Experiment set24IT029 for Pseudomonas simiae WCS417

Compare to:

JP1 MOI 10

200 most important genes:

  gene name fitness t score description  
PS417_19800 -4.0 -1.9 flagellar motor switch protein FliG compare
PS417_08245 -4.0 -1.0 CDP-6-deoxy-L-threo-D-glycero-4-hexulose-3- dehydrase reductase compare
PS417_03930 -3.8 -7.8 thymidine phosphorylase compare
PS417_00370 -3.8 -0.9 hypothetical protein compare
PS417_02210 -3.7 -4.8 diguanylate cyclase compare
PS417_19625 -3.6 -4.3 histidine kinase compare
PS417_19630 -3.5 -2.3 LuxR family transcriptional regulator compare
PS417_26605 -3.3 -1.1 malonate decarboxylase subunit beta compare
PS417_24275 -3.2 -18.7 diguanylate phosphodiesterase compare
PS417_05985 -3.1 -2.1 chemotaxis protein CheY compare
PS417_21360 -3.0 -1.0 termination factor Rho compare
PS417_06540 -2.8 -1.6 membrane protein compare
PS417_23580 -2.8 -0.9 peptidylprolyl isomerase compare
PS417_20855 -2.7 -0.9 hypothetical protein compare
PS417_16715 -2.7 -1.5 DoxX family protein compare
PS417_19635 -2.7 -6.6 lipid kinase compare
PS417_02720 -2.6 -0.9 TetR family transcriptional regulator compare
PS417_24705 -2.6 -1.7 D-alanyl-D-alanine carboxypeptidase compare
PS417_23950 -2.6 -1.1 polynucleotide phosphorylase/polyadenylase compare
PS417_02555 -2.5 -12.5 exoribonuclease R compare
PS417_17000 -2.5 -2.9 MerR family transcriptional regulator compare
PS417_27195 -2.5 -0.8 N-acetylglutamate synthase compare
PS417_13165 -2.4 -2.6 peroxidase compare
PS417_20585 -2.4 -5.4 chemotaxis protein compare
PS417_08335 -2.4 -1.5 hypothetical protein compare
PS417_04475 -2.4 -2.8 hypothetical protein compare
PS417_20880 -2.4 -2.3 GntR family transcriptional regulator compare
PS417_17645 -2.2 -1.5 RND transporter compare
PS417_12355 -2.2 -2.0 magnesium chelatase compare
PS417_27290 -2.1 -2.1 hypothetical protein compare
PS417_04380 -2.1 -0.9 ABC transporter permease compare
PS417_20650 -2.1 -6.8 hypothetical protein compare
PS417_19805 -2.1 -2.8 flagellar M-ring protein FliF compare
PS417_12540 -2.0 -1.6 hypothetical protein compare
PS417_23715 -2.0 -2.3 cupin compare
PS417_08220 -2.0 -0.7 epimerase compare
PS417_18055 -2.0 -1.1 general secretion pathway protein GspK compare
PS417_07470 -1.9 -0.8 hypothetical protein compare
PS417_19605 -1.9 -0.9 hypothetical protein compare
PS417_11865 -1.9 -2.5 xylose isomerase compare
PS417_19955 -1.9 -1.2 hypothetical protein compare
PS417_19350 -1.9 -2.9 GTP cyclohydrolase compare
PS417_00630 -1.9 -3.5 nitrate ABC transporter substrate-binding protein compare
PS417_13620 -1.9 -1.2 thermostable hemolysin compare
PS417_08685 -1.9 -1.1 flagellar hook-length control protein FliK compare
PS417_22300 -1.9 -1.2 LTXXQ domain protein compare
PS417_21655 -1.9 -0.9 aspartate kinase compare
PS417_27300 -1.9 -0.8 cell division protein ZapA compare
PS417_24675 -1.9 -1.7 lipoyl synthase compare
