Experiment set23IT079 for Pseudomonas putida KT2440

Compare to:

Soil=PNNL_Prosser_PlotA_B_20191220; Sterility=sterile; Collection=outgrowth_in_LB_2hrs_then_extra_outgrowth_in_LB; SoilTreatment=coldshock; SoilTreatmentTime=144_hrs

200 most important genes:

  gene name fitness t score description  
PP_1623 -7.4 -11.2 RNA polymerase, sigma S (sigma 38) factor compare
PP_0293 -6.0 -4.1 Imidazole glycerol phosphate synthase subunit HisF compare
PP_3484 -5.3 -7.8 Response regulator receiver protein compare
PP_0164 -5.2 -3.6 conserved protein of unknown function compare
PP_4342 -4.5 -3.1 flagellar synthesis regulator, putative ATPase compare
PP_4058 -4.1 -12.5 1,4-alpha-glucan branching enzyme compare
PP_1898 -3.8 -4.5 MotA/TolQ/ExbB proton channel family protein compare
PP_4902 -3.7 -4.4 Oligoribonuclease compare
PP_5289 -3.6 -5.5 Acetylglutamate kinase compare
PP_1986 -3.6 -5.5 3-isopropylmalate dehydratase small subunit compare
PP_0951 -3.4 -9.6 Ribosome hibernation promoting factor compare
PP_1088 -3.4 -11.2 Argininosuccinate synthase compare
PP_3833 -3.4 -6.7 Response regulator compare
PP_5014 -3.4 -5.1 Phosphoribosyl-AMP cyclohydrolase compare
PP_1985 -3.3 -7.1 3-isopropylmalate dehydratase large subunit compare
PP_1215 -3.2 -2.9 Crossover junction endodeoxyribonuclease RuvC compare
PP_5015 -3.2 -5.8 phosphoribosyl-ATP pyrophosphatase (EC 3.6.1.31) (from data) compare
PP_4726 -3.1 -3.8 Chaperone protein DnaJ compare
PP_0966 -3.0 -10.3 Histidinol dehydrogenase compare
PP_4122 -2.9 -2.0 proton-pumping NADH:ubiquinone oxidoreductase, respiratory complex I, subunit E compare
PP_0290 -2.8 -7.5 Imidazole glycerol phosphate synthase subunit HisH compare
PP_5185 -2.8 -6.2 acetylglutamate kinase-like protein (regulatory domain)/amino acid N-acetyltransferase compare
PP_0184 -2.8 -5.6 Argininosuccinate lyase compare
PP_0967 -2.8 -8.8 histidinol-phosphate aminotransferase (EC 2.6.1.9) (from data) compare
PP_4994 -2.6 -4.7 conserved protein of unknown function compare
PP_4679 -2.5 -6.6 acetohydroxybutanoate synthase / acetolactate synthase compare
PP_1493 -2.5 -3.8 chemotaxis response regulator protein-glutamate methylesterase of group 3 operon compare
PP_4874 -2.5 -1.7 50S ribosomal protein L9 compare
PP_0289 -2.5 -9.3 Imidazoleglycerol-phosphate dehydratase compare
PP_4143 -2.5 -5.2 conserved protein of unknown function compare
PP_1778 -2.5 -9.1 Lipopolysaccharide ABC export system, permease protein compare
PP_5309 -2.5 -1.7 oxidative and nitrosative stress transcriptional dual regulator compare
PP_0292 -2.4 -4.3 1-(5-phosphoribosyl)-5-((5-phosphoribosylamino)methylideneamino)imidazole-4-carboxamide isomerase (EC 5.3.1.16) (from data) compare
PP_0914 -2.4 -11.3 GGDEF domain protein compare
PP_1733 -2.4 -3.2 membrane ATPase of the MinC-MinD-MinE system compare
PP_1734 -2.3 -3.4 Probable septum site-determining protein MinC compare
PP_0965 -2.3 -10.4 ATP phosphoribosyltransferase (EC 2.4.2.17) (from data) compare
PP_4880 -2.3 -10.2 exoribonuclease R compare
PP_1988 -2.2 -9.1 3-isopropylmalate dehydrogenase compare
PP_2820 -2.2 -4.1 HTH-type transcriptional regulator nfxB compare
PP_2214 -2.2 -5.1 3-hydroxyacyl-CoA dehydrogenase type-2 compare
PP_5502 -2.2 -7.3 ribosome modulation factor compare
PP_1906 -2.2 -5.9 ribosomal large subunit pseudouridine synthase C compare
PP_0397 -2.1 -12.7 protein kinase compare
PP_0396 -2.1 -12.2 conserved protein of unknown function compare
PP_0395 -2.1 -11.0 putative type IV piliation protein compare
