Experiment set23IT068 for Pseudomonas putida KT2440

Compare to:

Soil=PNNL_Prosser_PlotA_B_20191220; Sterility=sterile; Collection=outgrowth_in_LB; SoilTreatment=coldshock; SoilTreatmentTime=144_hrs

200 most detrimental genes:

  gene name fitness t score description  
PP_1656 +2.5 10.2 ATP:GTP 3'-pyrophosphotransferase compare
PP_1655 +2.5 6.9 23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD compare
PP_1650 +1.6 10.5 Sensor protein GacS compare
PP_1550 +1.4 1.0 Transcriptional regulator, Cro/CI family compare
PP_4099 +1.4 7.9 two-componenent system BarA/UvrY - regulatory subunit compare
PP_0575 +1.4 3.6 conserved membrane protein of unknown function compare
PP_5017 +1.2 2.2 Sec-independent protein translocase protein TatB compare
PP_1381 +1.1 2.4 4-carboxymuconolactone decarboxylase compare
PP_1045 +1.1 1.2 Type II secretion pathway protein XcpP compare
PP_4504 +1.1 3.4 conserved exported protein of unknown function compare
PP_1097 +1.0 1.5 Methionine--tRNA ligase compare
PP_1938 +1.0 3.2 conserved protein of unknown function compare
PP_5423 +1.0 2.1 conserved membrane protein of unknown function compare
PP_4171 +1.0 7.6 conserved exported protein of unknown function compare
PP_4660 +0.9 4.1 Transcriptional regulator, LysR family compare
PP_2683 +0.9 2.9 putative sensory box histidine kinase/response regulator compare
PP_3241 +0.9 1.7 conserved exported protein of unknown function compare
PP_4701 +0.9 1.4 glucose-6-phosphate isomerase compare
PP_4561 +0.9 1.6 stress response protein compare
PP_2575 +0.9 1.7 conserved exported protein of unknown function compare
PP_3762 +0.8 3.9 Response regulator compare
PP_2503 +0.8 2.1 putative 3-oxoacyl-(Acyl-carrier-protein) reductase compare
PP_2254 +0.8 3.2 Transcriptional regulator, GntR family compare
PP_2354 +0.8 5.4 Sensory box histidine kinase/response regulator compare
PP_1269 +0.8 1.6 Universal stress protein family compare
PP_2972 +0.8 2.7 conserved protein of unknown function compare
PP_0512 +0.8 2.1 hypothetical protein compare
PP_5471 +0.8 2.2 putative response regulator receiver protein compare
PP_1062 +0.8 2.2 MutT/nudix family protein compare
PP_3052 +0.8 1.4 conserved protein of unknown function compare
PP_3693 +0.7 3.6 putative Transcriptional regulator MvaT, P16 subunit compare
PP_2530 +0.7 2.2 conserved protein of unknown function compare
PP_3098 +0.7 1.4 conserved protein of unknown function compare
PP_1020 +0.7 2.5 putative glucose-6-phosphate 1-epimerase compare
PP_2737 +0.7 1.2 Oxidoreductase, short-chain dehydrogenase/reductase family compare
PP_0653 +0.7 1.3 conserved protein of unknown function compare
PP_5558 +0.7 1.9 putative transcriptional xre family of phage origin compare
PP_4223 +0.7 1.3 diaminobutyrate-2-oxoglutarate transaminase compare
PP_5659 +0.7 1.6 protein of unknown function compare
PP_5241 +0.7 1.8 DNA-binding response regulator, LuxR family compare
PP_4246 +0.7 5.0 Periplasmic binding protein compare
PP_0683 +0.7 2.4 conserved protein of unknown function compare
PP_1833 +0.7 2.6 conserved protein of unknown function compare
PP_3726 +0.7 1.1 Enoyl-CoA hydratase/isomerase family protein compare
PP_2309 +0.7 1.4 conserved protein of unknown function compare
PP_4631 +0.7 2.1 conserved protein of unknown function compare
PP_1344 +0.7 1.6 conserved protein of unknown function compare
