Experiment set23IT067 for Pseudomonas putida KT2440

Compare to:

Soil=PNNL_Prosser_PlotA_B_20191220; Sterility=sterile; Collection=outgrowth_in_LB; SoilTreatment=coldshock; SoilTreatmentTime=144_hrs

200 most detrimental genes:

  gene name fitness t score description  
PP_1655 +2.3 7.7 23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD compare
PP_1656 +2.1 9.4 ATP:GTP 3'-pyrophosphotransferase compare
PP_1650 +2.0 13.7 Sensor protein GacS compare
PP_4099 +1.9 10.9 two-componenent system BarA/UvrY - regulatory subunit compare
PP_0653 +1.7 4.1 conserved protein of unknown function compare
PP_0319 +1.2 3.2 conserved protein of unknown function compare
PP_4171 +1.2 9.3 conserved exported protein of unknown function compare
PP_4073 +1.2 2.6 conserved exported protein of unknown function compare
PP_3762 +1.1 3.1 Response regulator compare
PP_3052 +1.1 2.2 conserved protein of unknown function compare
PP_1528 +1.1 1.6 conserved protein of unknown function compare
PP_3726 +1.0 1.9 Enoyl-CoA hydratase/isomerase family protein compare
PP_1045 +1.0 1.3 Type II secretion pathway protein XcpP compare
PP_4271 +0.9 1.5 conserved protein of unknown function compare
PP_2231 +0.9 3.6 putative permease of the drug/metabolite transporter (DMT) superfamily compare
PP_5519 +0.9 2.5 conserved protein of unknown function of phage origin compare
PP_2683 +0.9 2.8 putative sensory box histidine kinase/response regulator compare
PP_3241 +0.9 1.7 conserved exported protein of unknown function compare
PP_0025 +0.9 1.9 hypothetical protein compare
PP_2060 +0.9 1.5 DNA-binding transcriptional dual regulator - SoxR-reversible one-electron oxidation of its [2Fe-2S] cluster, NADPH-dependent compare
PP_0574 +0.9 6.8 DNA-binding response regulator, LuxR family compare
PP_2737 +0.9 2.4 Oxidoreductase, short-chain dehydrogenase/reductase family compare
PP_2087 +0.9 1.4 CmpX protein compare
PP_0133 +0.8 6.0 Alginate biosynthesis transcriptional regulatory protein AlgB compare
PP_0575 +0.8 3.0 conserved membrane protein of unknown function compare
PP_5648 +0.8 4.1 conserved exported protein of unknown function compare
PP_1938 +0.8 1.1 conserved protein of unknown function compare
PP_1301 +0.8 4.0 quality control serine endoprotease DegS compare
PP_1508 +0.8 3.2 conserved protein of unknown function compare
PP_3810 +0.8 2.9 conserved protein of unknown function compare
PP_2885 +0.8 3.8 putative Transporter compare
PP_5017 +0.8 1.3 Sec-independent protein translocase protein TatB compare
PP_1562 +0.8 2.0 putative Phage terminase, small subunit compare
PP_2354 +0.7 5.2 Sensory box histidine kinase/response regulator compare
PP_4156 +0.7 2.3 Transcriptional regulator, LysR family compare
PP_2677 +0.7 2.6 conserved exported protein of unknown function compare
PP_5039 +0.7 1.2 conserved protein of unknown function compare
PP_3643 +0.7 1.8 putative Oxidoreductase compare
PP_0132 +0.7 3.0 Alginate biosynthesis sensor protein KinB compare
PP_4720 +0.7 2.3 putative RNA binding protein compare
PP_1404 +0.7 2.5 conserved protein of unknown function compare
PP_1062 +0.7 1.9 MutT/nudix family protein compare
PP_2759 +0.6 3.2 ribose ABC transporter - ATP-binding subunit compare
PP_0593 +0.6 1.1 putative ribosome-binding factor compare
PP_1214 +0.6 1.7 putative transcriptional regulatory protein compare
PP_3837 +0.6 2.5 inner membrane protein of unknown function compare