PS417_13175 -1.9 -1.3 iron transporter compare
PS417_01920 -1.8 -0.6 ATP-dependent protease subunit HslV compare
PS417_08135 -1.8 -2.8 3-phosphoshikimate 1-carboxyvinyltransferase compare
PS417_02560 -1.8 -1.1 23S rRNA methyltransferase compare
PS417_17240 -1.7 -1.6 trigger factor compare
PS417_04440 -1.7 -1.5 hypoxanthine-guanine phosphoribosyltransferase compare
PS417_11225 -1.7 -3.3 glyoxalase compare
PS417_14805 -1.7 -1.4 AraC family transcriptional regulator compare
PS417_01435 -1.7 -1.0 hypothetical protein compare
PS417_04835 -1.6 -2.6 hemolysin D compare
PS417_09245 -1.6 -1.0 recombinase RdgC compare
PS417_03935 -1.6 -2.8 N-acetyl-anhydromuranmyl-L-alanine amidase compare
PS417_04875 -1.6 -1.0 molybdenum cofactor biosynthesis protein MoaE compare
PS417_16665 -1.6 -1.2 hypothetical protein compare
PS417_19270 -1.6 -1.4 hypothetical protein compare
PS417_22870 -1.6 -1.4 lipoprotein compare
PS417_22565 -1.6 -0.4 formyltetrahydrofolate deformylase compare
PS417_06835 -1.6 -2.1 phospholipase compare
PS417_08155 -1.6 -0.8 integration host factor subunit beta compare
PS417_23900 -1.6 -5.5 poly(A) polymerase compare
PS417_17755 -1.6 -1.6 hypothetical protein compare
PS417_20340 -1.5 -1.7 hypothetical protein compare
PS417_04650 -1.5 -0.5 D-alanine--D-alanine ligase compare
PS417_25895 -1.5 -1.4 glyoxalase compare
PS417_09200 -1.5 -2.6 ABC transporter compare
PS417_00085 -1.5 -1.7 16S rRNA methyltransferase compare
PS417_10445 -1.5 -2.4 LysR family transcriptional regulator compare
PS417_27865 -1.5 -2.2 LysR family transcriptional regulator compare
PS417_20025 -1.4 -0.9 alpha-ribazole phosphatase compare
PS417_12520 -1.4 -1.9 hypothetical protein compare
PS417_10050 -1.4 -1.9 hypothetical protein compare
PS417_03515 -1.4 -1.2 type III secretion protein compare
PS417_13895 -1.4 -1.5 chemotaxis protein CheB compare
PS417_20715 -1.4 -1.8 cytochrome Cbb3 compare
PS417_11510 -1.4 -1.0 AraC family transcriptional regulator compare
PS417_14315 -1.4 -1.8 2,5-dioxovalerate dehydrogenase compare
PS417_15100 -1.4 -1.2 BatB protein compare
PS417_02110 -1.4 -1.2 acyl carrier protein compare
PS417_15805 -1.4 -1.1 transporter compare
PS417_02740 -1.3 -1.7 LysR family transcriptional regulator compare
PS417_10335 -1.3 -1.7 peroxiredoxin compare
PS417_13300 -1.3 -1.3 short-chain dehydrogenase compare
PS417_04500 -1.3 -1.0 hypothetical protein compare
PS417_21400 -1.3 -2.6 TetR family transcriptional regulator compare
PS417_00755 -1.3 -0.5 biofilm PGA synthesis protein PgaD compare
PS417_12595 -1.3 -0.9 transcriptional regulator compare
PS417_00705 -1.3 -0.9 MarR family transcriptional regulator compare
PS417_12260 -1.3 -2.5 hypothetical protein compare
PS417_00845 -1.3 -1.2 transcriptional regulator compare
PS417_03045 -1.3 -0.9 hypothetical protein compare
PS417_15400 -1.3 -1.2 hypothetical protein compare
PS417_15915 -1.3 -1.1 hypothetical protein compare
