Experiment set24IT030 for Pseudomonas simiae WCS417

Compare to:

JP1 MOI 10

200 most important genes:

  gene name fitness t score description  
PS417_23095 -4.7 -1.1 exodeoxyribonuclease compare
PS417_17000 -4.7 -2.3 MerR family transcriptional regulator compare
PS417_06095 -4.0 -1.4 energy transducer TonB compare
PS417_08545 -3.9 -1.6 aromatic ring-opening dioxygenase LigB compare
PS417_19630 -3.9 -2.1 LuxR family transcriptional regulator compare
PS417_02210 -3.7 -6.8 diguanylate cyclase compare
PS417_15805 -3.6 -1.5 transporter compare
PS417_19635 -3.5 -6.1 lipid kinase compare
PS417_21625 -3.4 -0.8 DNA-binding protein compare
PS417_19805 -3.4 -2.8 flagellar M-ring protein FliF compare
PS417_10405 -3.4 -0.8 filamentous hemagglutinin compare
PS417_08220 -3.3 -0.8 epimerase compare
PS417_20585 -3.2 -4.8 chemotaxis protein compare
PS417_26050 -3.0 -4.8 response regulator compare
PS417_05985 -2.9 -2.0 chemotaxis protein CheY compare
PS417_00080 -2.9 -7.8 potassium transporter peripheral membrane component compare
PS417_27290 -2.9 -2.0 hypothetical protein compare
PS417_21255 -2.8 -1.8 hypothetical protein compare
PS417_24275 -2.8 -14.7 diguanylate phosphodiesterase compare
PS417_02555 -2.8 -12.0 exoribonuclease R compare
PS417_24705 -2.7 -1.6 D-alanyl-D-alanine carboxypeptidase compare
PS417_19065 -2.7 -0.9 monooxygenase compare
PS417_09470 -2.7 -0.9 hypothetical protein compare
PS417_02740 -2.7 -2.3 LysR family transcriptional regulator compare
PS417_23580 -2.7 -0.9 peptidylprolyl isomerase compare
PS417_00065 -2.7 -1.2 3-methyladenine DNA glycosylase compare
PS417_19625 -2.6 -2.3 histidine kinase compare
PS417_08155 -2.6 -1.1 integration host factor subunit beta compare
PS417_02630 -2.6 -2.6 NAD synthetase compare
PS417_02560 -2.5 -1.2 23S rRNA methyltransferase compare
PS417_08245 -2.5 -0.8 CDP-6-deoxy-L-threo-D-glycero-4-hexulose-3- dehydrase reductase compare
PS417_23950 -2.5 -1.0 polynucleotide phosphorylase/polyadenylase compare
PS417_02805 -2.4 -1.1 urease subunit gamma compare
PS417_10600 -2.4 -1.6 hypothetical protein compare
PS417_22840 -2.4 -1.1 tRNA-Met compare
PS417_14305 -2.4 -2.1 hydroxyproline-2-epimerase compare
PS417_23900 -2.3 -8.2 poly(A) polymerase compare
PS417_03930 -2.3 -4.9 thymidine phosphorylase compare
PS417_26365 -2.3 -3.1 EmrB/QacA subfamily drug resistance transporter compare
PS417_05560 -2.3 -1.4 ABC transporter compare
PS417_24115 -2.3 -1.5 hypothetical protein compare
PS417_01030 -2.3 -1.3 glutamine ABC transporter substrate-binding protein compare
PS417_14980 -2.2 -0.9 universal stress protein UspA compare
PS417_00370 -2.2 -0.8 hypothetical protein compare
PS417_22205 -2.2 -7.1 potassium transporter TrkH compare
PS417_20570 -2.2 -3.7 3-oxoacyl-ACP synthase compare
PS417_20635 -2.2 -0.9 ABC transporter ATP-binding protein compare
PS417_23210 -2.1 -1.5 serine acetyltransferase compare
PS417_10985 -2.1 -0.9 NADH:flavin oxidoreductase compare