PP_5359 +0.6 2.4 CobW/P47K family protein compare
PP_3904 +0.6 1.7 conserved protein of unknown function compare
PP_0152 +0.6 2.6 conserved exported protein of unknown function compare
PP_1310 +0.6 1.7 conserved hypothetical protein compare
PP_1353 +0.6 1.1 conserved membrane protein of unknown function compare
PP_3346 +0.6 2.4 Nickel transporter ATP-binding protein compare
PP_0195 +0.6 1.5 conserved protein of unknown function compare
PP_2356 +0.6 3.9 putative Phytochrome family protein compare
PP_0360 +0.6 3.2 Molybdate transport regulator compare
PP_2281 +0.6 2.5 putative Capsid assembly protein compare
PP_5272 +0.6 2.5 conserved protein of unknown function compare
PP_0841 +0.6 1.5 DNA-binding transcriptional dual regulator 2Fe-2S cluster IscR compare
PP_1546 +0.6 2.1 conserved protein of unknown function compare
PP_4100 +0.6 2.8 Transcriptional regulator, Cro/CI family compare
PP_2227 +0.6 2.7 putative Multicomponent potassium-proton antiporter, subunit E compare
PP_0685 +0.6 1.1 conserved protein of unknown function compare
PP_2970 +0.6 2.5 conserved exported protein of unknown function compare
PP_1410 +0.6 1.0 conserved protein of unknown function compare
PP_4986 +0.6 3.3 Channel protein, hemolysin III family compare
PP_2922 +0.6 2.5 Urea amidolyase-related protein compare
PP_5558 +0.6 1.9 putative transcriptional xre family of phage origin compare
PP_1833 +0.6 2.9 conserved protein of unknown function compare
PP_0616 +0.6 2.3 Branched-chain amino acid ABC transporter, ATP binding protein compare
PP_2681 +0.6 1.6 coenzyme PQQ synthesis protein D compare
PP_3766 +0.6 1.1 Lactoylglutathione lyase compare
PP_0340 +0.6 4.2 Glutamate-ammonia-ligase adenylyltransferase compare
PP_2848 +0.6 2.5 urease accessory protein compare
PP_4569 +0.6 1.0 conserved protein of unknown function compare
PP_2826 +0.6 1.5 Transcriptional regulator MexT compare
PP_4406 +0.5 2.3 conserved protein of unknown function compare
PP_4734 +0.5 3.5 DNA-binding transcriptional dual regulator, LldR-L-lactate compare
PP_1633 +0.5 1.6 conserved exported protein of unknown function compare
PP_2835 +0.5 1.9 putative oxidoreductase compare
PP_4982 +0.5 1.8 putative cytochrome b561, iron-regulated compare
PP_2653 +0.5 2.7 Transcriptional regulator, Cro/CI family compare
PP_5488 +0.5 2.0 conserved protein of unknown function compare
PP_3449 +0.5 1.7 conserved exported protein of unknown function compare
PP_4246 +0.5 3.8 Periplasmic binding protein compare
PP_5505 +0.5 2.0 conserved transmembrane protein of unknown function compare
PP_1235 +0.5 2.4 AhpC/TSA family protein compare
PP_0683 +0.5 1.3 conserved protein of unknown function compare
PP_4226 +0.5 1.4 conserved protein of unknown function compare
PP_3239 +0.5 1.4 putative cointegrate resolution protein T Tn4652 compare
PP_5022 +0.5 1.3 Glutamine transport ATP-binding protein GlnQ compare
PP_3318 +0.5 1.1 conserved protein of unknown function compare
PP_0856 +0.5 0.6 conserved lipoprotein of unknown function compare
PP_4482 +0.5 1.6 Transcriptional regulator, AraC family compare
PP_4930 +0.5 2.2 putative small multidrug resistance protein compare
PP_1071 +0.5 2.4 glutamate / aspartate ABC transporter - periplasmic binding protein compare
PP_2306 +0.5 1.6 conserved exported protein of unknown function compare
PP_3749 +0.5 2.0 conserved protein of unknown function compare
PP_5556 +0.5 2.0 putative bacteriophage lysis protein compare