PP_5428 +0.7 2.5 conserved exported protein of unknown function compare
PP_0133 +0.7 4.8 Alginate biosynthesis transcriptional regulatory protein AlgB compare
PP_4828 +0.6 1.4 Precorrin-8X methylmutase compare
PP_2356 +0.6 4.3 putative Phytochrome family protein compare
PP_1410 +0.6 1.2 conserved protein of unknown function compare
PP_1001 +0.6 2.0 arginine deiminase compare
PP_4424 +0.6 1.3 Uncharacterized HTH-type transcriptional regulator y4tD compare
PP_5504 +0.6 2.4 conserved protein of unknown function compare
PP_2396 +0.6 2.1 conserved exported protein of unknown function compare
PP_3662 +0.6 3.1 conserved protein of unknown function compare
PP_1736 +0.6 1.6 conserved protein of unknown function compare
PP_1787 +0.6 3.0 conserved protein of unknown function compare
PP_0132 +0.6 3.7 Alginate biosynthesis sensor protein KinB compare
PP_2231 +0.6 2.5 putative permease of the drug/metabolite transporter (DMT) superfamily compare
PP_1415 +0.6 2.1 putative membrane associated enzyme subunit compare
PP_2070 +0.6 1.5 Transcriptional regulator, AraC family compare
PP_1674 +0.6 2.1 5,6-dimethylbenzimidazole synthase compare
PP_1633 +0.6 1.7 conserved exported protein of unknown function compare
PP_2592 +0.6 1.6 Ferric siderophore ABC transporter, ATP-binding protein compare
PP_4151 +0.6 2.8 Excisionase domain protein compare
PP_3487 +0.6 1.6 conserved exported protein of unknown function compare
PP_5541 +0.6 2.2 conserved protein of unknown function compare
PP_2725 +0.6 1.5 Protease PfpI compare
PP_2187 +0.6 2.3 Universal stress protein family compare
PP_4199 +0.5 0.9 putative Lipoprotein compare
PP_3116 +0.5 2.7 transcriptional repressor compare
PP_4419 +0.5 1.2 transposase compare
PP_3408 +0.5 1.3 cobalt transporter subunit A compare
PP_3904 +0.5 1.6 conserved protein of unknown function compare
PP_t12 +0.5 0.8 tRNA-Thr compare
PP_0508 +0.5 2.4 conserved exported protein of unknown function compare
PP_2765 +0.5 1.8 putative Sulfonate monooxygenase MsuD compare
PP_3539 +0.5 1.5 putative Transcriptional regulator compare
PP_3286 +0.5 2.5 DNA-binding transcriptional repressor PaaX(phenylacetyl-CoA) compare
PP_4734 +0.5 2.8 DNA-binding transcriptional dual regulator, LldR-L-lactate compare
PP_4100 +0.5 2.4 Transcriptional regulator, Cro/CI family compare
PP_3876 +0.5 1.1 conserved protein of unknown function compare
PP_3884 +0.5 2.0 Phage holin, lambda family compare
PP_2060 +0.5 1.5 DNA-binding transcriptional dual regulator - SoxR-reversible one-electron oxidation of its [2Fe-2S] cluster, NADPH-dependent compare
PP_2682 +0.5 1.6 Fe-containing alcohol dehydrogenase compare
PP_5695 +0.5 2.3 conserved protein of unknown function compare
PP_4531 +0.5 2.0 conserved exported protein of unknown function compare
PP_2899 +0.5 1.4 conserved exported protein of unknown function compare
PP_1261 +0.5 2.2 2-ketoaldonate reductase / hydroxypyruvate/glyoxylate reductase compare
PP_5144 +0.5 2.1 conserved protein of unknown function compare
PP_5580 +0.5 0.9 protein of unknown function compare
PP_2550 +0.5 1.4 putative transcriptional regulatory protein compare
PP_0999 +0.5 1.7 carbamate kinase compare
PP_4541 +0.5 2.0 peptidyl-prolyl cis-trans isomerase A (rotamase A) compare
PP_4196 +0.5 1.4 conserved exported protein of unknown function compare
PP_3467 +0.5 2.4 Sigma-54 dependent transcriptional regulator compare
