Experiment set23IT069 for Pseudomonas putida KT2440

Compare to:

Soil=PNNL_Prosser_PlotA_B_20191220; Sterility=sterile; Collection=outgrowth_in_LB; SoilTreatment=coldshock; SoilTreatmentTime=144_hrs

200 most important genes:

  gene name fitness t score description  
PP_0760 -7.6 -5.3 conserved membrane protein of unknown function compare
PP_1623 -6.5 -10.4 RNA polymerase, sigma S (sigma 38) factor compare
PP_3484 -6.2 -7.4 Response regulator receiver protein compare
PP_0164 -5.7 -4.0 conserved protein of unknown function compare
PP_4994 -4.6 -6.7 conserved protein of unknown function compare
PP_4726 -4.4 -4.3 Chaperone protein DnaJ compare
PP_4058 -4.2 -12.8 1,4-alpha-glucan branching enzyme compare
PP_5289 -4.2 -5.7 Acetylglutamate kinase compare
PP_4342 -4.1 -4.9 flagellar synthesis regulator, putative ATPase compare
PP_1778 -4.0 -11.4 Lipopolysaccharide ABC export system, permease protein compare
PP_1779 -3.8 -10.2 Lipopolysaccharide ABC export system, ATP-binding protein compare
PP_0951 -3.8 -10.1 Ribosome hibernation promoting factor compare
PP_1898 -3.5 -3.2 MotA/TolQ/ExbB proton channel family protein compare
PP_5185 -3.4 -7.2 acetylglutamate kinase-like protein (regulatory domain)/amino acid N-acetyltransferase compare
PP_4122 -3.3 -2.2 proton-pumping NADH:ubiquinone oxidoreductase, respiratory complex I, subunit E compare
PP_1428 -3.3 -3.1 Sigma factor AlgU negative regulatory protein compare
PP_0293 -3.2 -3.3 Imidazole glycerol phosphate synthase subunit HisF compare
PP_2378 -3.1 -2.1 Fe/S biogenesis protein NfuA compare
PP_0396 -3.1 -15.3 conserved protein of unknown function compare
PP_1198 -3.0 -5.1 transcriptional regulator, Cro/CI family (higA antitoxin like) compare
PP_4143 -3.0 -3.9 conserved protein of unknown function compare
PP_4902 -2.9 -4.7 Oligoribonuclease compare
PP_4004 -2.9 -4.8 DNA translocase FtsK compare
PP_1734 -2.8 -3.4 Probable septum site-determining protein MinC compare
PP_1088 -2.8 -11.2 Argininosuccinate synthase compare
PP_0290 -2.7 -7.8 Imidazole glycerol phosphate synthase subunit HisH compare
PP_4356 -2.7 -3.8 Flagellar protein FliO compare
PP_2327 -2.7 -6.9 transcriptional dual regulator / CysB-O-acetyl-L-serine compare
PP_5145 -2.7 -18.6 phosphoenolpyruvate-dependent regulator (with NPR and NTR proteins) compare
PP_5217 -2.7 -17.0 Polyphosphate kinase compare
PP_0184 -2.6 -6.6 Argininosuccinate lyase compare
PP_0397 -2.6 -14.8 protein kinase compare
PP_0395 -2.6 -11.8 putative type IV piliation protein compare
PP_1224 -2.5 -8.0 periplasmic subunit of the TolQRA transport system compare
PP_2402 -2.4 -2.8 putative Sensor histidine kinase compare
PP_4008 -2.4 -8.5 ATP-dependent serine protease compare
PP_5014 -2.4 -3.4 Phosphoribosyl-AMP cyclohydrolase compare
PP_0966 -2.3 -9.0 Histidinol dehydrogenase compare
PP_1237 -2.3 -2.5 4-hydroxy-tetrahydrodipicolinate synthase compare
PP_4131 -2.3 -5.0 NADH-quinone oxidoreductase subunit N compare
PP_1994 -2.2 -3.3 tRNA pseudouridine (38-40)synthase compare
PP_5309 -2.1 -3.8 oxidative and nitrosative stress transcriptional dual regulator compare
PP_0832 -2.1 -4.7 S-adenosylmethionine:tRNA ribosyltransferase-isomerase compare
PP_0967 -2.1 -8.4 histidinol-phosphate aminotransferase (EC 2.6.1.9) (from data) compare
PP_0406 -2.1 -3.7 Nucleotidyltransferase family protein compare
PP_5502 -2.1 -6.4 ribosome modulation factor compare
PP_4124 -2.1 -3.7 NADH-quinone oxidoreductase subunit G compare
