Experiment set24IT020 for Pseudomonas putida KT2440

Compare to:

Soil=PNNL_Prosser_PlotA_B_20191220; Sterility=sterile; Collection=outgrowth_in_LB; SoilTreatment=coldshock; SoilTreatmentTime=0_hrs

200 most detrimental genes:

  gene name fitness t score description  
PP_1656 +1.7 7.6 ATP:GTP 3'-pyrophosphotransferase compare
PP_1237 +1.6 1.9 4-hydroxy-tetrahydrodipicolinate synthase compare
PP_1650 +1.5 8.1 Sensor protein GacS compare
PP_1269 +1.4 2.2 Universal stress protein family compare
PP_1655 +1.4 6.0 23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD compare
PP_4099 +1.3 6.7 two-componenent system BarA/UvrY - regulatory subunit compare
PP_1562 +1.2 3.4 putative Phage terminase, small subunit compare
PP_4196 +1.2 2.7 conserved exported protein of unknown function compare
PP_3726 +1.2 2.3 Enoyl-CoA hydratase/isomerase family protein compare
PP_0593 +1.1 1.6 putative ribosome-binding factor compare
PP_1713 +1.1 2.0 Transcriptional regulator PcaQ compare
PP_0575 +1.1 2.1 conserved membrane protein of unknown function compare
PP_5008 +1.1 2.2 Poly granule-associated protein compare
PP_5471 +0.9 1.8 putative response regulator receiver protein compare
PP_0916 +0.9 2.1 Amino acid transporter LysE compare
PP_1048 +0.9 2.7 putative protein secretion protein for export compare
PP_3398 +0.9 2.0 putative Curli fiber surface-exposed nucleator CsgB compare
PP_4531 +0.9 3.4 conserved exported protein of unknown function compare
PP_3904 +0.9 2.2 conserved protein of unknown function compare
PP_1787 +0.9 2.4 conserved protein of unknown function compare
PP_3971 +0.9 1.7 conserved protein of unknown function compare
PP_0685 +0.8 1.5 conserved protein of unknown function compare
PP_4251 +0.8 2.5 cytochrome c oxidase subunit, cbb3-type compare
PP_4797 +0.8 1.8 conserved protein of unknown function compare
PP_2462 +0.8 0.9 conserved protein of unknown function compare
PP_4073 +0.8 2.1 conserved exported protein of unknown function compare
PP_2110 +0.8 2.5 putative ribosomal large subunit pseudouridine synthase compare
PP_1855 +0.8 2.0 conserved exported protein of unknown function compare
PP_4133 +0.8 1.8 Transcriptional regulator-related protein compare
PP_2309 +0.8 1.2 conserved protein of unknown function compare
PP_5603 +0.8 3.8 putative FAD dependent oxidoreductase compare
PP_2976 +0.8 0.7 putative transposase compare
PP_4238 +0.7 2.5 conserved protein of unknown function compare
PP_5628 +0.7 2.8 conserved protein of unknown function compare
PP_0948 +0.7 1.6 Phosphocarrier protein HPr compare
PP_5549 +0.7 2.5 conserved protein of unknown function compare
PP_0241 +0.7 1.1 Transporter compare
PP_4808 +0.7 1.1 23S rRNA m3psi1915 methyltransferase compare
PP_1054 +0.7 1.7 Type II secretion pathway protein XcpZ compare
PP_0566 +0.7 1.1 translation-related factor compare
PP_1390 +0.7 1.7 conserved exported protein of unknown function compare
PP_4409 +0.7 2.6 Site-specific recombinase, phage integrase family compare
PP_4517 +0.7 1.1 conserved protein of unknown function compare
PP_1691 +0.7 1.6 conserved protein of unknown function compare
PP_1190 +0.7 2.9 conserved protein of unknown function compare
PP_4607 +0.7 3.9 putative Transmembrane sensor compare
PP_2747 +0.7 1.3 conserved protein of unknown function compare
