histidine kinase CheA compare
PP_4382 -1.0 -6.5 Peptidoglycan hydrolase FlgJ compare
PP_4365 -1.0 -4.3 Flagellar protein FliJ compare
PP_2302 -1.0 -3.5 DNA-binding, ATP-dependent protease compare
PP_4361 -1.0 -5.2 Flagellar hook-length control protein FliK compare
PP_1318 -1.0 -3.4 Cytochrome b compare
PP_1906 -1.0 -4.1 ribosomal large subunit pseudouridine synthase C compare
PP_4008 -1.0 -3.8 ATP-dependent serine protease compare
PP_4396 -1.0 -1.6 conserved protein of unknown function compare
PP_4129 -1.0 -2.2 NADH:ubiquinone oxidoreductase, membrane subunit L compare
PP_1055 -1.0 -1.2 Type II secretion pathway protein GspN compare
PP_5338 -1.0 -1.8 aspartate ammonia-lyase compare
PP_4696 -1.0 -2.4 Nitrogen regulation protein NR(I) compare
PP_1232 -1.0 -4.7 conserved exported protein of unknown function compare
PP_3730 -0.9 -1.5 Transcriptional regulatory protein AruR compare
PP_5058 -0.9 -2.6 Carboxy-terminal-processing protease compare
PP_1632 -0.9 -1.0 conserved protein of unknown function compare
PP_2796 -0.9 -3.6 conserved protein of unknown function compare
PP_1215 -0.9 -1.0 Crossover junction endodeoxyribonuclease RuvC compare
PP_1845 -0.9 -2.3 Enoyl-CoA hydratase/isomerase family protein compare
PP_3634 -0.9 -3.9 putative acetyltransferase, GNAT family compare
PP_4045 -0.9 -1.0 conserved protein of unknown function compare
PP_4359 -0.9 -3.6 Flagellar protein FliL compare
PP_2414 -0.9 -1.4 conserved exported protein of unknown function compare
PP_4895 -0.9 -1.3 tRNA dimethylallyltransferase compare
PP_4286 -0.9 -4.3 allantoinase compare
PP_4341 -0.9 -3.9 RNA polymerase sigma 28 (sigma F) factor for class III flagellar operons compare
PP_5329 -0.9 -0.8 putative phosphate ABC transporter, periplasmic phosphate-binding protein compare
PP_3449 -0.9 -1.5 conserved exported protein of unknown function compare
PP_4340 -0.9 -2.0 response regulator for chemotactic signal transduction compare
PP_3522 -0.9 -1.8 conserved protein of unknown function compare
PP_5253 -0.9 -2.0 Arylesterase compare
PP_1912 -0.9 -2.2 Phosphate acyltransferase compare
PP_t13 -0.8 -1.8 tRNA-Lys compare
PP_4989 -0.8 -2.3 Protein PilJ compare
PP_0063 -0.8 -2.6 putative Lipid A biosynthesis lauroyl acyltransferase compare
PP_3481 -0.8 -2.1 conserved exported protein of unknown function compare
PP_1186 -0.8 -1.1 two component system DNA-binding transcriptional dual regulator compare
PP_5337 -0.8 -2.6 LysR family transcriptional regulator compare
PP_3902 -0.8 -2.3 conserved protein of unknown function compare
PP_5310 -0.8 -3.5 junction-specific ATP-dependent DNA helicase compare
PP_5597 -0.8 -1.2 conserved protein of unknown function compare
PP_4121 -0.8 -2.2 NADH-quinone oxidoreductase subunit C/D compare
PP_0614 -0.8 -3.7 putative N-carbamoyl-beta-alanine amidohydrolase/allantoine amidohydrolase 1 compare
PP_2633 -0.8 -0.9 conserved protein of unknown function compare
PP_0963 -0.8 -1.6 putative BolA family protein compare
PP_1208 -0.8 -1.2 conserved protein of unknown function, SlyX family compare
PP_1147 -0.8 -2.6 conserved protein of unknown function compare
PP_0914 -0.8 -4.7 GGDEF domain protein compare
PP_4204 -0.8 -2.4 antitoxin of the type II toxin-antitoxin MqsRA system and DNA-binding transcriptional repressor compare
PP_1068 -0.8 -2.0 glutamate / aspartate ABC transporter - ATP binding subunit compare
PP_4334 -0.8 -4.3 ParA family protein compare
