Experiment set24IT031 for Pseudomonas simiae WCS417

Compare to:

JP1 MOI 1

200 most important genes:

  gene name fitness t score description  
PS417_02210 -5.2 -5.1 diguanylate cyclase compare
PS417_19625 -5.0 -2.4 histidine kinase compare
PS417_20585 -4.5 -5.6 chemotaxis protein compare
PS417_03930 -4.0 -7.4 thymidine phosphorylase compare
PS417_06145 -3.7 -0.8 hypothetical protein compare
PS417_05985 -3.7 -1.6 chemotaxis protein CheY compare
PS417_17000 -3.6 -2.7 MerR family transcriptional regulator compare
PS417_08220 -3.5 -0.8 epimerase compare
PS417_05120 -3.4 -2.6 RNA polymerase subunit sigma-24 compare
PS417_02555 -3.4 -19.1 exoribonuclease R compare
PS417_19630 -3.3 -2.3 LuxR family transcriptional regulator compare
PS417_27290 -3.1 -2.2 hypothetical protein compare
PS417_24835 -3.1 -3.0 hypothetical protein compare
PS417_07700 -3.0 -2.0 chromosome partitioning protein ParA compare
PS417_19805 -3.0 -3.5 flagellar M-ring protein FliF compare
PS417_19600 -2.9 -0.9 exonuclease compare
PS417_02475 -2.9 -2.6 N-acetylmuramoyl-L-alanine amidase compare
PS417_13855 -2.9 -1.1 acetyl-CoA acetyltransferase compare
PS417_03045 -2.8 -1.5 hypothetical protein compare
PS417_24275 -2.8 -14.8 diguanylate phosphodiesterase compare
PS417_08245 -2.8 -0.9 CDP-6-deoxy-L-threo-D-glycero-4-hexulose-3- dehydrase reductase compare
PS417_20650 -2.8 -8.9 hypothetical protein compare
PS417_02560 -2.8 -1.3 23S rRNA methyltransferase compare
PS417_23580 -2.7 -0.8 peptidylprolyl isomerase compare
PS417_21655 -2.7 -0.9 aspartate kinase compare
PS417_23995 -2.6 -0.8 preprotein translocase subunit SecG compare
PS417_03100 -2.6 -0.8 pilus assembly protein compare
PS417_26605 -2.4 -1.1 malonate decarboxylase subunit beta compare
PS417_19635 -2.3 -5.4 lipid kinase compare
PS417_21625 -2.3 -0.7 DNA-binding protein compare
PS417_20635 -2.1 -1.0 ABC transporter ATP-binding protein compare
PS417_27795 -2.1 -0.5 orotate phosphoribosyltransferase compare
PS417_00630 -2.1 -3.4 nitrate ABC transporter substrate-binding protein compare
PS417_23625 -2.0 -1.9 LysR family transcriptional regulator compare
PS417_16490 -2.0 -0.6 cell division protein FtsK compare
PS417_27195 -2.0 -0.9 N-acetylglutamate synthase compare
PS417_20825 -2.0 -2.0 drug:proton antiporter compare
PS417_11060 -1.9 -2.5 transporter compare
PS417_06375 -1.8 -0.4 deoxycytidine triphosphate deaminase compare
PS417_13425 -1.8 -1.6 cupin compare
PS417_24370 -1.8 -0.7 (2Fe-2S)-binding protein compare
PS417_24115 -1.7 -1.4 hypothetical protein compare
PS417_19645 -1.7 -2.3 chemotaxis protein compare
PS417_18370 -1.7 -1.9 hypothetical protein compare
PS417_13730 -1.7 -1.7 hypothetical protein compare
PS417_00705 -1.7 -1.1 MarR family transcriptional regulator compare
PS417_20610 -1.7 -0.9 hypothetical protein compare
PS417_20665 -1.7 -4.9 hypothetical protein compare
PS417_28405 -1.7 -2.9 hypothetical protein compare