PP_4890 -2.1 -3.9 ATP phosphoribosyltransferase regulatory subunit compare
PP_5128 -2.1 -7.8 Dihydroxy-acid dehydratase compare
PP_4678 -2.0 -12.2 Ketol-acid reductoisomerase compare
PP_4124 -2.0 -3.3 NADH-quinone oxidoreductase subunit G compare
PP_5145 -2.0 -14.9 phosphoenolpyruvate-dependent regulator (with NPR and NTR proteins) compare
PP_4680 -2.0 -11.3 acetohydroxybutanoate synthase / acetolactate synthase compare
PP_4120 -1.8 -1.8 NADH-quinone oxidoreductase subunit B compare
PP_1779 -1.8 -6.3 Lipopolysaccharide ABC export system, ATP-binding protein compare
PP_2903 -1.8 -3.4 peptidyl-prolyl cis-trans isomerase B (rotamase B) compare
PP_1025 -1.8 -10.7 2-isopropylmalate synthase compare
PP_4131 -1.8 -3.8 NADH-quinone oxidoreductase subunit N compare
PP_3511 -1.8 -7.8 Branched-chain-amino-acid aminotransferase compare
PP_4891 -1.8 -4.5 integral membrane ATP-dependent zinc metallopeptidase / HflK-HflC complex compare
PP_5216 -1.8 -1.7 exopolyphosphatase compare
PP_2862 -1.8 -6.9 Undecaprenyl-diphosphatase compare
PP_0001 -1.8 -1.9 probable chromosome-partitioning protein compare
PP_1198 -1.8 -2.4 transcriptional regulator, Cro/CI family (higA antitoxin like) compare
PP_4941 -1.7 -6.5 conserved exported protein of unknown function compare
PP_4368 -1.7 -5.2 flagellar motor switch protein compare
PP_4375 -1.7 -7.1 flagellar chaperone, inhibits premature FliC assembly compare
PP_1783 -1.7 -1.6 dTDP-glucose pyrophosphorylase compare
PP_1317 -1.7 -4.0 Ubiquinol-cytochrome c reductase iron-sulfur subunit compare
PP_1826 -1.7 -2.7 Hydrolase, isochorismatase family compare
PP_4546 -1.7 -3.9 ATP-dependent helicase HrpA compare
PP_2402 -1.6 -2.2 putative Sensor histidine kinase compare
PP_4369 -1.6 -8.0 Flagellar M-ring protein compare
PP_1994 -1.6 -2.1 tRNA pseudouridine (38-40)synthase compare
PP_1328 -1.6 -2.1 Protein MraZ compare
PP_4008 -1.6 -6.1 ATP-dependent serine protease compare
PP_1099 -1.6 -2.8 Cold shock protein CapB compare
PP_0435 -1.6 -7.1 Peptidase, M23/M37 family compare
PP_4356 -1.6 -4.2 Flagellar protein FliO compare
PP_3198 -1.6 -1.9 Ferredoxin, 2Fe-2S compare
PP_4353 -1.6 -7.2 Flagellar biosynthetic protein fliR compare
PP_0949 -1.6 -5.3 putative ATP-binding protein UPF0042 compare
PP_2217 -1.5 -2.4 enoyl-CoA hydratase compare
PP_4358 -1.5 -4.8 flagellar synthesis, switching and energizing component compare
PP_4396 -1.5 -5.0 conserved protein of unknown function compare
PP_4263 -1.5 -2.8 putative membrane-bounded cytochrome biogenesis cycZ-like domain, copper tolerance protein compare
PP_1691 -1.5 -2.6 conserved protein of unknown function compare
PP_4378 -1.5 -10.5 flagellin, filament structural protein compare
PP_4344 -1.5 -8.2 flagellar export pore protein compare
PP_4379 -1.5 -3.8 Beta-ketoacyl-acyl-carrier-protein synthase I compare
PP_2378 -1.5 -2.6 Fe/S biogenesis protein NfuA compare
PP_5217 -1.5 -10.8 Polyphosphate kinase compare
PP_5514 -1.5 -1.2 conserved protein of unknown function compare
PP_2327 -1.5 -3.8 transcriptional dual regulator / CysB-O-acetyl-L-serine compare
PP_2348 -1.5 -4.9 Sensor histidine kinase compare
PP_1079 -1.5 -4.0 Ornithine carbamoyltransferase compare
PP_4380 -1.5 -10.3 Flagellar hook-associated protein FlgL compare
PP_4937 -1.5 -4.8 toluene tolerance protein compare
PP_5347 -1.5 -7.6 pyruvate carboxylase subunit A compare
PP_5090 -1.5 -3.6 putative cell division protein compare
PP_5350 -1.5 -3.4 Transcriptional regulator, RpiR family compare