PP_4120 -2.1 -2.4 NADH-quinone oxidoreductase subunit B compare
PP_4880 -2.1 -10.0 exoribonuclease R compare
PP_3649 -2.1 -5.3 Transcriptional regulator, GntR family compare
PP_5327 -2.1 -3.3 putative phosphate ABC transporter, permease subunit compare
PP_4358 -2.0 -6.3 flagellar synthesis, switching and energizing component compare
PP_3821 -2.0 -9.1 UTP-glucose-1-phosphate uridylyltransferase compare
PP_1733 -2.0 -3.5 membrane ATPase of the MinC-MinD-MinE system compare
PP_4126 -2.0 -1.3 NADH-quinone oxidoreductase subunit I compare
PP_4129 -2.0 -3.7 NADH:ubiquinone oxidoreductase, membrane subunit L compare
PP_4891 -2.0 -5.4 integral membrane ATP-dependent zinc metallopeptidase / HflK-HflC complex compare
PP_5045 -2.0 -5.6 tRNA sulfurtransferase compare
PP_4964 -1.9 -3.6 D-erythrose 4-phosphate dehydrogenase compare
PP_0888 -1.9 -2.2 Photosynthetic apparatus regulatory protein RegA compare
PP_4370 -1.9 -4.2 Flagellar hook-basal body complex protein FliE compare
PP_0872 -1.9 -5.6 Peptide chain release factor 3 compare
PP_2214 -1.9 -4.3 3-hydroxyacyl-CoA dehydrogenase type-2 compare
PP_1985 -1.9 -4.4 3-isopropylmalate dehydratase large subunit compare
PP_0289 -1.9 -5.8 Imidazoleglycerol-phosphate dehydratase compare
PP_4367 -1.9 -3.5 Flagellar assembly protein FliH compare
PP_4361 -1.9 -6.4 Flagellar hook-length control protein FliK compare
PP_0547 -1.9 -4.4 UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl- meso-diaminopimelate ligase compare
PP_2862 -1.8 -6.3 Undecaprenyl-diphosphatase compare
PP_5146 -1.8 -7.0 RNA pyrophosphohydrolase compare
PP_0834 -1.8 -3.2 Sec translocation complex subunit YajC compare
PP_5514 -1.8 -1.5 conserved protein of unknown function compare
PP_4378 -1.8 -12.6 flagellin, filament structural protein compare
PP_4892 -1.7 -6.1 integral membrane ATP-dependent zinc metallopeptidase / HflK-HflC complex compare
PP_4344 -1.7 -9.1 flagellar export pore protein compare
PP_4380 -1.7 -11.7 Flagellar hook-associated protein FlgL compare
PP_4546 -1.7 -4.4 ATP-dependent helicase HrpA compare
PP_2903 -1.7 -2.9 peptidyl-prolyl cis-trans isomerase B (rotamase B) compare
PP_0292 -1.7 -3.8 1-(5-phosphoribosyl)-5-((5-phosphoribosylamino)methylideneamino)imidazole-4-carboxamide isomerase (EC 5.3.1.16) (from data) compare
PP_1764 -1.7 -3.6 Phosphoglycolate phosphatase 2 compare
PP_1217 -1.7 -4.8 Holliday junction ATP-dependent DNA helicase RuvB compare
PP_4341 -1.7 -5.7 RNA polymerase sigma 28 (sigma F) factor for class III flagellar operons compare
PP_0833 -1.7 -1.1 queuine tRNA-ribosyltransferase compare
PP_4376 -1.7 -8.8 flagellar filament capping protein compare
PP_4375 -1.7 -6.7 flagellar chaperone, inhibits premature FliC assembly compare
PP_5095 -1.7 -1.1 pyrroline-5-carboxylate reductase compare
PP_1988 -1.7 -7.4 3-isopropylmalate dehydrogenase compare
PP_4940 -1.6 -8.3 Putative glycosyltransferase compare
PP_4343 -1.6 -5.6 Flagellar biosynthesis protein FlhF compare
PP_4678 -1.6 -11.1 Ketol-acid reductoisomerase compare
PP_4384 -1.6 -9.4 Flagellar L-ring protein compare
PP_1783 -1.6 -1.8 dTDP-glucose pyrophosphorylase compare
PP_0965 -1.6 -7.2 ATP phosphoribosyltransferase (EC 2.4.2.17) (from data) compare
PP_4471 -1.6 -3.4 Magnesium transporter compare
PP_4121 -1.6 -4.4 NADH-quinone oxidoreductase subunit C/D compare
PP_4385 -1.6 -4.8 flagellar basal-body rod protein FlgG compare