PP_0319 +0.7 1.1 conserved protein of unknown function compare
PP_2023 +0.6 2.5 Glutathione S-transferase family protein compare
PP_3185 +0.6 2.6 Pet18 protein compare
PP_5571 +0.6 0.9 conserved protein of unknown function compare
PP_0874 +0.6 1.4 conserved protein of unknown function compare
PP_3312 +0.6 0.8 putative Heat shock protein compare
PP_0608 +0.6 2.3 putative type 4 fimbrial biogenesis protein compare
PP_1903 +0.6 1.4 putative phosphotyrosine-protein phosphatase compare
PP_3685 +0.6 2.6 conserved protein of unknown function compare
PP_1186 +0.6 1.2 two component system DNA-binding transcriptional dual regulator compare
PP_1045 +0.6 1.2 Type II secretion pathway protein XcpP compare
PP_3407 +0.6 1.6 conserved protein of unknown function compare
PP_5460 +0.6 2.1 conserved membrane protein of unknown function compare
PP_2159 +0.6 2.7 Copper-binding protein, plastocyanin/azurin family compare
PP_5054 +0.6 1.0 glutaredoxin 3 compare
PP_5311 +0.6 3.6 putative signal transduction protein compare
PP_4561 +0.6 0.7 stress response protein compare
PP_0794 +0.6 1.6 1-phosphofructokinase monomer compare
PP_1122 +0.6 1.4 OmpA family protein compare
PP_1218 +0.6 1.9 putative acyl-CoA thioesterase compare
PP_4132 +0.6 2.3 conserved protein of unknown function compare
PP_2592 +0.6 1.5 Ferric siderophore ABC transporter, ATP-binding protein compare
PP_2260 +0.6 2.3 putative glycerol-phosphate ABC transporter, ATP-binding protein compare
PP_2581 +0.6 1.0 conserved protein of unknown function compare
PP_3824 +0.6 0.9 conserved exported protein of unknown function compare
PP_5478 +0.6 2.4 conserved protein of unknown function compare
PP_5552 +0.6 1.1 conserved protein of unknown function compare
PP_5229 +0.6 2.0 conserved protein of unknown function compare
PP_5528 +0.5 0.8 conserved protein of unknown function compare
PP_4982 +0.5 2.1 putative cytochrome b561, iron-regulated compare
PP_3444 +0.5 1.9 Glyoxalase family protein compare
PP_1494 +0.5 2.8 Response regulator/GGDEF domain protein compare
PP_2972 +0.5 1.2 conserved protein of unknown function compare
PP_3617 +0.5 2.3 conserved membrane protein of unknown function compare
PP_0653 +0.5 1.0 conserved protein of unknown function compare
PP_0905 +0.5 0.4 conserved exported protein of unknown function compare
PP_4143 +0.5 1.4 conserved protein of unknown function compare
PP_3197 +0.5 1.7 Glyoxalase family protein compare
PP_1605 +0.5 1.6 Ribonuclease HII compare
PP_2768 +0.5 2.3 putative Branched-chain amino acid ABC transporter, permease protein compare
PP_5610 +0.5 1.1 protein of unknown function compare
PP_3908 +0.5 1.8 conserved protein of unknown function compare
PP_0220 +0.5 1.2 methionine import ATP-binding protein metN2 compare
PP_3110 +0.5 0.5 protein of unknown function compare
PP_5422 +0.5 1.1 hypothetical protein compare
PP_3144 +0.5 2.0 L-serine dehydratase compare
PP_0536 +0.5 1.3 conserved protein of unknown function compare
PP_1987 +0.5 1.3 Methlytransferase, UbiE/COQ5 family compare
PP_3762 +0.5 1.7 Response regulator compare
PP_1552 +0.5 1.3 putative Phage replication protein compare
PP_1936 +0.5 3.2 conserved membrane protein of unknown function compare
PP_t57 +0.5 1.4 tRNA-Arg compare
PP_5223 +0.5 1.4 regulator of nucleotide diphosphokinase compare