PS417_24705 -1.7 -1.3 D-alanyl-D-alanine carboxypeptidase compare
PS417_18310 -1.7 -0.6 hypothetical protein compare
PS417_03145 -1.7 -1.5 acetyl-CoA acetyltransferase compare
PS417_25290 -1.7 -1.4 hypothetical protein compare
PS417_12515 -1.7 -1.6 lactate dehydrogenase compare
PS417_26220 -1.6 -1.8 Rieske (2Fe-2S) protein compare
PS417_20880 -1.6 -1.9 GntR family transcriptional regulator compare
PS417_19615 -1.6 -4.2 chemotaxis protein CheW compare
PS417_02805 -1.6 -1.3 urease subunit gamma compare
PS417_03380 -1.6 -0.8 hypothetical protein compare
PS417_22565 -1.6 -0.3 formyltetrahydrofolate deformylase compare
PS417_01290 -1.6 -1.6 ADP-ribose diphosphatase compare
PS417_21400 -1.6 -3.0 TetR family transcriptional regulator compare
PS417_09035 -1.6 -2.5 hypothetical protein compare
PS417_19095 -1.6 -1.1 hypothetical protein compare
PS417_06245 -1.5 -1.0 zinc metallopeptidase RseP compare
PS417_23575 -1.5 -1.9 hypothetical protein compare
PS417_18730 -1.5 -2.0 ABC transporter permease compare
PS417_04835 -1.5 -2.3 hemolysin D compare
PS417_00045 -1.5 -1.4 glycerol acyltransferase compare
PS417_08410 -1.5 -1.2 hypothetical protein compare
PS417_20570 -1.5 -4.0 3-oxoacyl-ACP synthase compare
PS417_08335 -1.5 -1.1 hypothetical protein compare
PS417_00625 -1.5 -3.0 taurine dioxygenase compare
PS417_01735 -1.5 -2.7 ABC transporter permease compare
PS417_23105 -1.5 -1.3 hypothetical protein compare
PS417_24460 -1.5 -2.0 hypothetical protein compare
PS417_08185 -1.5 -2.7 glycosyl transferase compare
PS417_04650 -1.5 -0.5 D-alanine--D-alanine ligase compare
PS417_04500 -1.5 -1.1 hypothetical protein compare
PS417_03785 -1.5 -1.6 pilus assembly protein PilV compare
PS417_13010 -1.5 -1.6 alpha/beta hydrolase compare
PS417_25280 -1.5 -2.6 methyltransferase compare
PS417_08195 -1.5 -4.1 hypothetical protein compare
PS417_10320 -1.4 -1.8 hypothetical protein compare
PS417_13205 -1.4 -1.3 isochorismate-pyruvate lyase compare
PS417_15665 -1.4 -0.9 hypothetical protein compare
PS417_23855 -1.4 -1.2 ABC transporter substrate-binding protein compare
PS417_00635 -1.4 -2.3 sulfonate ABC transporter ATP-binding protein compare
PS417_15745 -1.4 -1.4 lipid carrier protein compare
PS417_02975 -1.4 -1.9 3-dehydroquinate dehydratase compare
PS417_18915 -1.3 -1.7 hypothetical protein compare
PS417_04385 -1.3 -1.7 organic solvent ABC transporter substrate-binding protein compare
PS417_24650 -1.3 -1.1 membrane protein compare
PS417_18420 -1.3 -3.1 deoxyribonuclease compare
PS417_03560 -1.3 -0.6 GTP-binding protein compare
PS417_00080 -1.3 -4.5 potassium transporter peripheral membrane component compare
PS417_17215 -1.3 -1.4 peptidylprolyl isomerase compare
PS417_21700 -1.3 -2.2 arginine N-succinyltransferase compare
PS417_15885 -1.3 -1.2 GCN5 family acetyltransferase compare
PS417_26470 -1.3 -1.4 cytochrome C compare
PS417_01620 -1.3 -1.8 preprotein translocase subunit SecB compare
