Experiment set23IT072 for Pseudomonas putida KT2440

Compare to:

Soil=PNNL_Prosser_PlotA_B_20191220; Sterility=nonsterile; Collection=outgrowth_in_LB; SoilTreatment=coldshock; SoilTreatmentTime=144_hrs

200 most important genes:

  gene name fitness t score description  
PP_1623 -7.0 -9.0 RNA polymerase, sigma S (sigma 38) factor compare
PP_0164 -5.8 -4.0 conserved protein of unknown function compare
PP_1778 -5.1 -9.7 Lipopolysaccharide ABC export system, permease protein compare
PP_1779 -4.8 -10.3 Lipopolysaccharide ABC export system, ATP-binding protein compare
PP_4943 -4.3 -3.0 putative Glycosyl transferase compare
PP_4902 -3.5 -4.5 Oligoribonuclease compare
PP_4726 -3.5 -4.7 Chaperone protein DnaJ compare
PP_0406 -3.1 -3.7 Nucleotidyltransferase family protein compare
PP_0547 -3.1 -5.9 UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl- meso-diaminopimelate ligase compare
PP_0396 -2.9 -12.7 conserved protein of unknown function compare
PP_5289 -2.9 -4.0 Acetylglutamate kinase compare
PP_5145 -2.9 -16.9 phosphoenolpyruvate-dependent regulator (with NPR and NTR proteins) compare
PP_4008 -2.7 -8.6 ATP-dependent serine protease compare
PP_0949 -2.6 -7.3 putative ATP-binding protein UPF0042 compare
PP_4342 -2.6 -4.4 flagellar synthesis regulator, putative ATPase compare
PP_0397 -2.6 -14.2 protein kinase compare
PP_4355 -2.5 -3.6 flagellar export apparatus subunit compare
PP_4058 -2.5 -11.2 1,4-alpha-glucan branching enzyme compare
PP_4375 -2.4 -8.6 flagellar chaperone, inhibits premature FliC assembly compare
PP_2378 -2.4 -3.2 Fe/S biogenesis protein NfuA compare
PP_0395 -2.4 -12.0 putative type IV piliation protein compare
PP_1216 -2.3 -3.0 Holliday junction ATP-dependent DNA helicase RuvA compare
PP_1733 -2.3 -3.4 membrane ATPase of the MinC-MinD-MinE system compare
PP_4337 -2.3 -7.0 chemotaxis response regulator protein-glutamate methylesterase of group 1 operon compare
PP_4376 -2.3 -11.6 flagellar filament capping protein compare
PP_4368 -2.2 -7.6 flagellar motor switch protein compare
PP_0846 -2.2 -1.7 DnaK-like molecular chaperone specific for IscU compare
PP_5185 -2.2 -6.1 acetylglutamate kinase-like protein (regulatory domain)/amino acid N-acetyltransferase compare
PP_4129 -2.2 -3.6 NADH:ubiquinone oxidoreductase, membrane subunit L compare
PP_4353 -2.2 -6.6 Flagellar biosynthetic protein fliR compare
PP_1493 -2.2 -3.9 chemotaxis response regulator protein-glutamate methylesterase of group 3 operon compare
PP_4358 -2.2 -7.2 flagellar synthesis, switching and energizing component compare
PP_4354 -2.2 -4.6 flagellar export apparatus subunit compare
PP_4369 -2.2 -9.3 Flagellar M-ring protein compare
PP_4352 -2.2 -11.6 flagellin export apparatus, substrate specificity protein compare
PP_4940 -2.1 -11.5 Putative glycosyltransferase compare
PP_4332 -2.1 -5.0 Chemotaxis protein CheW compare
PP_4370 -2.1 -4.7 Flagellar hook-basal body complex protein FliE compare
PP_4936 -2.1 -9.8 O-antigen polymerase compare
PP_0184 -2.1 -5.1 Argininosuccinate lyase compare
PP_4341 -2.1 -9.6 RNA polymerase sigma 28 (sigma F) factor for class III flagellar operons compare
PP_4126 -2.1 -1.4 NADH-quinone oxidoreductase subunit I compare
PP_0948 -2.1 -2.3 Phosphocarrier protein HPr compare
PP_4356 -2.0 -3.8 Flagellar protein FliO compare
PP_4942 -2.0 -2.9 conserved protein of unknown function compare
PP_4365 -2.0 -6.0 Flagellar protein FliJ compare
