Experiment set23S659 for Agrobacterium fabrum C58

P4L4

Group: no phage
Media: Plant=Ntabacum; PlantTreatment=None; Sample=leaf; GrowthSubstrate=agar; Collection=Direct + Plant=Ntabacum; PlantTreatment=None; Sample=leaf; GrowthSubstrate=agar; Collection=Direct
Culturing: Agro_ML11a, in planta, at 25C (C), (in planta)
By: Mo on 10/10/2024

Specific Phenotypes

For 3 genes in this experiment

For no phage Plant=Ntabacum; PlantTreatment=None; Sample=leaf; GrowthSubstrate=agar; Collection=Direct in Agrobacterium fabrum C58

For no phage Plant=Ntabacum; PlantTreatment=None; Sample=leaf; GrowthSubstrate=agar; Collection=Direct across organisms

SEED Subsystems

Subsystem	#Specific
Arginine and Ornithine Degradation	1
Glycerol and Glycerol-3-phosphate Uptake and Utilization	1

Metabolic Maps

Color code by fitness: see overview map or list of maps.

Maps containing gene(s) with specific phenotypes:

• Arginine and proline metabolism
• Glycerophospholipid metabolism

MetaCyc Pathways

Pathways that contain genes with specific phenotypes:

Pathway	#Steps	#Present	#Specific
L-ornithine degradation I (L-proline biosynthesis)	1	1	1
L-arginine degradation VII (arginase 3 pathway)	2	2	1
glycerophosphodiester degradation	2	2	1
L-proline biosynthesis II (from arginine)	2	1	1
phosphatidylcholine resynthesis via glycerophosphocholine	2	1	1
glycerol and glycerophosphodiester degradation	4	3	1
phospholipid remodeling (phosphatidylethanolamine, yeast)	4	2	1
anandamide biosynthesis I	12	3	1