PS417_08230 -1.2 -1.0 lipopolysaccharide biosynthesis protein RfbH compare
PS417_07160 -1.2 -5.9 glycine cleavage system protein R compare
PS417_14200 -1.2 -1.6 hypothetical protein compare
PS417_11000 -1.2 -2.1 L-arabonate dehydratase (EC 4.2.1.25) (from data) compare
PS417_22810 -1.2 -1.1 DNA base-flipping protein YbaZ compare
PS417_23205 -1.2 -1.7 transcriptional regulator compare
PS417_12375 -1.2 -1.3 serine/threonine protein phosphatase compare
PS417_03260 -1.2 -0.5 5S ribosomal RNA compare
PS417_08545 -1.2 -0.9 aromatic ring-opening dioxygenase LigB compare
PS417_09085 -1.2 -1.0 hypothetical protein compare
PS417_27865 -1.2 -1.8 LysR family transcriptional regulator compare
PS417_01915 -1.2 -0.2 ATP-dependent protease ATP-binding subunit HslU compare
PS417_17490 -1.2 -1.2 ABC transporter ATP-binding protein compare
PS417_05500 -1.2 -0.9 2,3-diketo-5-methylthio-1-phosphopentane phosphatase compare
PS417_17945 -1.2 -0.6 hypothetical protein compare
PS417_25225 -1.2 -1.5 MFS transporter compare
PS417_19620 -1.2 -1.0 hypothetical protein compare
PS417_15085 -1.2 -2.2 ATPase AAA compare
PS417_16275 -1.2 -1.4 hypothetical protein compare
PS417_11340 -1.2 -1.4 prevent-host-death protein compare
PS417_13145 -1.2 -1.4 50S ribosomal protein L21 compare
PS417_03340 -1.2 -1.3 gluconate transporter compare
PS417_11570 -1.2 -1.8 ABC transporter permease compare
PS417_12355 -1.1 -1.6 magnesium chelatase compare
PS417_06745 -1.1 -1.3 polysaccharide deacetylase compare
PS417_20645 -1.1 -5.2 membrane protein compare
PS417_12565 -1.1 -1.2 2-dehydro-3-deoxygluconokinase compare
PS417_14940 -1.1 -0.8 LysR family transcriptional regulator compare
PS417_06400 -1.1 -2.2 succinylglutamate desuccinylase compare
PS417_21125 -1.1 -3.1 phosphoadenosine phosphosulfate reductase compare
PS417_22935 -1.1 -1.9 hypothetical protein compare
PS417_02815 -1.1 -1.9 urea ABC transporter ATP-binding protein compare
PS417_15400 -1.1 -1.1 hypothetical protein compare
PS417_16950 -1.1 -2.0 fimbrial protein compare
PS417_23840 -1.1 -3.2 competence protein TfoX compare
PS417_17240 -1.1 -1.0 trigger factor compare
PS417_22450 -1.1 -0.4 ATP-dependent DNA helicase RuvA compare
PS417_03455 -1.1 -0.9 type III secretion protein compare
PS417_20705 -1.1 -2.9 cbb3-type cytochrome c oxidase subunit II compare
PS417_17135 -1.1 -3.1 LysR family transcriptional regulator compare
PS417_26520 -1.1 -3.2 amino acid ABC transporter substrate-binding protein compare
PS417_12520 -1.1 -1.5 hypothetical protein compare
PS417_06895 -1.1 -1.4 DNA-binding protein compare
PS417_04895 -1.1 -2.4 carboxylesterase compare
PS417_24290 -1.1 -2.4 hypothetical protein compare
PS417_07820 -1.1 -1.2 transposase compare
PS417_01590 -1.1 -1.1 polysaccharide deacetylase compare
PS417_23455 -1.0 -1.6 LrgA compare
PS417_21220 -1.0 -2.2 acetyl-CoA acetyltransferase compare
PS417_13175 -1.0 -1.2 iron transporter compare