PP_4378 -2.0 -12.1 flagellin, filament structural protein compare
PP_1783 -2.0 -2.3 dTDP-glucose pyrophosphorylase compare
PP_4381 -2.0 -10.8 Flagellar hook-associated protein FlgK compare
PP_4941 -2.0 -7.6 conserved exported protein of unknown function compare
PP_4388 -2.0 -12.1 Flagellar hook protein FlgE compare
PP_1318 -2.0 -6.6 Cytochrome b compare
PP_4130 -2.0 -5.6 NADH:ubiquinone oxidoreductase, membrane subunit M compare
PP_4366 -2.0 -9.5 flagellum-specific ATP synthase compare
PP_5328 -1.9 -2.9 putative phosphate transport system permease protein compare
PP_0082 -1.9 -6.4 tryptophan synthase alpha chain compare
PP_4124 -1.9 -4.2 NADH-quinone oxidoreductase subunit G compare
PP_4385 -1.9 -8.1 flagellar basal-body rod protein FlgG compare
PP_4390 -1.9 -7.9 flagellar basal-body rod protein FlgC compare
PP_4391 -1.9 -6.1 flagellar basal-body rod protein FlgB compare
PP_4944 -1.9 -3.7 Carbamoyltransferase compare
PP_1088 -1.9 -7.8 Argininosuccinate synthase compare
PP_4344 -1.9 -9.9 flagellar export pore protein compare
PP_1217 -1.9 -4.5 Holliday junction ATP-dependent DNA helicase RuvB compare
PP_1198 -1.9 -2.9 transcriptional regulator, Cro/CI family (higA antitoxin like) compare
PP_4964 -1.8 -3.6 D-erythrose 4-phosphate dehydrogenase compare
PP_4384 -1.8 -8.1 Flagellar L-ring protein compare
PP_4380 -1.8 -11.2 Flagellar hook-associated protein FlgL compare
PP_4396 -1.8 -5.6 conserved protein of unknown function compare
PP_1994 -1.7 -2.5 tRNA pseudouridine (38-40)synthase compare
PP_4361 -1.7 -7.4 Flagellar hook-length control protein FliK compare
PP_5095 -1.7 -1.1 pyrroline-5-carboxylate reductase compare
PP_0405 -1.7 -8.2 conserved protein of unknown function compare
PP_1898 -1.7 -2.8 MotA/TolQ/ExbB proton channel family protein compare
PP_4938 -1.7 -7.7 putative Glycosyl transferase compare
PP_4382 -1.7 -6.3 Peptidoglycan hydrolase FlgJ compare
PP_4383 -1.7 -5.2 Flagellar P-ring protein compare
PP_5217 -1.7 -12.3 Polyphosphate kinase compare
PP_3484 -1.7 -2.8 Response regulator receiver protein compare
PP_4394 -1.7 -7.1 flagella basal body P-ring formation protein compare
PP_4131 -1.7 -5.0 NADH-quinone oxidoreductase subunit N compare
PP_4120 -1.6 -2.7 NADH-quinone oxidoreductase subunit B compare
PP_0951 -1.6 -7.5 Ribosome hibernation promoting factor compare
PP_0789 -1.6 -4.1 N-acetyl-anhydromuramyl-L-alanine-amidase compare
PP_4909 -1.6 -5.8 phosphoserine phosphatase compare
PP_4379 -1.6 -4.3 Beta-ketoacyl-acyl-carrier-protein synthase I compare
PP_1355 -1.6 -7.7 Muropeptide permease AmpG compare
PP_1764 -1.6 -3.2 Phosphoglycolate phosphatase 2 compare
PP_4532 -1.5 -1.7 ATP-dependent DEAD-box RNA helicase require for 50S ribosomal subunit biogenesis compare
PP_1036 -1.5 -7.5 membrane-bound lytic murein transglycosylase F compare
PP_3821 -1.5 -6.9 UTP-glucose-1-phosphate uridylyltransferase compare
PP_5155 -1.5 -3.2 D-3-phosphoglycerate dehydrogenase / alpha-ketoglutarate reductase compare
PP_0888 -1.5 -2.9 Photosynthetic apparatus regulatory protein RegA compare
PP_4386 -1.5 -3.5 flagellar basal-body rod protein FlgF compare
PP_5329 -1.5 -2.9 putative phosphate ABC transporter, periplasmic phosphate-binding protein compare
PP_4392 -1.5 -6.6 chemotaxis protein methyltransferase compare
PP_4389 -1.5 -6.7 Flagellar basal-body rod modification protein FlgD compare
PP_1734 -1.5 -3.2 Probable septum site-determining protein MinC compare
