Experiment set23IT070 for Pseudomonas putida KT2440

Compare to:

Soil=PNNL_Prosser_PlotA_B_20191220; Sterility=nonsterile; Collection=outgrowth_in_LB; SoilTreatment=coldshock; SoilTreatmentTime=144_hrs

200 most important genes:

  gene name fitness t score description  
PP_1623 -7.5 -9.2 RNA polymerase, sigma S (sigma 38) factor compare
PP_1778 -6.3 -4.4 Lipopolysaccharide ABC export system, permease protein compare
PP_0164 -4.9 -3.4 conserved protein of unknown function compare
PP_1779 -4.4 -7.7 Lipopolysaccharide ABC export system, ATP-binding protein compare
PP_4726 -4.3 -2.9 Chaperone protein DnaJ compare
PP_1215 -4.2 -2.9 Crossover junction endodeoxyribonuclease RuvC compare
PP_1328 -4.1 -3.8 Protein MraZ compare
PP_0547 -3.7 -5.1 UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl- meso-diaminopimelate ligase compare
PP_0673 -3.6 -2.6 conserved protein of unknown function compare
PP_4902 -3.6 -3.5 Oligoribonuclease compare
PP_4370 -3.5 -5.2 Flagellar hook-basal body complex protein FliE compare
PP_4943 -3.4 -2.3 putative Glycosyl transferase compare
PP_4364 -3.4 -4.6 putative Anti-sigma F factor antagonist compare
PP_2088 -3.3 -3.2 RNA polymerase sigma factor SigX compare
PP_0396 -3.3 -12.2 conserved protein of unknown function compare
PP_5145 -3.3 -13.4 phosphoenolpyruvate-dependent regulator (with NPR and NTR proteins) compare
PP_3946 -3.2 -1.9 HTH-type transcriptional repressor NicR compare
PP_3649 -3.2 -5.7 Transcriptional regulator, GntR family compare
PP_4532 -3.2 -3.2 ATP-dependent DEAD-box RNA helicase require for 50S ribosomal subunit biogenesis compare
PP_0397 -3.1 -12.6 protein kinase compare
PP_0949 -3.1 -4.7 putative ATP-binding protein UPF0042 compare
PP_1366 -3.1 -1.8 Transcriptional regulator MvaT, P16 subunit compare
PP_0218 -3.0 -8.4 Sensory box protein compare
PP_1198 -3.0 -3.8 transcriptional regulator, Cro/CI family (higA antitoxin like) compare
PP_2217 -3.0 -3.4 enoyl-CoA hydratase compare
PP_4058 -3.0 -9.7 1,4-alpha-glucan branching enzyme compare
PP_5090 -2.9 -3.4 putative cell division protein compare
PP_1142 -2.9 -1.7 conserved protein of unknown function compare
PP_5054 -2.8 -2.7 glutaredoxin 3 compare
PP_0395 -2.8 -10.7 putative type IV piliation protein compare
PP_4008 -2.8 -7.6 ATP-dependent serine protease compare
PP_4375 -2.8 -7.7 flagellar chaperone, inhibits premature FliC assembly compare
PP_4379 -2.8 -3.7 Beta-ketoacyl-acyl-carrier-protein synthase I compare
PP_5185 -2.7 -4.9 acetylglutamate kinase-like protein (regulatory domain)/amino acid N-acetyltransferase compare
PP_4936 -2.7 -7.3 O-antigen polymerase compare
PP_1898 -2.7 -2.8 MotA/TolQ/ExbB proton channel family protein compare
PP_0292 -2.6 -2.9 1-(5-phosphoribosyl)-5-((5-phosphoribosylamino)methylideneamino)imidazole-4-carboxamide isomerase (EC 5.3.1.16) (from data) compare
PP_4122 -2.6 -1.8 proton-pumping NADH:ubiquinone oxidoreductase, respiratory complex I, subunit E compare
PP_4098 -2.5 -2.5 UvrABC system protein C compare
PP_0888 -2.5 -3.0 Photosynthetic apparatus regulatory protein RegA compare
PP_1217 -2.4 -4.4 Holliday junction ATP-dependent DNA helicase RuvB compare
PP_5289 -2.4 -3.5 Acetylglutamate kinase compare
PP_5267 -2.4 -2.7 putative cytochrome c5 compare
PP_4941 -2.4 -6.6 conserved exported protein of unknown function compare
PP_5546 -2.4 -2.7 conserved protein of unknown function compare
PP_4332 -2.4 -4.5 Chemotaxis protein CheW compare