PS417_05975 -2.1 -0.5 chemotaxis protein CheW compare
PS417_11400 -2.1 -1.2 phosphoglycerate mutase compare
PS417_20715 -2.0 -2.3 cytochrome Cbb3 compare
PS417_16555 -2.0 -1.3 cupin compare
PS417_12390 -2.0 -1.8 hypothetical protein compare
PS417_02895 -2.0 -1.7 precorrin-6Y C5,15-methyltransferase compare
PS417_27595 -2.0 -1.9 recombinase XerC compare
PS417_27795 -2.0 -0.5 orotate phosphoribosyltransferase compare
PS417_05535 -1.9 -1.1 Fis family transcriptional regulator compare
PS417_17780 -1.9 -0.9 Ais protein compare
PS417_10810 -1.9 -1.2 hypothetical protein compare
PS417_16490 -1.9 -0.6 cell division protein FtsK compare
PS417_04340 -1.9 -4.3 ribosome hibernation promoting factor HPF compare
PS417_08410 -1.9 -1.2 hypothetical protein compare
PS417_06245 -1.8 -0.9 zinc metallopeptidase RseP compare
PS417_21480 -1.8 -0.7 23S rRNA pseudouridylate synthase compare
PS417_13075 -1.8 -1.4 hypothetical protein compare
PS417_00630 -1.8 -3.6 nitrate ABC transporter substrate-binding protein compare
PS417_21400 -1.8 -3.1 TetR family transcriptional regulator compare
PS417_04365 -1.7 -0.6 3-deoxy-D-manno-octulosonate 8-phosphate phosphatase compare
PS417_04305 -1.7 -0.8 aspartate ammonia-lyase compare
PS417_26335 -1.7 -1.4 BetI family transcriptional regulator compare
PS417_06375 -1.7 -0.4 deoxycytidine triphosphate deaminase compare
PS417_08435 -1.7 -1.6 pilus assembly protein PilZ compare
PS417_20650 -1.7 -4.6 hypothetical protein compare
PS417_17945 -1.7 -0.7 hypothetical protein compare
PS417_19800 -1.6 -1.1 flagellar motor switch protein FliG compare
PS417_00625 -1.6 -3.6 taurine dioxygenase compare
PS417_02880 -1.6 -1.9 copper chaperone compare
PS417_17610 -1.6 -1.1 AsnC family transcriptional regulator compare
PS417_15505 -1.6 -2.9 glutaminase compare
PS417_08135 -1.6 -2.6 3-phosphoshikimate 1-carboxyvinyltransferase compare
PS417_19615 -1.6 -3.5 chemotaxis protein CheW compare
PS417_17630 -1.6 -1.8 RNA polymerase sigma factor compare
PS417_02160 -1.6 -1.0 hypothetical protein compare
PS417_01965 -1.5 -1.3 fimbriae biosynthesis protein compare
PS417_26345 -1.5 -2.8 choline dehydrogenase compare
PS417_12355 -1.5 -1.6 magnesium chelatase compare
PS417_20825 -1.5 -1.8 drug:proton antiporter compare
PS417_05865 -1.5 -1.0 hypothetical protein compare
PS417_18705 -1.5 -3.6 succinate dehydrogenase compare
PS417_15105 -1.5 -3.2 membrane protein compare
PS417_20610 -1.5 -0.8 hypothetical protein compare
PS417_17865 -1.5 -2.6 2-keto-3-deoxy-L-rhamnonate aldolase compare
PS417_03525 -1.5 -1.1 hypothetical protein compare
PS417_25780 -1.4 -1.8 molecular chaperone DnaJ compare
PS417_20705 -1.4 -3.7 cbb3-type cytochrome c oxidase subunit II compare
PS417_25975 -1.4 -3.9 Acyl-CoA dehydrogenase (EC 1.3.8.7) (from data) compare
PS417_20645 -1.4 -6.8 membrane protein compare
PS417_17685 -1.4 -2.0 allantoate amidohydrolase compare
PS417_08200 -1.4 -1.9 hypothetical protein compare
PS417_19930 -1.4 -2.2 DNA methyltransferase compare