PP_0579 +0.5 2.1 conserved protein of unknown function compare
PP_1890 +0.5 2.3 Type 1 pili chaperone protein FimC compare
PP_3228 +0.5 2.0 putative Periplasmic aliphatic sulfonate-binding protein compare
PP_2970 +0.5 1.2 conserved exported protein of unknown function compare
PP_5446 +0.5 1.9 protein of unknown function compare
PP_4631 +0.5 1.6 conserved protein of unknown function compare
PP_0223 +0.5 2.4 Monooxygenase, DszC family compare
PP_4568 +0.5 2.1 putative metabolite efflux pump compare
PP_5623 +0.5 2.0 conserved membrane protein of unknown function compare
PP_2046 +0.5 1.0 Transcriptional regulator, LysR family compare
PP_2397 +0.5 1.5 EF hand domain protein compare
PP_5236 +0.5 2.2 conserved protein of unknown function compare
PP_1574 +0.5 2.5 conserved protein of unknown function compare
PP_5675 +0.5 1.3 conserved protein of unknown function compare
PP_2536 +0.5 1.9 Glutathione S-transferase family protein compare
PP_2615 +0.5 1.4 hemolysin-coregulated protein compare
PP_4656 +0.5 2.2 protocatechuate 3,4-dioxygenase beta chain compare
PP_3705 +0.5 2.0 conserved membrane protein of unknown function compare
PP_5098 +0.5 2.0 methionine biosynthesis protein MetW compare
PP_0210 +0.5 1.8 putative Phycobiliprotein compare
PP_0649 +0.5 1.7 MutT/nudix family protein compare
PP_4217 +0.5 3.9 outer membrane ferripyoverdine receptor FpvA, TonB-dependent compare
PP_0921 +0.5 1.5 Transcriptional regulator, ArsR family compare
PP_3328 +0.5 1.2 putative Ring-cleaving dioxygenase compare
PP_1501 +0.5 2.0 conserved protein of unknown function compare
PP_0440 +0.5 1.0 Elongation factor Tu-A compare
PP_0999 +0.5 0.9 carbamate kinase compare
PP_0611 +0.5 2.2 Type IV pili biogenesis protein PilE compare
PP_2894 +0.5 1.9 conserved protein of unknown function compare
PP_3506 +0.5 1.5 Magnesium chelatase, subunit ChII compare
PP_0878 +0.5 2.7 dipeptide ABC transporter, binding subunit compare
PP_5500 +0.5 1.0 protein of unknown function compare
PP_5670 +0.5 1.4 conserved protein of unknown function compare
PP_4957 +0.5 1.0 conserved protein of unknown function compare
PP_2506 +0.5 1.3 conserved membrane protein of unknown function compare
PP_5669 +0.5 2.3 ABC transporter related compare
PP_0425 +0.5 1.7 conserved protein of unknown function compare
PP_1938 +0.5 0.4 conserved protein of unknown function compare
PP_4451 +0.5 1.3 conserved protein of unknown function compare
PP_3892 +0.5 0.6 conserved protein of unknown function compare
PP_5136 +0.5 3.0 ABC transporter, permease protein compare
PP_3116 +0.5 1.3 transcriptional repressor compare
PP_2209 +0.4 2.0 2-aminoethylphosphonate--pyruvate transaminase compare
PP_5017 +0.4 0.7 Sec-independent protein translocase protein TatB compare
PP_1742 +0.4 1.5 conserved inner membrane protein of unknown function compare
PP_5485 +0.4 2.5 putative N-acetyltransferase, GNAT domain compare
PP_1051 +0.4 1.7 Type II secretion pathway protein XcpV compare
PP_4452 +0.4 1.8 NAD/NADP octopine/nopaline dehydrogenase family protein compare
PP_0534 +0.4 1.7 putative Transcriptional regulator PfeR compare
PP_0787 +0.4 1.0 quinolinate phosphoribosyltransferase (decarboxylating) monomer compare
PP_2990 +0.4 1.6 Transcriptional regulator, MerR family compare
PP_5066 +0.4 1.4 K(+)/H(+) antiporter NhaP2 compare