PP_1319 -1.5 -3.9 Ubiquinol--cytochrome c reductase, cytochrome c1 compare
PP_4697 -1.5 -3.4 poly(A) polymerase compare
PP_4874 -1.5 -1.7 50S ribosomal protein L9 compare
PP_4993 -1.5 -4.1 Glutathione synthetase compare
PP_4936 -1.5 -8.5 O-antigen polymerase compare
PP_1099 -1.5 -2.9 Cold shock protein CapB compare
PP_4391 -1.5 -5.8 flagellar basal-body rod protein FlgB compare
PP_4396 -1.5 -3.2 conserved protein of unknown function compare
PP_4381 -1.5 -8.8 Flagellar hook-associated protein FlgK compare
PP_2145 -1.5 -2.5 beta-N-acetylglucosaminidase compare
PP_4680 -1.5 -10.4 acetohydroxybutanoate synthase / acetolactate synthase compare
PP_4065 -1.5 -5.7 methylcrotonyl-CoA carboxylase biotin-containing subunit beta compare
PP_4388 -1.5 -10.8 Flagellar hook protein FlgE compare
PP_5329 -1.5 -2.7 putative phosphate ABC transporter, periplasmic phosphate-binding protein compare
PP_0984 -1.5 -4.8 conserved membrane protein of unknown function compare
PP_0435 -1.5 -7.4 Peptidase, M23/M37 family compare
PP_5128 -1.5 -6.4 Dihydroxy-acid dehydratase compare
PP_4942 -1.5 -3.2 conserved protein of unknown function compare
PP_1691 -1.5 -3.0 conserved protein of unknown function compare
PP_4379 -1.5 -3.9 Beta-ketoacyl-acyl-carrier-protein synthase I compare
PP_4355 -1.4 -2.9 flagellar export apparatus subunit compare
PP_4890 -1.4 -3.5 ATP phosphoribosyltransferase regulatory subunit compare
PP_4679 -1.4 -6.4 acetohydroxybutanoate synthase / acetolactate synthase compare
PP_4382 -1.4 -6.6 Peptidoglycan hydrolase FlgJ compare
PP_4353 -1.4 -4.6 Flagellar biosynthetic protein fliR compare
PP_4904 -1.4 -7.7 Flagellar motor rotation protein compare
PP_4337 -1.4 -4.7 chemotaxis response regulator protein-glutamate methylesterase of group 1 operon compare
PP_4366 -1.4 -8.0 flagellum-specific ATP synthase compare
PP_5216 -1.3 -2.1 exopolyphosphatase compare
PP_3511 -1.3 -5.8 Branched-chain-amino-acid aminotransferase compare
PP_0368 -1.3 -9.7 putative Acyl-CoA dehydrogenase compare
PP_2371 -1.3 -4.8 Sulphite reductase hemoprotein, beta subunit compare
PP_2348 -1.3 -4.7 Sensor histidine kinase compare
PP_4369 -1.3 -5.8 Flagellar M-ring protein compare
PP_1355 -1.3 -8.5 Muropeptide permease AmpG compare
PP_4352 -1.3 -7.4 flagellin export apparatus, substrate specificity protein compare
PP_4368 -1.3 -4.4 flagellar motor switch protein compare
PP_4785 -1.3 -3.8 conserved exported protein of unknown function compare
PP_1025 -1.3 -7.3 2-isopropylmalate synthase compare
PP_1860 -1.3 -5.4 Organic hydroperoxide resistance transcriptional regulator compare
PP_4517 -1.3 -2.2 conserved protein of unknown function compare
PP_4938 -1.3 -7.3 putative Glycosyl transferase compare
PP_4386 -1.3 -5.1 flagellar basal-body rod protein FlgF compare
PP_4365 -1.3 -4.4 Flagellar protein FliJ compare
PP_3999 -1.3 -5.4 Uroporphyrinogen-III C-methyltransferase/Precorrin-2 dehydrogenase/Sirohydrochlorin ferrochelatase compare
PP_5347 -1.3 -6.5 pyruvate carboxylase subunit A compare
PP_1318 -1.3 -4.8 Cytochrome b compare
PP_4394 -1.2 -4.0 flagella basal body P-ring formation protein compare
PP_1079 -1.2 -3.8 Ornithine carbamoyltransferase compare
PP_3833 -1.2 -2.5 Response regulator compare
PP_1076 -1.2 -3.4 aquaglyceroporin compare
PP_0401 -1.2 -3.4 Ribosomal RNA small subunit methyltransferase A compare
PP_4130 -1.2 -3.7 NADH:ubiquinone oxidoreductase, membrane subunit M compare
PP_4390 -1.2 -7.8 flagellar basal-body rod protein FlgC compare