PP_1733 -2.4 -2.3 membrane ATPase of the MinC-MinD-MinE system compare
PP_4214 -2.3 -3.8 pyoverdine biosynthesis related protein compare
PP_4814 -2.3 -2.5 ATP-dependent protease La domain protein compare
PP_4944 -2.3 -4.4 Carbamoyltransferase compare
PP_4381 -2.3 -9.4 Flagellar hook-associated protein FlgK compare
PP_5514 -2.3 -2.2 conserved protein of unknown function compare
PP_1099 -2.3 -2.3 Cold shock protein CapB compare
PP_4361 -2.3 -6.2 Flagellar hook-length control protein FliK compare
PP_5114 -2.2 -2.6 putative adenine methyltransferase compare
PP_4880 -2.2 -7.8 exoribonuclease R compare
PP_4517 -2.2 -2.3 conserved protein of unknown function compare
PP_4340 -2.2 -2.9 response regulator for chemotactic signal transduction compare
PP_1734 -2.2 -2.5 Probable septum site-determining protein MinC compare
PP_4382 -2.2 -6.5 Peptidoglycan hydrolase FlgJ compare
PP_0789 -2.1 -3.4 N-acetyl-anhydromuramyl-L-alanine-amidase compare
PP_4964 -2.0 -2.0 D-erythrose 4-phosphate dehydrogenase compare
PP_0065 -2.0 -3.1 NAD-binding component of TrK potassium transporter compare
PP_5015 -2.0 -3.6 phosphoribosyl-ATP pyrophosphatase (EC 3.6.1.31) (from data) compare
PP_4353 -2.0 -4.1 Flagellar biosynthetic protein fliR compare
PP_0184 -2.0 -4.2 Argininosuccinate lyase compare
PP_2568 -2.0 -1.7 Ring-cleaving dioxygenase compare
PP_4392 -2.0 -4.3 chemotaxis protein methyltransferase compare
PP_4338 -2.0 -5.2 Chemotaxis histidine kinase CheA compare
PP_2145 -1.9 -2.9 beta-N-acetylglucosaminidase compare
PP_2031 -1.9 -2.0 conserved protein of unknown function compare
PP_4368 -1.9 -4.4 flagellar motor switch protein compare
PP_4358 -1.9 -3.9 flagellar synthesis, switching and energizing component compare
PP_4824 -1.9 -5.4 Sensor histidine kinase/response regulator compare
PP_0914 -1.9 -7.2 GGDEF domain protein compare
PP_4367 -1.9 -3.0 Flagellar assembly protein FliH compare
PP_1783 -1.9 -1.3 dTDP-glucose pyrophosphorylase compare
PP_3484 -1.9 -3.2 Response regulator receiver protein compare
PP_4262 -1.9 -2.2 Cytochrome oxidase maturation protein, cbb3-type compare
PP_4378 -1.9 -8.1 flagellin, filament structural protein compare
PP_4376 -1.9 -7.9 flagellar filament capping protein compare
PP_4121 -1.9 -2.8 NADH-quinone oxidoreductase subunit C/D compare
PP_1036 -1.9 -6.9 membrane-bound lytic murein transglycosylase F compare
PP_5327 -1.8 -1.8 putative phosphate ABC transporter, permease subunit compare
PP_5310 -1.8 -5.3 junction-specific ATP-dependent DNA helicase compare
PP_4910 -1.8 -2.0 conserved protein of unknown function compare
PP_0405 -1.8 -7.4 conserved protein of unknown function compare
PP_4131 -1.8 -2.8 NADH-quinone oxidoreductase subunit N compare
PP_1088 -1.8 -7.0 Argininosuccinate synthase compare
PP_4355 -1.8 -2.4 flagellar export apparatus subunit compare
PP_1362 -1.8 -3.6 pyruvate kinase II compare
PP_4356 -1.8 -1.7 Flagellar protein FliO compare
PP_4470 -1.8 -3.9 putative transcriptional regulator (Arc domain-containing) compare
PP_1804 -1.8 -6.3 Glycosyl transferase WbpL compare
PP_4942 -1.8 -2.4 conserved protein of unknown function compare
PP_2378 -1.8 -2.1 Fe/S biogenesis protein NfuA compare
PP_4354 -1.7 -2.1 flagellar export apparatus subunit compare
PP_4120 -1.7 -1.7 NADH-quinone oxidoreductase subunit B compare
PP_3312 -1.7 -1.5 putative Heat shock protein compare
PP_4380 -1.7 -8.3 Flagellar hook-associated protein FlgL compare