PP_3757 +0.5 1.9 Chemotaxis protein CheY compare
PP_1605 +0.5 1.4 Ribonuclease HII compare
PP_2387 +0.5 1.2 conserved protein of unknown function compare
PP_0182 +0.5 2.1 conserved protein of unknown function compare
PP_4808 +0.5 1.0 23S rRNA m3psi1915 methyltransferase compare
PP_4159 +0.5 1.3 Potassium-transporting ATPase C chain compare
PP_4768 +0.5 1.6 Exonuclease compare
PP_2389 +0.5 2.8 conserved protein of unknown function compare
PP_3392 +0.5 1.0 conserved protein of unknown function compare
PP_2922 +0.5 1.7 Urea amidolyase-related protein compare
PP_1598 +0.5 2.4 regulatory intramembrane protein RIP zinc protease compare
PP_5279 +0.5 1.1 conserved protein of unknown function compare
PP_4581 +0.5 1.7 putative amidotransferase compare
PP_2159 +0.5 1.6 Copper-binding protein, plastocyanin/azurin family compare
PP_5240 +0.5 1.0 Response regulator compare
PP_3369 +0.5 1.5 Transcriptional regulator, LysR family compare
PP_4132 +0.5 2.6 conserved protein of unknown function compare
PP_1291 +0.5 2.9 PhoH family protein compare
PP_0770 +0.5 2.2 PemI-like protein compare
PP_3971 +0.5 1.1 conserved protein of unknown function compare
PP_1621 +0.5 2.2 Protein-L-isoaspartate O-methyltransferase compare
PP_0725 +0.5 1.3 conserved hypothetical TPR repeat protein compare
PP_4602 +0.5 2.0 Transcriptional regulator, AraC family compare
PP_0574 +0.5 3.5 DNA-binding response regulator, LuxR family compare
PP_5509 +0.5 2.4 conserved exported protein of unknown function compare
PP_2209 +0.5 1.9 2-aminoethylphosphonate--pyruvate transaminase compare
PP_3910 +0.4 2.4 conserved protein of unknown function compare
PP_2046 +0.4 1.1 Transcriptional regulator, LysR family compare
PP_4957 +0.4 1.9 conserved protein of unknown function compare
PP_5648 +0.4 1.5 conserved exported protein of unknown function compare
PP_3875 +0.4 1.8 conserved protein of unknown function compare
PP_5534 +0.4 1.9 protein of unknown function compare
PP_2640 +0.4 1.1 Acetyltransferase, GNAT family compare
PP_5562 +0.4 2.0 conserved protein of unknown function compare
PP_0685 +0.4 0.8 conserved protein of unknown function compare
PP_3891 +0.4 1.3 conserved protein of unknown function compare
PP_2954 +0.4 1.9 conserved protein of unknown function compare
PP_1102 +0.4 1.9 conserved protein of unknown function compare
PP_1892 +0.4 1.6 conserved protein of unknown function compare
PP_2281 +0.4 1.8 putative Capsid assembly protein compare
PP_3307 +0.4 1.2 conserved protein of unknown function compare
PP_0608 +0.4 1.6 putative type 4 fimbrial biogenesis protein compare
PP_2146 +0.4 3.1 helicase SNF2/RAD54 family compare
PP_4163 +0.4 1.7 conserved exported protein of unknown function compare
PP_1630 +0.4 2.1 Regulatory protein RecX compare
PP_1759 +0.4 2.3 conserved exported protein of unknown function compare
PP_3836 +0.4 2.3 conserved protein of unknown function compare
PP_5566 +0.4 1.8 protein of unknown function compare
PP_0337 +0.4 2.9 Sensory box protein compare
PP_3892 +0.4 0.8 conserved protein of unknown function compare
PP_2602 +0.4 2.1 putative 4-carboxy-2-hydroxymuconate-6-semialdehyde dehydrogenase compare
PP_5556 +0.4 1.8 putative bacteriophage lysis protein compare
PP_5666 +0.4 1.9 putative microcin B17-like processing protein, McbB family compare
PP_3919 +0.4 1.2 conserved protein of unknown function compare