PS417_19285 -1.4 -1.0 ankyrin compare
PS417_16395 -1.4 -1.6 arsenate reductase compare
PS417_08685 -1.4 -0.7 flagellar hook-length control protein FliK compare
PS417_18540 -1.4 -1.6 colicin V production CvpA compare
PS417_25710 -1.4 -1.0 indole-3-glycerol-phosphate synthase compare
PS417_07095 -1.4 -3.7 histidine kinase compare
PS417_14655 -1.4 -0.6 lysine transporter LysE compare
PS417_10045 -1.4 -1.5 hypothetical protein compare
PS417_11945 -1.4 -1.9 hypothetical protein compare
PS417_26985 -1.3 -2.5 phosphoenolpyruvate-protein phosphotransferase compare
PS417_27195 -1.3 -0.8 N-acetylglutamate synthase compare
PS417_19605 -1.3 -0.8 hypothetical protein compare
PS417_11415 -1.3 -2.2 hypothetical protein compare
PS417_22350 -1.3 -1.4 Fis family transcriptional regulator compare
PS417_21360 -1.3 -0.7 termination factor Rho compare
PS417_12910 -1.3 -2.1 alanine racemase compare
PS417_25815 -1.3 -2.5 magnesium transporter ApaG compare
PS417_03340 -1.3 -2.2 gluconate transporter compare
PS417_05025 -1.3 -1.3 maleylacetoacetate isomerase compare
PS417_04280 -1.3 -2.7 carbon-nitrogen hydrolase compare
PS417_19430 -1.3 -1.3 ureidoglycolate hydrolase compare
PS417_23610 -1.2 -2.3 hypothetical protein compare
PS417_00085 -1.2 -1.1 16S rRNA methyltransferase compare
PS417_11825 -1.2 -1.5 transcriptional regulator compare
PS417_26420 -1.2 -0.6 hypothetical protein compare
PS417_00985 -1.2 -2.5 MFS transporter compare
PS417_01015 -1.2 -4.3 polar amino acid ABC transporter permease compare
PS417_23995 -1.2 -0.6 preprotein translocase subunit SecG compare
PS417_02385 -1.2 -0.6 esterase compare
PS417_11015 -1.2 -1.3 Ketoglutarate semialdehyde dehydrogenase (EC 1.2.1.26) (from data) compare
PS417_19620 -1.2 -1.0 hypothetical protein compare
PS417_24615 -1.2 -1.0 hypothetical protein compare
PS417_20205 -1.2 -2.4 LysR family transcriptional regulator compare
PS417_04115 -1.2 -3.6 alpha/beta hydrolase compare
PS417_09140 -1.2 -1.7 biopolymer transporter ExbB compare
PS417_19305 -1.2 -1.8 acireductone dioxygenase compare
PS417_00045 -1.2 -1.2 glycerol acyltransferase compare
PS417_18885 -1.2 -1.3 GntR family transcriptional regulator compare
PS417_24575 -1.2 -0.8 hypothetical protein compare
PS417_11510 -1.2 -0.8 AraC family transcriptional regulator compare
PS417_15325 -1.2 -0.6 type VI secretion protein compare
PS417_19610 -1.1 -1.2 molybdenum cofactor sulfurase compare
PS417_19645 -1.1 -1.5 chemotaxis protein compare
PS417_23105 -1.1 -1.0 hypothetical protein compare
PS417_18775 -1.1 -2.0 5-methyltetrahydropteroyltriglutamate-- homocysteine methyltransferase compare
PS417_16735 -1.1 -2.1 aldehyde dehydrogenase compare
PS417_14810 -1.1 -1.7 Fosmidomycin resistance protein compare
PS417_08515 -1.1 -2.3 hypothetical protein compare
PS417_12190 -1.1 -2.4 microcin ABC transporter ATP-binding protein compare
PS417_01270 -1.1 -0.9 iron ABC transporter substrate-binding protein compare
PS417_03685 -1.1 -2.1 FAD-dependent oxidoreductase compare