PP_4994 -1.7 -2.7 conserved protein of unknown function compare
PP_4591 -1.7 -3.6 Ribonuclease D compare
PP_4369 -1.7 -5.0 Flagellar M-ring protein compare
PP_3596 -1.7 -6.1 D-lysine oxidase compare
PP_4383 -1.7 -4.3 Flagellar P-ring protein compare
PP_3821 -1.7 -6.5 UTP-glucose-1-phosphate uridylyltransferase compare
PP_4738 -1.7 -2.5 conserved exported protein of unknown function compare
PP_4004 -1.7 -2.4 DNA translocase FtsK compare
PP_2028 -1.7 -3.6 conserved protein of unknown function containing tetratricopeptide (TPR) domain repeat compare
PP_4909 -1.6 -4.0 phosphoserine phosphatase compare
PP_4384 -1.6 -6.5 Flagellar L-ring protein compare
PP_2030 -1.6 -4.0 conserved protein of unknown function compare
PP_1493 -1.6 -2.1 chemotaxis response regulator protein-glutamate methylesterase of group 3 operon compare
PP_1216 -1.6 -2.4 Holliday junction ATP-dependent DNA helicase RuvA compare
PP_4388 -1.6 -9.4 Flagellar hook protein FlgE compare
PP_3519 -1.6 -1.4 putative Lipoprotein compare
PP_4993 -1.6 -4.1 Glutathione synthetase compare
PP_4352 -1.6 -7.8 flagellin export apparatus, substrate specificity protein compare
PP_4366 -1.6 -7.2 flagellum-specific ATP synthase compare
PP_4386 -1.6 -3.6 flagellar basal-body rod protein FlgF compare
PP_4722 -1.6 -3.6 Transcription elongation factor GreA compare
PP_0123 -1.5 -6.1 DNA polymerase I, 5 compare
PP_1097 -1.5 -1.3 Methionine--tRNA ligase compare
PP_4365 -1.5 -3.8 Flagellar protein FliJ compare
PP_4333 -1.5 -4.8 CheW domain protein compare
PP_4143 -1.5 -2.7 conserved protein of unknown function compare
PP_1001 -1.5 -2.5 arginine deiminase compare
PP_4940 -1.5 -4.5 Putative glycosyltransferase compare
PP_5583 -1.5 -1.9 conserved protein of unknown function compare
PP_1536 -1.5 -2.7 conserved protein of unknown function compare
PP_1355 -1.5 -6.4 Muropeptide permease AmpG compare
PP_0274 -1.5 -1.1 putative transcriptional regulator containing HTH domain compare
PP_0839 -1.5 -2.9 tRNA Cm32/Um32 methyltransferase compare
PP_4337 -1.5 -3.2 chemotaxis response regulator protein-glutamate methylesterase of group 1 operon compare
PP_5230 -1.5 -3.0 Tyrosine recombinase XerC compare
PP_4344 -1.5 -5.2 flagellar export pore protein compare
PP_4891 -1.5 -3.4 integral membrane ATP-dependent zinc metallopeptidase / HflK-HflC complex compare
PP_5279 -1.4 -2.3 conserved protein of unknown function compare
PP_0135 -1.4 -3.0 conserved exported protein of unknown function compare
PP_5337 -1.4 -4.0 LysR family transcriptional regulator compare
PP_5045 -1.4 -2.9 tRNA sulfurtransferase compare
PP_5028 -1.4 -2.3 proline iminopeptidase compare
PP_0951 -1.4 -5.9 Ribosome hibernation promoting factor compare
PP_5146 -1.4 -4.4 RNA pyrophosphohydrolase compare
PP_4546 -1.4 -3.0 ATP-dependent helicase HrpA compare
PP_4785 -1.4 -3.4 conserved exported protein of unknown function compare
PP_5328 -1.4 -1.9 putative phosphate transport system permease protein compare
PP_1609 -1.3 -2.5 conserved protein of unknown function compare
PP_4390 -1.3 -5.3 flagellar basal-body rod protein FlgC compare
PP_0775 -1.3 -1.8 conserved protein of unknown function compare
PP_1318 -1.3 -4.5 Cytochrome b compare
PP_1826 -1.3 -2.2 Hydrolase, isochorismatase family compare
PP_0846 -1.3 -1.1 DnaK-like molecular chaperone specific for IscU compare
PP_0832 -1.3 -2.7 S-adenosylmethionine:tRNA ribosyltransferase-isomerase compare
PP_2510 -1.3 -1.0 conserved protein of unknown function compare