PS417_26040 -1.0 -2.6 malate synthase compare
PS417_27205 -1.0 -1.7 adenylate cyclase compare
PS417_22640 -1.0 -2.1 cytochrome C biogenesis protein CcmE compare
PS417_00370 -1.0 -0.5 hypothetical protein compare
PS417_15325 -1.0 -0.6 type VI secretion protein compare
PS417_09010 -1.0 -1.2 phosphohistidine phosphatase compare
PS417_16160 -1.0 -1.6 ABC transporter substrate-binding protein compare
PS417_12005 -1.0 -2.1 hypothetical protein compare
PS417_10985 -1.0 -0.6 NADH:flavin oxidoreductase compare
PS417_20560 -1.0 -2.9 transmembrane anti-sigma factor compare
PS417_19800 -1.0 -0.9 flagellar motor switch protein FliG compare
PS417_27490 -1.0 -1.1 hypothetical protein compare
PS417_10130 -1.0 -2.5 hypothetical protein compare
PS417_27925 -1.0 -1.5 hypothetical protein compare
PS417_27895 -1.0 -3.1 membrane protein compare
PS417_07095 -1.0 -2.8 histidine kinase compare
PS417_14840 -1.0 -1.5 abortive phage infection protein compare
PS417_01600 -1.0 -4.2 peptidase M23 compare
PS417_01310 -1.0 -1.5 ATPase compare
PS417_26725 -1.0 -1.8 hypothetical protein compare
PS417_02340 -1.0 -2.3 LysR family transcriptional regulator compare
PS417_00550 -1.0 -0.7 hypothetical protein compare
PS417_08190 -1.0 -4.7 membrane protein compare
PS417_18540 -1.0 -1.8 colicin V production CvpA compare
PS417_20775 -1.0 -3.0 coproporphyrinogen III oxidase compare
PS417_26115 -1.0 -2.5 glutamine ABC transporter ATP-binding protein compare
PS417_05010 -1.0 -1.3 IclR family transcriptional regulator compare
PS417_26270 -1.0 -1.4 AraC family transcriptional regulator compare
PS417_13300 -1.0 -0.9 short-chain dehydrogenase compare
PS417_01115 -1.0 -1.0 serine acetyltransferase compare
PS417_18205 -1.0 -0.9 aldehyde dehydrogenase compare
PS417_25815 -1.0 -2.3 magnesium transporter ApaG compare
PS417_14995 -1.0 -2.0 serine/threonine protein kinase compare
PS417_16770 -1.0 -2.9 pyridine nucleotide-disulfide oxidoreductase compare
PS417_20800 -1.0 -3.0 recombination protein RecR compare
PS417_26985 -0.9 -1.9 phosphoenolpyruvate-protein phosphotransferase compare
PS417_01425 -0.9 -2.0 AraC family transcriptional regulator compare
PS417_18055 -0.9 -0.6 general secretion pathway protein GspK compare
PS417_16105 -0.9 -1.7 LysR family transcriptional regulator compare
PS417_04225 -0.9 -1.4 conjugal transfer protein TraR compare
PS417_17455 -0.9 -1.8 cytochrome C compare
PS417_09245 -0.9 -0.7 recombinase RdgC compare
PS417_12335 -0.9 -1.3 cobalt transporter compare
PS417_14245 -0.9 -1.1 hypothetical protein compare
PS417_00175 -0.9 -0.6 CigR compare
PS417_23160 -0.9 -1.9 50S rRNA methyltransferase compare
PS417_08990 -0.9 -1.3 ABC transporter substrate-binding protein compare
PS417_26635 -0.9 -1.9 hypothetical protein compare
PS417_26085 -0.9 -2.1 peptidase compare


Specific Phenotypes

For 3 genes in this experiment

For phage JP1 MOI 1 in Pseudomonas simiae WCS417

For phage JP1 MOI 1 across organisms