PP_5346 -1.2 -4.9 pyruvate carboxylase subunit B compare
PP_2433 -1.2 -2.1 conserved protein of unknown function compare
PP_5015 -1.2 -4.1 phosphoribosyl-ATP pyrophosphatase (EC 3.6.1.31) (from data) compare
PP_4383 -1.1 -4.7 Flagellar P-ring protein compare
PP_4988 -1.1 -4.7 signal transduction histidine kinase CheA/CheY-like receiver compare
PP_4338 -1.1 -6.8 Chemotaxis histidine kinase CheA compare
PP_4803 -1.1 -7.0 D-alanyl-D-alanine carboxypeptidase compare
PP_2335 -1.1 -5.7 methylcitrate synthase compare
PP_1804 -1.1 -6.0 Glycosyl transferase WbpL compare
PP_1036 -1.1 -6.5 membrane-bound lytic murein transglycosylase F compare
PP_2322 -1.1 -5.0 Major outer membrane lipoprotein compare
PP_4620 -1.1 -6.9 Fumarylacetoacetase compare
PP_1658 -1.1 -3.0 conserved protein of unknown function compare
PP_1906 -1.1 -2.7 ribosomal large subunit pseudouridine synthase C compare
PP_4009 -1.1 -2.4 ATP-dependent Clp protease adapter protein ClpS compare
PP_2030 -1.1 -3.4 conserved protein of unknown function compare
PP_0839 -1.1 -3.8 tRNA Cm32/Um32 methyltransferase compare
PP_5328 -1.1 -1.8 putative phosphate transport system permease protein compare
PP_1468 -1.1 -1.3 Tyrosine recombinase XerD compare
PP_4910 -1.1 -2.1 conserved protein of unknown function compare
PP_5028 -1.1 -2.8 proline iminopeptidase compare
PP_1986 -1.1 -1.9 3-isopropylmalate dehydratase small subunit compare
PP_4204 -1.0 -3.3 antitoxin of the type II toxin-antitoxin MqsRA system and DNA-binding transcriptional repressor compare
PP_t10 -1.0 -1.5 tRNA-Pro compare
PP_1142 -1.0 -1.4 conserved protein of unknown function compare
PP_5008 -1.0 -2.0 Poly granule-associated protein compare
PP_0949 -1.0 -3.3 putative ATP-binding protein UPF0042 compare
PP_2168 -1.0 -4.8 Transaldolase compare
PP_5230 -1.0 -2.8 Tyrosine recombinase XerC compare
PP_0753 -1.0 -5.7 putative Lipoprotein compare
PP_4722 -1.0 -2.5 Transcription elongation factor GreA compare
PP_2215 -1.0 -2.1 acetyl-CoA acetyltransferase compare
PP_2334 -1.0 -4.2 2-methylisocitrate lyase compare
PP_0948 -1.0 -1.6 Phosphocarrier protein HPr compare
PP_4067 -1.0 -5.6 methylcrotonyl-CoA carboxylase biotin-containing subunit alpha compare
PP_5557 -1.0 -2.0 protein of unknown function compare
PP_4199 -1.0 -1.1 putative Lipoprotein compare
PP_4937 -1.0 -3.5 toluene tolerance protein compare
PP_0117 -1.0 -4.0 Zn(2+) ABC transporter - permease subunit compare
PP_4941 -1.0 -4.7 conserved exported protein of unknown function compare
PP_1001 -1.0 -2.5 arginine deiminase compare
PP_4398 -1.0 -6.2 Major facilitator family transporter compare
PP_4359 -1.0 -4.3 Flagellar protein FliL compare
PP_4944 -1.0 -2.0 Carbamoyltransferase compare
PP_3866 -0.9 -2.5 conserved protein of unknown function compare
PP_2336 -0.9 -0.9 aconitate hydratase 1 compare
PP_2152 -0.9 -2.2 glycerophosphoryl diester phosphodiesterase compare
PP_2337 -0.9 -1.6 aconitate isomerase compare
PP_4286 -0.9 -4.4 allantoinase compare
PP_0339 -0.9 -0.9 Pyruvate dehydrogenase E1 component compare


Specific Phenotypes

For 1 genes in this experiment

For soil Soil=PNNL_Prosser_PlotA_B_20191220; Sterility=sterile; Collection=outgrowth_in_LB; SoilTreatment=coldshock; SoilTreatmentTime=144_hrs in Pseudomonas putida KT2440

For soil Soil=PNNL_Prosser_PlotA_B_20191220; Sterility=sterile; Collection=outgrowth_in_LB; SoilTreatment=coldshock; SoilTreatmentTime=144_hrs across organisms