PP_5428 +0.5 2.2 conserved exported protein of unknown function compare
PP_0831 +0.5 2.1 hypothetical protein compare
PP_2537 +0.5 2.3 conserved protein of unknown function compare
PP_0820 +0.5 2.3 GCN5-related N-acetyltransferase compare
PP_1002 +0.5 1.8 arginine/ornithine antiporter compare
PP_1583 +0.5 2.1 putative Structural protein P5 compare
PP_4135 +0.5 2.2 conserved protein of unknown function compare
PP_1605 +0.5 1.3 Ribonuclease HII compare
PP_3280 +0.5 1.6 3-oxoadipyl-CoA/3-oxo-5,6-dehydrosuberyl-CoA thiolase compare
PP_5170 +0.5 2.1 sulfate ABC transporter, inner membrane subunit CysT compare
PP_1736 +0.5 1.3 conserved protein of unknown function compare
PP_5032 +0.5 2.3 Histidine ammonia-lyase compare
PP_3523 +0.5 1.7 conserved protein of unknown function compare
PP_5571 +0.5 0.9 conserved protein of unknown function compare
PP_2222 +0.5 1.6 conserved protein of unknown function compare
PP_0512 +0.5 1.2 hypothetical protein compare
PP_1621 +0.4 2.1 Protein-L-isoaspartate O-methyltransferase compare
PP_1427 +0.4 2.8 RNA polymerase sigma E factor compare
PP_5096 +0.4 2.1 putative factor involved in shape determination compare
PP_3247 +0.4 1.1 Transporter, bile acid/Na+ symporter family compare
PP_2864 +0.4 1.2 conserved protein of unknown function compare
PP_0859 +0.4 2.1 putative ketoglutaramate omega-amidase compare
PP_5058 +0.4 2.0 Carboxy-terminal-processing protease compare
PP_4752 +0.4 2.5 putative Xaa-Pro aminopeptidase compare
PP_1442 +0.4 1.6 conserved protein of unknown function compare
PP_3237 +0.4 2.4 Universal stress protein family compare
PP_5452 +0.4 1.9 protein of unknown function compare
PP_1875 +0.4 3.0 Sensor histidine kinase/response regulator compare
PP_5566 +0.4 1.7 protein of unknown function compare
PP_3880 +0.4 1.0 conserved exported protein of unknown function compare
PP_3773 +0.4 1.2 conserved protein of unknown function compare
PP_5339 +0.4 1.0 transcriptional regulator, ornithine utilization compare
PP_4738 +0.4 1.2 conserved exported protein of unknown function compare
PP_1967 +0.4 2.2 tRNA D-aminoacylase compare
PP_4957 +0.4 1.8 conserved protein of unknown function compare
PP_2661 +0.4 2.1 conserved protein of unknown function compare
PP_1861 +0.4 2.8 Transcriptional regulator, LysR family compare
PP_1554 +0.4 1.1 conserved protein of unknown function compare
PP_4109 +0.4 1.3 conserved protein of unknown function compare
PP_2046 +0.4 1.7 Transcriptional regulator, LysR family compare
PP_1381 +0.4 0.7 4-carboxymuconolactone decarboxylase compare
PP_0921 +0.4 1.4 Transcriptional regulator, ArsR family compare
PP_3693 +0.4 1.7 putative Transcriptional regulator MvaT, P16 subunit compare
PP_3527 +0.4 2.8 Transcriptional regulator, TetR family compare
PP_5552 +0.4 0.7 conserved protein of unknown function compare
PP_2389 +0.4 2.1 conserved protein of unknown function compare
PP_4139 +0.4 1.4 conserved protein of unknown function compare
PP_3817 +0.4 1.5 Polyamine ABC transporter, ATP-binding protein compare
PP_4423 +0.4 2.0 conserved protein of unknown function compare
PP_5547 +0.4 1.8 protein of unknown function compare
PP_1013 +0.4 2.0 Sensor histidine kinase compare
PP_2044 +0.4 1.1 conserved inner membrane protein of unknown function compare
PP_5528 +0.4 0.7 conserved protein of unknown function compare
PP_4173 +0.4 2.5 Sensor histidine kinase/response regulator compare
PP_5367 +0.4 1.7 Transketolase domain protein compare