PP_5644 -1.4 -1.9 conserved membrane protein of unknown function compare
PP_4121 -1.4 -4.3 NADH-quinone oxidoreductase subunit C/D compare
PP_4340 -1.4 -3.2 response regulator for chemotactic signal transduction compare
PP_4122 -1.4 -1.8 proton-pumping NADH:ubiquinone oxidoreductase, respiratory complex I, subunit E compare
PP_4880 -1.4 -8.1 exoribonuclease R compare
PP_4993 -1.4 -4.6 Glutathione synthetase compare
PP_4367 -1.4 -3.6 Flagellar assembly protein FliH compare
PP_0434 -1.4 -3.6 Anhydro-N-acetylmuramic acid kinase compare
PP_2145 -1.4 -2.4 beta-N-acetylglucosaminidase compare
PP_2144 -1.4 -3.7 Transcriptional regulator, TetR family compare
PP_0218 -1.4 -6.5 Sensory box protein compare
PP_4892 -1.4 -4.7 integral membrane ATP-dependent zinc metallopeptidase / HflK-HflC complex compare
PP_5090 -1.4 -2.2 putative cell division protein compare
PP_1658 -1.3 -3.3 conserved protein of unknown function compare
PP_2328 -1.3 -4.1 Phosphoadenosine phosphosulfate reductase compare
PP_1804 -1.3 -6.4 Glycosyl transferase WbpL compare
PP_4642 -1.3 -1.6 Cyclic diguanosine monophosphate-binding protein compare
PP_5514 -1.3 -2.0 conserved protein of unknown function compare
PP_4004 -1.3 -2.6 DNA translocase FtsK compare
PP_0984 -1.3 -5.0 conserved membrane protein of unknown function compare
PP_1122 -1.3 -2.5 OmpA family protein compare
PP_4359 -1.3 -5.6 Flagellar protein FliL compare
PP_1319 -1.3 -4.3 Ubiquinol--cytochrome c reductase, cytochrome c1 compare
PP_4261 -1.3 -3.7 cation-transporting P-type ATPase compare
PP_0083 -1.3 -5.8 tryptophan synthase beta chain compare
PP_5216 -1.3 -1.9 exopolyphosphatase compare
PP_4891 -1.2 -3.2 integral membrane ATP-dependent zinc metallopeptidase / HflK-HflC complex compare
PP_2302 -1.2 -3.7 DNA-binding, ATP-dependent protease compare
PP_4917 -1.2 -4.3 3',5'-cyclic-nucleotide phosphodiesterase compare
PP_0293 -1.2 -2.2 Imidazole glycerol phosphate synthase subunit HisF compare
PP_2029 -1.2 -1.8 von Willebrand factor type A domain protein compare
PP_4263 -1.2 -2.2 putative membrane-bounded cytochrome biogenesis cycZ-like domain, copper tolerance protein compare
PP_2030 -1.2 -2.9 conserved protein of unknown function compare
PP_5337 -1.2 -3.9 LysR family transcriptional regulator compare
PP_1317 -1.2 -3.5 Ubiquinol-cytochrome c reductase iron-sulfur subunit compare
PP_3064 -1.2 -2.9 Phage tail protein compare
PP_4824 -1.2 -4.7 Sensor histidine kinase/response regulator compare
PP_4251 -1.1 -3.0 cytochrome c oxidase subunit, cbb3-type compare
PP_4143 -1.1 -3.5 conserved protein of unknown function compare
PP_1087 -1.1 -6.8 Outer membrane protein, OmpA family compare
PP_5084 -1.1 -5.6 penicillin-insensitive transglycosylase/penicillin-sensitive transpeptidase compare
PP_3649 -1.1 -2.8 Transcriptional regulator, GntR family compare
PP_0435 -1.1 -5.2 Peptidase, M23/M37 family compare
PP_1801 -1.1 -6.7 Glycosyl transferase WbpY compare
PP_1629 -1.1 -4.6 Protein RecA compare
PP_2903 -1.1 -1.8 peptidyl-prolyl cis-trans isomerase B (rotamase B) compare
PP_0339 -1.1 -0.7 Pyruvate dehydrogenase E1 component compare
PP_4343 -1.1 -4.1 Flagellar biosynthesis protein FlhF compare
PP_4696 -1.1 -3.3 Nitrogen regulation protein NR(I) compare
PP_1214 -1.1 -1.9 putative transcriptional regulatory protein compare
PP_4333 -1.0 -3.2 CheW domain protein compare
PP_4785 -1.0 -4.6 conserved exported protein of unknown function compare