PP_1020 +0.4 1.1 putative glucose-6-phosphate 1-epimerase compare
PP_0202 +0.4 1.2 CBS domain-containing protein compare
PP_5457 +0.4 1.4 conserved protein of unknown function compare
PP_2499 +0.4 0.8 conserved protein of unknown function compare
PP_2751 +0.4 1.6 conserved exported protein of unknown function compare
PP_4249 +0.4 1.8 conserved protein of unknown function compare
PP_1082 +0.4 1.9 bacterioferritin compare
PP_4921 +0.4 2.3 Transporter, NCS1 nucleoside transporter family compare
PP_3567 +0.4 2.0 Transcriptional regulator, LysR family compare
PP_0357 +0.4 1.3 ACT domain protein compare
PP_1649 +0.4 0.9 D-lactate dehydrogenase compare
PP_1477 +0.4 1.8 ssDNA-specific exonuclease RecJ compare
PP_5388 +0.4 1.8 probable exported copper efflux protein compare
PP_2999 +0.4 0.7 Glyoxalase family protein compare
PP_3243 +0.4 1.1 Acetyltransferase, GNAT family compare
PP_5490 +0.4 1.7 site-specific DNA recombinase compare
PP_2543 +0.4 2.5 gamma-aminobutyrate permease compare
PP_3676 +0.4 2.1 conserved protein of unknown function compare
PP_2764 +0.4 1.0 FMN reductase (NADPH) compare
PP_5708 +0.4 1.8 protein of unknown function compare
PP_1659 +0.4 2.0 conserved exported protein of unknown function compare
PP_1005 +0.4 1.2 Heme oxygenase compare
PP_1679 +0.4 0.9 Nicotinate-nucleotide--dimethylbenzimidazole phosphoribosyltransferase compare
PP_1415 +0.4 1.4 putative membrane associated enzyme subunit compare
PP_2482 +0.4 2.3 putative Molybdenum cofactor biosynthesis protein A compare
PP_4450 +0.4 2.1 Phosphoglycerate mutase family protein compare
PP_3034 +0.4 0.7 putative Regulator protein compare
PP_2305 +0.4 1.5 conserved protein of unknown function compare
PP_4503 +0.4 0.9 DNA-binding response regulator compare
PP_4159 +0.4 0.5 Potassium-transporting ATPase C chain compare
PP_1930 +0.4 0.8 arsenic resistance transcriptional regulator compare
PP_5674 +0.4 1.1 conserved protein of unknown function compare
PP_0807 +0.4 1.8 DNA-binding transcriptional dual regulator (NO) compare
PP_2532 +0.4 1.8 conserved protein of unknown function compare
PP_1633 +0.4 1.5 conserved exported protein of unknown function compare
PP_4246 +0.4 2.3 Periplasmic binding protein compare
PP_1568 +0.4 0.6 conserved protein of unknown function compare
PP_2836 +0.4 1.0 putative 2-keto-3-deoxyxylonate dehydratase compare
PP_3216 +0.4 1.9 putative cysteine dioxygenase compare
PP_0939 +0.4 1.2 Carbon-nitrogen hydrolase family protein compare
PP_4558 +0.4 2.1 Acetyltransferase, GNAT family compare
PP_2060 +0.4 0.8 DNA-binding transcriptional dual regulator - SoxR-reversible one-electron oxidation of its [2Fe-2S] cluster, NADPH-dependent compare
PP_4502 +0.4 1.8 putative enzyme compare
PP_5491 +0.4 0.9 conserved protein of unknown function with SEC-C motif domain compare
PP_4616 +0.4 1.6 conserved protein of unknown function compare
PP_2071 +0.4 1.5 conserved protein of unknown function compare
PP_3492 +0.4 2.0 isobutyryl-CoA dehydrogenase (EC 1.3.8.5) (from data) compare
PP_4813 +0.4 1.7 PAP2 family protein/DedA family protein compare


Specific Phenotypes

None in this experiment

For Pseudomonas putida KT2440 in soil experiments

For soil Soil=PNNL_Prosser_PlotA_B_20191220; Sterility=sterile; Collection=outgrowth_in_LB; SoilTreatment=coldshock; SoilTreatmentTime=0_hrs across organisms