PP_1861 +0.4 2.3 Transcriptional regulator, LysR family compare
PP_4288 +0.4 1.5 ureidoglycolate lyase compare
PP_1562 +0.4 0.7 putative Phage terminase, small subunit compare
PP_0269 +0.4 2.1 putative Glutamate synthase, large subunit compare
PP_0639 +0.4 1.7 conserved protein of unknown function compare
PP_3527 +0.4 2.7 Transcriptional regulator, TetR family compare
PP_1012 +0.4 1.3 DNA-binding response regulator compare
PP_0134 +0.4 2.3 conserved exported protein of unknown function compare
PP_4073 +0.4 1.3 conserved exported protein of unknown function compare
PP_2132 +0.4 1.8 Universal stress protein compare
PP_1455 +0.4 1.4 conserved protein of unknown function compare
PP_1427 +0.4 2.4 RNA polymerase sigma E factor compare
PP_2677 +0.4 1.5 conserved exported protein of unknown function compare
PP_4265 +0.4 0.3 DNA-binding transcriptional dual regulator compare
PP_2414 +0.4 0.8 conserved exported protein of unknown function compare
PP_5610 +0.4 0.9 protein of unknown function compare
PP_4930 +0.4 1.1 putative small multidrug resistance protein compare
PP_3153 +0.4 2.1 conserved exported protein of unknown function compare
PP_4001 +0.4 1.7 Putative fluoride ion transporter CrcB compare
PP_1742 +0.4 1.6 conserved inner membrane protein of unknown function compare
PP_0333 +0.4 2.0 conserved exported protein of unknown function compare
PP_1660 +0.4 1.8 conserved protein of unknown function compare
PP_2936 +0.4 2.6 putative ATP-binding component of a transport system compare
PP_0278 +0.4 1.8 conserved protein of unknown function compare
PP_5451 +0.4 1.3 protein of unknown function compare
PP_1422 +0.4 2.0 conserved protein of unknown function compare
PP_1790 +0.4 1.4 putative Acylneuraminate cytidylyltransferase compare
PP_2406 +0.4 1.3 putative quinate/shikimate dehydrogenase compare
PP_3962 +0.4 2.5 conserved protein of unknown function compare
PP_0579 +0.4 1.6 conserved protein of unknown function compare
PP_0201 +0.4 2.1 conserved protein of unknown function compare
PP_5735 +0.4 1.5 conserved hypothetical protein compare
PP_4166 +0.4 1.8 conserved protein of unknown function compare
PP_4254 +0.4 0.5 conserved protein of unknown function compare
PP_2747 +0.4 0.6 conserved protein of unknown function compare
PP_1366 +0.4 0.4 Transcriptional regulator MvaT, P16 subunit compare
PP_4630 +0.4 1.5 Transcriptional regulator, MerR family compare
PP_1795 +0.4 2.7 conserved protein of unknown function compare
PP_3837 +0.4 0.8 inner membrane protein of unknown function compare
PP_1164 +0.4 1.0 Transcriptional regulator, LysR family compare
PP_1814 +0.4 0.9 conserved protein of unknown function compare
PP_4074 +0.4 1.3 conserved protein of unknown function compare
PP_4608 +0.4 1.7 RNA polymerase sigma-70 factor, ECF subfamily compare
PP_3444 +0.4 1.5 Glyoxalase family protein compare
PP_3163 +0.4 2.0 benzoate 1,2-dioxygenase electron transfer component compare
PP_3314 +0.4 1.7 Heat shock protein, HSP20 family compare
PP_1011 +0.4 2.1 glucokinase compare
PP_0534 +0.4 1.8 putative Transcriptional regulator PfeR compare


Specific Phenotypes

None in this experiment

For Pseudomonas putida KT2440 in soil experiments

For soil Soil=PNNL_Prosser_PlotA_B_20191220; Sterility=sterile; Collection=outgrowth_in_LB; SoilTreatment=coldshock; SoilTreatmentTime=144_hrs across organisms