PP_0291 -1.4 -3.4 conserved protein of unknown function compare
PP_0735 -1.4 -1.9 molybdopterin-synthase adenylyltransferase compare
PP_4944 -1.4 -2.7 Carbamoyltransferase compare
PP_4892 -1.4 -4.8 integral membrane ATP-dependent zinc metallopeptidase / HflK-HflC complex compare
PP_0065 -1.4 -3.2 NAD-binding component of TrK potassium transporter compare
PP_5028 -1.4 -3.0 proline iminopeptidase compare
PP_5652 -1.4 -2.1 conserved protein of unknown function, phage origin compare
PP_4471 -1.4 -3.3 Magnesium transporter compare
PP_4942 -1.4 -2.9 conserved protein of unknown function compare
PP_1428 -1.4 -1.8 Sigma factor AlgU negative regulatory protein compare
PP_4364 -1.4 -4.1 putative Anti-sigma F factor antagonist compare
PP_4696 -1.4 -3.7 Nitrogen regulation protein NR(I) compare
PP_5328 -1.4 -2.2 putative phosphate transport system permease protein compare
PP_4381 -1.4 -8.9 Flagellar hook-associated protein FlgK compare
PP_1318 -1.4 -5.1 Cytochrome b compare
PP_0368 -1.4 -9.2 putative Acyl-CoA dehydrogenase compare
PP_4785 -1.3 -5.6 conserved exported protein of unknown function compare
PP_4354 -1.3 -2.5 flagellar export apparatus subunit compare
PP_4366 -1.3 -8.5 flagellum-specific ATP synthase compare
PP_4121 -1.3 -3.7 NADH-quinone oxidoreductase subunit C/D compare
PP_4129 -1.3 -2.7 NADH:ubiquinone oxidoreductase, membrane subunit L compare
PP_5146 -1.3 -6.6 RNA pyrophosphohydrolase compare
PP_t10 -1.3 -0.9 tRNA-Pro compare
PP_4066 -1.3 -2.8 methylglutaconyl-CoA hydratase compare
PP_0832 -1.3 -3.3 S-adenosylmethionine:tRNA ribosyltransferase-isomerase compare
PP_1217 -1.3 -4.2 Holliday junction ATP-dependent DNA helicase RuvB compare
PP_4384 -1.3 -6.5 Flagellar L-ring protein compare
PP_2337 -1.3 -1.9 aconitate isomerase compare
PP_2302 -1.2 -3.7 DNA-binding, ATP-dependent protease compare
PP_1224 -1.2 -5.5 periplasmic subunit of the TolQRA transport system compare
PP_3105 -1.2 -2.9 conserved membrane protein of unknown function compare
PP_0888 -1.2 -2.2 Photosynthetic apparatus regulatory protein RegA compare
PP_4365 -1.2 -3.7 Flagellar protein FliJ compare
PP_4126 -1.2 -1.2 NADH-quinone oxidoreductase subunit I compare
PP_4065 -1.2 -6.8 methylcrotonyl-CoA carboxylase biotin-containing subunit beta compare
PP_4398 -1.2 -7.7 Major facilitator family transporter compare
PP_1764 -1.2 -2.5 Phosphoglycolate phosphatase 2 compare
PP_1355 -1.2 -7.0 Muropeptide permease AmpG compare
PP_4382 -1.2 -5.4 Peptidoglycan hydrolase FlgJ compare
PP_4376 -1.2 -7.2 flagellar filament capping protein compare
PP_4361 -1.2 -4.9 Flagellar hook-length control protein FliK compare
PP_0218 -1.2 -6.0 Sensory box protein compare
PP_5045 -1.2 -4.0 tRNA sulfurtransferase compare
PP_4367 -1.2 -3.5 Flagellar assembly protein FliH compare
PP_4370 -1.2 -2.5 Flagellar hook-basal body complex protein FliE compare
PP_5294 -1.2 -4.9 Ribonuclease PH compare
PP_0406 -1.2 -2.1 Nucleotidyltransferase family protein compare
PP_4388 -1.2 -8.7 Flagellar hook protein FlgE compare
PP_1142 -1.1 -1.5 conserved protein of unknown function compare
PP_0082 -1.1 -4.4 tryptophan synthase alpha chain compare
PP_4964 -1.1 -2.6 D-erythrose 4-phosphate dehydrogenase compare
PP_5327 -1.1 -2.3 putative phosphate ABC transporter, permease subunit compare
PP_1319 -1.1 -3.6 Ubiquinol--cytochrome c reductase, cytochrome c1 compare
PP_5346 -1.1 -4.7 pyruvate carboxylase subunit B compare
PP_4993 -1.1 -3.4 Glutathione synthetase compare