PS417_15085 -1.3 -2.0 ATPase AAA compare
PS417_21355 -1.3 -1.5 hypothetical protein compare
PS417_03560 -1.3 -0.6 GTP-binding protein compare
PS417_17155 -1.3 -2.5 cytochrome B561 compare
PS417_17215 -1.3 -1.4 peptidylprolyl isomerase compare
PS417_07190 -1.3 -2.2 MFS transporter compare
PS417_00625 -1.3 -2.8 taurine dioxygenase compare
PS417_27935 -1.3 -0.8 type VI secretion protein compare
PS417_22410 -1.3 -3.6 hypothetical protein compare
PS417_17590 -1.3 -1.1 ABC transporter substrate-binding protein compare
PS417_27665 -1.3 -2.7 diguanylate cyclase compare
PS417_22190 -1.3 -4.2 diguanylate cyclase compare
PS417_20635 -1.3 -0.7 ABC transporter ATP-binding protein compare
PS417_23205 -1.2 -2.8 transcriptional regulator compare
PS417_26900 -1.2 -0.8 L-cystine transporter tcyP compare
PS417_27870 -1.2 -0.8 ATP-dependent DNA helicase RecG compare
PS417_19620 -1.2 -1.0 hypothetical protein compare
PS417_02475 -1.2 -1.7 N-acetylmuramoyl-L-alanine amidase compare
PS417_23825 -1.2 -3.7 penicillin-binding protein compare
PS417_11405 -1.2 -1.8 precorrin 6A synthase compare
PS417_19305 -1.2 -2.4 acireductone dioxygenase compare
PS417_18915 -1.2 -1.7 hypothetical protein compare
PS417_04800 -1.2 -1.1 alginate O-acetyltransferase compare
PS417_04340 -1.2 -2.7 ribosome hibernation promoting factor HPF compare
PS417_20610 -1.2 -0.7 hypothetical protein compare
PS417_16845 -1.2 -1.4 monovalent cation/H+ antiporter subunit E compare
PS417_27585 -1.2 -1.0 diaminopimelate epimerase compare
PS417_19615 -1.2 -2.2 chemotaxis protein CheW compare
PS417_01915 -1.2 -0.3 ATP-dependent protease ATP-binding subunit HslU compare
PS417_12455 -1.2 -1.6 hydrolase compare
PS417_14925 -1.2 -1.1 2-methylcitrate dehydratase compare
PS417_11475 -1.2 -2.1 membrane protein compare
PS417_14655 -1.2 -0.6 lysine transporter LysE compare
PS417_23520 -1.2 -2.9 cysteine biosynthesis protein CysZ compare
PS417_18200 -1.2 -1.6 glyoxalase compare
PS417_17440 -1.1 -1.3 beta-lactamase compare
PS417_18990 -1.1 -2.0 membrane protein compare
PS417_26050 -1.1 -2.3 response regulator compare
PS417_13195 -1.1 -1.4 RND transporter MFP subunit compare
PS417_00190 -1.1 -1.5 LysR family transcriptional regulator compare
PS417_19600 -1.1 -0.7 exonuclease compare
PS417_11350 -1.1 -1.6 biopolymer transporter ExbB compare
PS417_16310 -1.1 -2.6 membrane protein compare
PS417_27640 -1.1 -0.7 TetR family transcriptional regulator compare
PS417_03455 -1.1 -0.9 type III secretion protein compare
PS417_08230 -1.1 -0.9 lipopolysaccharide biosynthesis protein RfbH compare
PS417_18205 -1.1 -1.2 aldehyde dehydrogenase compare
PS417_11615 -1.1 -0.9 urea ABC transporter ATP-binding protein compare
PS417_14605 -1.1 -1.7 adenylate kinase compare
PS417_14540 -1.1 -0.8 cytochrome C oxidase subunit III compare
PS417_11945 -1.1 -1.7 hypothetical protein compare