PS417_23170 -1.1 -1.0 FeS assembly protein IscX compare
PS417_19215 -1.1 -2.1 polyphosphate kinase compare
PS417_21690 -1.1 -2.9 N-succinylarginine dihydrolase compare
PS417_15100 -1.1 -1.1 BatB protein compare
PS417_10320 -1.1 -1.4 hypothetical protein compare
PS417_16815 -1.1 -1.4 acyl-CoA dehydrogenase compare
PS417_08045 -1.1 -0.8 uracil permease compare
PS417_16850 -1.1 -1.3 cation:proton antiporter compare
PS417_01920 -1.1 -0.5 ATP-dependent protease subunit HslV compare
PS417_18455 -1.1 -1.3 hypothetical protein compare
PS417_27870 -1.1 -0.7 ATP-dependent DNA helicase RecG compare
PS417_20170 -1.1 -1.3 hypothetical protein compare
PS417_10865 -1.1 -1.2 GNAT family acetyltransferase compare
PS417_18640 -1.1 -2.0 hydrolase compare
PS417_27965 -1.1 -3.5 hypothetical protein compare
PS417_06500 -1.1 -0.7 hypothetical protein compare
PS417_21125 -1.1 -3.4 phosphoadenosine phosphosulfate reductase compare
PS417_19590 -1.1 -2.1 enoyl-CoA hydratase compare
PS417_25220 -1.0 -2.4 iron-hydroxamate ABC transporter substrate-binding protein compare
PS417_13135 -1.0 -2.4 hypothetical protein compare
PS417_05345 -1.0 -1.7 exotoxin compare
PS417_06165 -1.0 -1.6 thiamine biosynthesis protein ThiF compare
PS417_23160 -1.0 -1.9 50S rRNA methyltransferase compare
PS417_08185 -1.0 -2.4 glycosyl transferase compare
PS417_14915 -1.0 -1.6 host specificity protein compare
PS417_01715 -1.0 -0.7 hypothetical protein compare
PS417_09730 -1.0 -1.4 adenylylsulfate kinase compare
PS417_26800 -1.0 -4.0 cell division protein FtsX compare
PS417_17550 -1.0 -2.1 branched-chain alpha-ketoacid dehydrogenase, E1 component beta subunit (EC 1.2.4.4) (from data) compare
PS417_03155 -1.0 -2.6 transcriptional regulator compare
PS417_19085 -1.0 -2.6 hypothetical protein compare
PS417_01290 -1.0 -1.1 ADP-ribose diphosphatase compare
PS417_07410 -1.0 -1.7 hypothetical protein compare
PS417_02485 -1.0 -1.4 tRNA delta(2)-isopentenylpyrophosphate transferase compare
PS417_21430 -1.0 -0.7 3-oxoacyl-ACP synthase compare
PS417_08730 -1.0 -0.8 cytochrome C compare
PS417_10675 -1.0 -0.5 TetR family transcriptional regulator compare
PS417_04380 -1.0 -0.5 ABC transporter permease compare
PS417_17155 -1.0 -1.5 cytochrome B561 compare
PS417_26340 -1.0 -2.0 betaine-aldehyde dehydrogenase compare
PS417_05100 -1.0 -0.9 RNA polymerase sigma factor compare
PS417_27705 -1.0 -0.8 amino acid dehydrogenase compare
PS417_00160 -1.0 -2.5 2-dehydro-3-deoxy-6-phosphogalactonate aldolase compare
PS417_08950 -1.0 -1.5 DeoR faimly transcriptional regulator compare
PS417_27140 -1.0 -1.8 Gamma-glutamyl-putrescine synthetase (EC 6.3.1.11) (from data) compare
PS417_26815 -1.0 -1.1 peptidase M16 compare
PS417_23820 -1.0 -2.7 hypothetical protein compare
PS417_22450 -1.0 -0.4 ATP-dependent DNA helicase RuvA compare


Specific Phenotypes

For 4 genes in this experiment

For phage JP1 MOI 10 in Pseudomonas simiae WCS417

For phage JP1 MOI 10 across organisms