PP_4340 -1.1 -3.1 response regulator for chemotactic signal transduction compare
PP_4394 -1.1 -4.5 flagella basal body P-ring formation protein compare
PP_3551 -1.1 -2.3 DNA-binding response regulator, LuxR family compare
PP_0948 -1.1 -1.7 Phosphocarrier protein HPr compare
PP_4355 -1.1 -2.5 flagellar export apparatus subunit compare
PP_5110 -1.1 -2.4 cytokinetic ring ABC transporter-like subunit - ATP-binding subunit compare
PP_2028 -1.1 -4.7 conserved protein of unknown function containing tetratricopeptide (TPR) domain repeat compare
PP_4988 -1.1 -4.7 signal transduction histidine kinase CheA/CheY-like receiver compare
PP_0872 -1.1 -4.2 Peptide chain release factor 3 compare
PP_5248 -1.1 -1.9 putative hydrolase compare
PP_4824 -1.1 -4.8 Sensor histidine kinase/response regulator compare
PP_4352 -1.1 -5.8 flagellin export apparatus, substrate specificity protein compare
PP_5095 -1.1 -0.7 pyrroline-5-carboxylate reductase compare
PP_0957 -1.1 -1.8 D-arabinose 5-phosphate isomerase compare
PP_4004 -1.1 -2.2 DNA translocase FtsK compare
PP_4338 -1.0 -5.8 Chemotaxis histidine kinase CheA compare
PP_4391 -1.0 -6.0 flagellar basal-body rod protein FlgB compare
PP_0760 -1.0 -2.2 conserved membrane protein of unknown function compare
PP_2390 -1.0 -5.7 Transcriptional regulator, LysR family compare
PP_4532 -1.0 -1.4 ATP-dependent DEAD-box RNA helicase require for 50S ribosomal subunit biogenesis compare
PP_4332 -1.0 -3.6 Chemotaxis protein CheW compare
PP_4343 -1.0 -3.3 Flagellar biosynthesis protein FlhF compare
PP_4341 -1.0 -5.4 RNA polymerase sigma 28 (sigma F) factor for class III flagellar operons compare
PP_4337 -1.0 -3.9 chemotaxis response regulator protein-glutamate methylesterase of group 1 operon compare
PP_0834 -1.0 -2.1 Sec translocation complex subunit YajC compare
PP_4386 -1.0 -5.0 flagellar basal-body rod protein FlgF compare
PP_2437 -1.0 -6.8 putative Acyl-CoA dehydrogenase compare
PP_3946 -1.0 -0.9 HTH-type transcriptional repressor NicR compare
PP_2031 -1.0 -3.0 conserved protein of unknown function compare
PP_2144 -1.0 -2.5 Transcriptional regulator, TetR family compare
PP_4804 -1.0 -1.0 RlpA-like lipoprotein compare
PP_4359 -1.0 -4.0 Flagellar protein FliL compare
PP_3649 -1.0 -3.9 Transcriptional regulator, GntR family compare
PP_2286 -1.0 -3.4 conserved protein of unknown function compare
PP_4936 -1.0 -4.8 O-antigen polymerase compare
PP_4940 -1.0 -4.6 Putative glycosyltransferase compare
PP_1216 -1.0 -1.4 Holliday junction ATP-dependent DNA helicase RuvA compare
PP_1629 -1.0 -3.8 Protein RecA compare
PP_3821 -1.0 -5.8 UTP-glucose-1-phosphate uridylyltransferase compare
PP_5310 -1.0 -3.2 junction-specific ATP-dependent DNA helicase compare
PP_2137 -1.0 -2.0 beta-ketoadipyl CoA thiolase, beta component compare
PP_5701 -1.0 -1.9 conserved protein of unknown function compare
PP_4385 -0.9 -4.0 flagellar basal-body rod protein FlgG compare
PP_4130 -0.9 -3.0 NADH:ubiquinone oxidoreductase, membrane subunit M compare
PP_2322 -0.9 -5.1 Major outer membrane lipoprotein compare


Specific Phenotypes

For 2 genes in this experiment

For soil Soil=PNNL_Prosser_PlotA_B_20191220; Sterility=sterile; Collection=outgrowth_in_LB_2hrs_then_extra_outgrowth_in_LB; SoilTreatment=coldshock; SoilTreatmentTime=144_hrs in Pseudomonas putida KT2440

For soil Soil=PNNL_Prosser_PlotA_B_20191220; Sterility=sterile; Collection=outgrowth_in_LB_2hrs_then_extra_outgrowth_in_LB; SoilTreatment=coldshock; SoilTreatmentTime=144_hrs across organisms