PP_1676 +0.4 1.9 subunit of adenosylcobinamide-phosphate synthase beta component compare
PP_1824 +0.4 0.6 Smr domain protein compare
PP_2196 +0.4 0.7 agmatinase compare
PP_3081 +0.4 1.1 conserved protein of unknown function compare
PP_0874 +0.4 0.6 conserved protein of unknown function compare
PP_0534 +0.4 1.8 putative Transcriptional regulator PfeR compare
PP_0357 +0.4 2.0 ACT domain protein compare
PP_2649 +0.4 1.9 Transcriptional regulator, LysR family compare
PP_2575 +0.4 0.9 conserved exported protein of unknown function compare
PP_4999 +0.4 0.2 dihydroorotase-like protein compare
PP_2159 +0.4 1.6 Copper-binding protein, plastocyanin/azurin family compare
PP_2857 +0.4 1.2 conserved exported protein of unknown function compare
PP_3480 +0.4 1.4 conserved protein of unknown function compare
PP_0168 +0.4 3.6 putative surface adhesion protein compare
PP_0066 +0.4 1.4 Ribosomal RNA small subunit methyltransferase B compare
PP_0238 +0.4 2.2 alkanesulfonate monooxygenase compare
PP_0086 +0.4 1.2 conserved protein of unknown function compare
PP_4631 +0.4 1.5 conserved protein of unknown function compare
PP_4799 +0.4 0.2 putative Muramoyltetrapeptide carboxypeptidase compare
PP_4254 +0.4 0.8 conserved protein of unknown function compare
PP_5701 +0.4 1.0 conserved protein of unknown function compare
PP_3467 +0.4 1.2 Sigma-54 dependent transcriptional regulator compare
PP_2682 +0.4 1.4 Fe-containing alcohol dehydrogenase compare
PP_4483 +0.4 2.2 histidine lysine / arginine / ornithine ABC transporter - ATP binding subunit compare
PP_5152 +0.4 1.4 conserved exported protein of unknown function compare
PP_5451 +0.4 1.5 protein of unknown function compare
PP_2071 +0.4 1.8 conserved protein of unknown function compare
PP_5225 +0.4 0.7 frataxin compare
PP_4861 +0.4 2.2 conserved protein of unknown function compare
PP_3761 +0.4 3.1 Sensor histidine kinase/response regulator compare
PP_0271 +0.4 2.0 DNA-binding response regulator compare
PP_4625 +0.4 1.1 anti-holin regulator of holin CidA compare
PP_1170 +0.4 2.0 D-glucaro-1,5-lactonase UxuL (from data) compare
PP_0167 +0.4 3.2 Toxin secretion ATP-binding protein compare
PP_4817 +0.4 1.0 MaoC domain protein compare
PP_3571 +0.4 1.8 putative Acetylornithine deacetylase compare
PP_5541 +0.4 2.0 conserved protein of unknown function compare
PP_5509 +0.4 2.3 conserved exported protein of unknown function compare
PP_2836 +0.4 1.6 putative 2-keto-3-deoxyxylonate dehydratase compare
PP_4630 +0.4 1.6 Transcriptional regulator, MerR family compare
PP_5575 +0.4 1.0 conserved protein of unknown function compare
PP_0656 +0.4 2.3 putative Amino acid ABC transporter, permease protein compare
PP_4015 +0.4 1.9 HflD-like high frequency lysogenization protein compare
PP_2941 +0.4 2.3 conserved protein of unknown function compare
PP_3136 +0.4 1.4 putative O-acetyltransferase compare
PP_4787 +0.4 0.9 putative protein with nucleoside triphosphate hydrolase domain compare
PP_0166 +0.4 2.9 HlyD family secretion protein compare


Specific Phenotypes

For 1 genes in this experiment

For soil Soil=PNNL_Prosser_PlotA_B_20191220; Sterility=sterile; Collection=outgrowth_in_LB; SoilTreatment=coldshock; SoilTreatmentTime=144_hrs in Pseudomonas putida KT2440

For soil Soil=PNNL_Prosser_PlotA_B_20191220; Sterility=sterile; Collection=outgrowth_in_LB; SoilTreatment=coldshock; SoilTreatmentTime=144_hrs across organisms