PS417_22450 -1.1 -0.4 ATP-dependent DNA helicase RuvA compare
PS417_17925 -1.1 -1.5 acyl-CoA dehydrogenase compare
PS417_19720 -1.1 -0.8 DNA-binding protein compare
PS417_03510 -1.1 -1.9 type III secretion system negative regulatory protein RspV compare
PS417_01750 -1.1 -1.5 histidine ammonia-lyase compare
PS417_05905 -1.1 -1.4 hypothetical protein compare
PS417_17120 -1.1 -2.1 protein kinase compare
PS417_26295 -1.1 -2.3 gamma-butyrobetaine dioxygenase compare
PS417_19095 -1.1 -0.8 hypothetical protein compare
PS417_18105 -1.1 -0.8 iron-dicitrate transporter substrate-binding subunit compare
PS417_02615 -1.1 -2.3 transglutaminase compare
PS417_10985 -1.1 -0.6 NADH:flavin oxidoreductase compare
PS417_02485 -1.1 -2.1 tRNA delta(2)-isopentenylpyrophosphate transferase compare
PS417_04290 -1.1 -1.5 hypothetical protein compare
PS417_07820 -1.1 -1.0 transposase compare
PS417_11735 -1.1 -2.8 methionine gamma-lyase compare
PS417_07095 -1.1 -2.9 histidine kinase compare
PS417_04940 -1.0 -3.0 outer membrane usher protein compare
PS417_26260 -1.0 -0.7 hypothetical protein compare
PS417_12175 -1.0 -2.1 peptide ABC transporter permease compare
PS417_15005 -1.0 -1.6 hypothetical protein compare
PS417_22205 -1.0 -4.0 potassium transporter TrkH compare
PS417_09440 -1.0 -1.2 MerR family transcriptional regulator compare
PS417_09470 -1.0 -0.7 hypothetical protein compare
PS417_13660 -1.0 -1.8 AsnC family transcriptional regulator compare
PS417_09730 -1.0 -1.5 adenylylsulfate kinase compare
PS417_11080 -1.0 -1.5 dehydrogenase compare
PS417_04390 -1.0 -1.9 toluene tolerance protein compare
PS417_09675 -1.0 -3.5 alpha/beta hydrolase compare
PS417_26990 -1.0 -0.3 RNA pyrophosphohydrolase compare
PS417_21780 -1.0 -1.4 argininosuccinate lyase compare
PS417_17845 -1.0 -1.8 3,4-dihydroxyphenylacetate 2,3-dioxygenase compare
PS417_24225 -1.0 -1.3 hypothetical protein compare
PS417_03740 -1.0 -1.5 peptidylprolyl isomerase compare
PS417_13245 -1.0 -1.9 saccharopine dehydrogenase compare
PS417_22375 -1.0 -0.5 cold-shock protein compare
PS417_16510 -1.0 -2.2 Clp protease ClpX compare
PS417_08185 -1.0 -1.6 glycosyl transferase compare
PS417_19420 -1.0 -2.0 OHCU decarboxylase compare
PS417_26850 -1.0 -0.5 twin-arginine translocation pathway signal protein compare
PS417_11545 -1.0 -2.3 spermidine/putrescine ABC transporter substrate-binding protein compare
PS417_08190 -1.0 -4.6 membrane protein compare
PS417_03495 -1.0 -1.5 type III secretory protein EscS compare
PS417_14555 -1.0 -1.4 AsnC family transcriptional regulator compare
PS417_14645 -1.0 -3.1 hypothetical protein compare
PS417_14075 -1.0 -0.9 hypothetical protein compare
PS417_13075 -1.0 -0.6 hypothetical protein compare
PS417_20170 -1.0 -1.5 hypothetical protein compare


Specific Phenotypes

For 1 genes in this experiment

For phage JP1 MOI 10 in Pseudomonas simiae WCS417

For phage JP1 MOI 10 across organisms