PP_4338 -1.0 -4.9 Chemotaxis histidine kinase CheA compare
PP_0123 -1.0 -5.1 DNA polymerase I, 5 compare
PP_4988 -1.0 -4.0 signal transduction histidine kinase CheA/CheY-like receiver compare
PP_2402 -1.0 -1.4 putative Sensor histidine kinase compare
PP_1224 -1.0 -5.3 periplasmic subunit of the TolQRA transport system compare
PP_1909 -1.0 -3.5 putative septum formation protein compare
PP_1802 -1.0 -7.2 glycosyl transferase compare
PP_4546 -1.0 -3.0 ATP-dependent helicase HrpA compare
PP_5146 -1.0 -4.2 RNA pyrophosphohydrolase compare
PP_2028 -1.0 -3.5 conserved protein of unknown function containing tetratricopeptide (TPR) domain repeat compare
PP_2217 -1.0 -1.7 enoyl-CoA hydratase compare
PP_0758 -1.0 -3.3 conserved protein of unknown function compare
PP_0833 -1.0 -1.1 queuine tRNA-ribosyltransferase compare
PP_4471 -1.0 -3.0 Magnesium transporter compare
PP_3434 -1.0 -1.3 conserved protein of unknown function compare
PP_4989 -1.0 -2.5 Protein PilJ compare
PP_4697 -1.0 -3.5 poly(A) polymerase compare
PP_5502 -0.9 -3.5 ribosome modulation factor compare
PP_1041 -0.9 -1.6 twin arginine protein export complex subunit compare
PP_2720 -0.9 -1.4 conserved protein of unknown function compare
PP_2160 -0.9 -3.8 NADPH-dependent 7-cyano-7-deazaguanine reductase compare
PP_1826 -0.9 -1.6 Hydrolase, isochorismatase family compare
PP_5310 -0.9 -3.8 junction-specific ATP-dependent DNA helicase compare
PP_4952 -0.9 -1.9 ATP-dependent RNA helicase, specific for 23S rRNA compare
PP_0135 -0.9 -3.3 conserved exported protein of unknown function compare
PP_1780 -0.9 -7.4 putative mannosyltransferase compare
PP_1860 -0.9 -3.2 Organic hydroperoxide resistance transcriptional regulator compare
PP_3073 -0.9 -3.3 3-hydroxybutyrate dehydrogenase compare
PP_1906 -0.9 -2.9 ribosomal large subunit pseudouridine synthase C compare
PP_4593 -0.9 -1.7 conserved protein of unknown function compare
PP_3245 -0.9 -1.5 conserved protein of unknown function compare
PP_1805 -0.9 -6.8 Polysaccharide biosynthesis protein compare
PP_2027 -0.9 -3.6 conserved exported protein of unknown function compare
PP_0127 -0.9 -2.4 Thiol:disulfide interchange protein compare
PP_1800 -0.9 -4.9 Oxidoreductase Rmd compare
PP_2336 -0.9 -1.4 aconitate hydratase 1 compare
PP_4961 -0.9 -1.7 putative Lipoprotein compare
PP_3596 -0.9 -4.2 D-lysine oxidase compare
PP_4517 -0.9 -1.7 conserved protein of unknown function compare
PP_4010 -0.9 -2.8 DNA replication inhibitor compare
PP_2756 -0.8 -2.6 conserved protein of unknown function compare
PP_0290 -0.8 -4.0 Imidazole glycerol phosphate synthase subunit HisH compare
PP_5109 -0.8 -5.2 membrane component of the ABC transporter FtsEX involved in cellular division compare
PP_5445 -0.8 -2.4 conserved protein of unknown function compare
PP_1362 -0.8 -1.7 pyruvate kinase II compare
PP_1777 -0.8 -4.8 phosphomannomutase compare
PP_4722 -0.8 -3.2 Transcription elongation factor GreA compare
PP_4904 -0.8 -4.4 Flagellar motor rotation protein compare
PP_2510 -0.8 -1.8 conserved protein of unknown function compare
PP_4994 -0.8 -1.8 conserved protein of unknown function compare


Specific Phenotypes

None in this experiment

For Pseudomonas putida KT2440 in soil experiments

For soil Soil=PNNL_Prosser_PlotA_B_20191220; Sterility=nonsterile; Collection=outgrowth_in_LB; SoilTreatment=coldshock; SoilTreatmentTime=144_hrs across organisms