PP_4804 -0.8 -1.3 RlpA-like lipoprotein compare
PP_3434 -0.8 -1.3 conserved protein of unknown function compare
PP_1630 -0.8 -2.1 Regulatory protein RecX compare
PP_1096 -0.8 -1.2 putative electron transport complex protein compare
PP_4701 -0.8 -0.7 glucose-6-phosphate isomerase compare
PP_1468 -0.8 -1.1 Tyrosine recombinase XerD compare
PP_0123 -0.8 -3.8 DNA polymerase I, 5 compare
PP_0291 -0.8 -2.3 conserved protein of unknown function compare
PP_2371 -0.8 -2.9 Sulphite reductase hemoprotein, beta subunit compare
PP_4260 -0.8 -1.7 conserved protein of unknown function compare
PP_3904 -0.8 -2.6 conserved protein of unknown function compare
PP_1083 -0.7 -3.1 (2Fe-2S)-binding protein compare
PP_5475 -0.7 -0.9 conserved protein of unknown function compare
PP_1317 -0.7 -2.3 Ubiquinol-cytochrome c reductase iron-sulfur subunit compare
PP_4390 -0.7 -3.6 flagellar basal-body rod protein FlgC compare
PP_4909 -0.7 -2.4 phosphoserine phosphatase compare
PP_2672 -0.7 -2.6 Transcriptional activator protein ExaE compare
PP_1702 -0.7 -2.9 Recombination-associated protein RdgC compare
PP_5548 -0.7 -2.3 protein of unknown function compare
PP_0789 -0.7 -2.8 N-acetyl-anhydromuramyl-L-alanine-amidase compare
PP_5705 -0.7 -1.3 protein of unknown function compare
PP_4362 -0.7 -2.1 conserved protein of unknown function compare
PP_4406 -0.7 -1.6 conserved protein of unknown function compare
PP_3378 -0.7 -1.3 putative 2-ketogluconokinase compare
PP_0289 -0.7 -2.6 Imidazoleglycerol-phosphate dehydratase compare
PP_0065 -0.7 -1.7 NAD-binding component of TrK potassium transporter compare
PP_3672 -0.7 -2.1 conserved protein of unknown function compare
PP_1138 -0.7 -2.6 branched chain amino acid transporter - ATP binding subunit compare
PP_2885 -0.7 -2.6 putative Transporter compare
PP_4389 -0.7 -2.6 Flagellar basal-body rod modification protein FlgD compare
PP_4507 -0.7 -3.8 potassium transporter compare
PP_5317 -0.7 -2.0 Probable chorismate pyruvate-lyase compare
PP_4336 -0.7 -3.1 flagellar motor rotation protein compare
PP_5209 -0.7 -3.1 conserved exported protein of unknown function compare
PP_0585 -0.7 -1.8 putative metal-sensitive transcriptional regulator, MerR family compare
PP_4329 -0.7 -1.9 FlhB domain protein compare
PP_3798 -0.7 -3.7 conserved protein of unknown function compare
PP_1012 -0.7 -2.6 DNA-binding response regulator compare
PP_0120 -0.7 -3.2 putative zinc ABC transporter compare
PP_3876 -0.7 -1.1 conserved protein of unknown function compare
PP_4591 -0.7 -1.9 Ribonuclease D compare
PP_2152 -0.7 -1.5 glycerophosphoryl diester phosphodiesterase compare
PP_2088 -0.7 -0.7 RNA polymerase sigma factor SigX compare
PP_5331 -0.7 -1.6 Long-chain acyl-CoA thioester hydrolase compare
PP_0214 -0.7 -2.9 4-aminobutyrate aminotransferase compare
PP_0406 -0.7 -1.1 Nucleotidyltransferase family protein compare
PP_2857 -0.7 -0.8 conserved exported protein of unknown function compare
PP_4891 -0.7 -1.7 integral membrane ATP-dependent zinc metallopeptidase / HflK-HflC complex compare
PP_2900 -0.7 -1.9 conserved protein of unknown function compare


Specific Phenotypes

None in this experiment

For Pseudomonas putida KT2440 in soil experiments

For soil Soil=PNNL_Prosser_PlotA_B_20191220; Sterility=sterile; Collection=outgrowth_in_LB_2hrs_then_extra_outgrowth_in_LB; SoilTreatment=coldshock; SoilTreatmentTime=0_hrs across organisms