PP_4394 -1.3 -2.9 flagella basal body P-ring formation protein compare
PP_1702 -1.3 -1.9 Recombination-associated protein RdgC compare
PP_0957 -1.3 -1.5 D-arabinose 5-phosphate isomerase compare
PP_2203 -1.3 -1.3 conserved protein of unknown function compare
PP_4385 -1.3 -3.7 flagellar basal-body rod protein FlgG compare
PP_4952 -1.2 -1.7 ATP-dependent RNA helicase, specific for 23S rRNA compare
PP_0083 -1.2 -4.3 tryptophan synthase beta chain compare
PP_1293 -1.2 -1.2 molybdopterin synthase small subunit compare
PP_0999 -1.2 -1.9 carbamate kinase compare
PP_0630 -1.2 -1.0 DNA gyrase inhibitor YacG compare
PP_4938 -1.2 -5.2 putative Glycosyl transferase compare
PP_1319 -1.2 -2.7 Ubiquinol--cytochrome c reductase, cytochrome c1 compare
PP_3035 -1.2 -1.5 conserved protein of unknown function compare
PP_0131 -1.2 -7.3 putative membrane-anchored phosphodiesterase compare
PP_3241 -1.2 -1.0 conserved exported protein of unknown function compare
PP_0127 -1.2 -1.8 Thiol:disulfide interchange protein compare
PP_0833 -1.2 -0.8 queuine tRNA-ribosyltransferase compare
PP_1269 -1.2 -1.1 Universal stress protein family compare
PP_1776 -1.2 -6.3 Mannose-6-phosphate isomerase/mannose-1-phosphate guanylyltransferase compare
PP_5331 -1.2 -2.1 Long-chain acyl-CoA thioester hydrolase compare
PP_4471 -1.2 -3.2 Magnesium transporter compare
PP_5393 -1.2 -0.8 putative metal-binding chaperone compare
PP_5058 -1.2 -3.0 Carboxy-terminal-processing protease compare
PP_0435 -1.2 -4.3 Peptidase, M23/M37 family compare
PP_2160 -1.2 -2.4 NADPH-dependent 7-cyano-7-deazaguanine reductase compare
PP_3766 -1.1 -2.0 Lactoylglutathione lyase compare
PP_4988 -1.1 -4.2 signal transduction histidine kinase CheA/CheY-like receiver compare
PP_1906 -1.1 -2.8 ribosomal large subunit pseudouridine synthase C compare
PP_2336 -1.1 -0.8 aconitate hydratase 1 compare
PP_4696 -1.1 -2.3 Nitrogen regulation protein NR(I) compare
PP_2027 -1.1 -2.5 conserved exported protein of unknown function compare
PP_4336 -1.1 -3.0 flagellar motor rotation protein compare
PP_5084 -1.1 -3.9 penicillin-insensitive transglycosylase/penicillin-sensitive transpeptidase compare
PP_4917 -1.1 -2.4 3',5'-cyclic-nucleotide phosphodiesterase compare
PP_4045 -1.1 -1.3 conserved protein of unknown function compare
PP_4271 -1.1 -0.8 conserved protein of unknown function compare
PP_1571 -1.1 -1.4 conserved protein of unknown function compare
PP_4892 -1.1 -3.2 integral membrane ATP-dependent zinc metallopeptidase / HflK-HflC complex compare
PP_5352 -1.1 -6.0 DNA-dependent ATPase I and helicase II, nucleotide Excision Repair Complex compare
PP_5203 -1.1 -3.8 5-formyltetrahydrofolate cyclo-ligase compare
PP_2442 -1.1 -1.5 conserved protein of unknown function, DUF480 family compare
PP_0406 -1.1 -1.8 Nucleotidyltransferase family protein compare
PP_2433 -1.1 -2.1 conserved protein of unknown function compare
PP_3411 -1.1 -1.5 conserved protein of unknown function compare
PP_1802 -1.1 -6.7 glycosyl transferase compare


Specific Phenotypes

For 2 genes in this experiment

For soil Soil=PNNL_Prosser_PlotA_B_20191220; Sterility=nonsterile; Collection=outgrowth_in_LB; SoilTreatment=coldshock; SoilTreatmentTime=144_hrs in Pseudomonas putida KT2440

For soil Soil=PNNL_Prosser_PlotA_B_20191220; Sterility=nonsterile; Collection=outgrowth_in_LB; SoilTreatment=coldshock; SoilTreatmentTime=144_hrs across organisms