Experiment set23IT057 for Pseudomonas putida KT2440

Compare to:

Soil=PNNL_Prosser_PlotA_B_20191220; Sterility=sterile; Collection=outgrowth_in_LB_2hrs_then_extra_outgrowth_in_LB; SoilTreatment=coldshock; SoilTreatmentTime=72_hrs

200 most detrimental genes:

  gene name fitness t score description  
PP_1650 +3.9 36.2 Sensor protein GacS compare
PP_4099 +3.9 28.2 two-componenent system BarA/UvrY - regulatory subunit compare
PP_1656 +3.4 12.0 ATP:GTP 3'-pyrophosphotransferase compare
PP_1655 +3.2 7.4 23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD compare
PP_4171 +1.8 12.2 conserved exported protein of unknown function compare
PP_4999 +1.3 0.6 dihydroorotase-like protein compare
PP_4799 +1.2 0.6 putative Muramoyltetrapeptide carboxypeptidase compare
PP_0574 +1.2 10.1 DNA-binding response regulator, LuxR family compare
PP_0691 +1.2 0.6 Glutamate 5-kinase compare
PP_0856 +1.1 1.3 conserved lipoprotein of unknown function compare
PP_4373 +1.1 10.2 Transcriptional regulator FleQ compare
PP_4265 +1.1 0.9 DNA-binding transcriptional dual regulator compare
PP_1208 +1.0 1.3 conserved protein of unknown function, SlyX family compare
PP_0340 +1.0 8.1 Glutamate-ammonia-ligase adenylyltransferase compare
PP_1654 +1.0 0.6 cysteine synthase B compare
PP_0566 +0.9 1.5 translation-related factor compare
PP_5053 +0.9 5.8 Protein-export protein SecB compare
PP_0132 +0.8 4.6 Alginate biosynthesis sensor protein KinB compare
PP_3052 +0.8 1.7 conserved protein of unknown function compare
PP_3903 +0.8 2.7 conserved protein of unknown function compare
PP_1713 +0.8 2.4 Transcriptional regulator PcaQ compare
PP_1562 +0.8 2.3 putative Phage terminase, small subunit compare
PP_4217 +0.8 7.4 outer membrane ferripyoverdine receptor FpvA, TonB-dependent compare
PP_4724 +0.8 0.5 Carbamoyl-phosphate synthase small chain compare
PP_1176 +0.8 1.7 conserved protein of unknown function compare
PP_2668 +0.8 3.3 ABC efflux transporter, ATP-binding protein compare
PP_5240 +0.8 3.0 Response regulator compare
PP_4073 +0.8 2.8 conserved exported protein of unknown function compare
PP_0167 +0.8 6.6 Toxin secretion ATP-binding protein compare
PP_0166 +0.7 6.6 HlyD family secretion protein compare
PP_5546 +0.7 2.2 conserved protein of unknown function compare
PP_1113 +0.7 5.8 Pyridoxal-phosphate dependent enzyme family protein compare
PP_0719 +0.7 0.7 ribosome-associated potassium-dependent informational ATP/GTPase compare
PP_2633 +0.7 1.3 conserved protein of unknown function compare
PP_2107 +0.7 0.9 conserved protein of unknown function compare
PP_1310 +0.7 1.5 conserved hypothetical protein compare
PP_2000 +0.7 0.9 amidophosphoribosyl transferase compare
PP_4173 +0.7 5.0 Sensor histidine kinase/response regulator compare
PP_3762 +0.7 1.7 Response regulator compare
PP_4723 +0.7 0.5 Carbamoyl-phosphate synthase large chain compare
PP_0630 +0.7 1.2 DNA gyrase inhibitor YacG compare
PP_2798 +0.7 2.9 putative Oxidoreductase compare
PP_0168 +0.7 6.3 putative surface adhesion protein compare
PP_2070 +0.7 2.0 Transcriptional regulator, AraC family compare
PP_4246 +0.6 4.9 Periplasmic binding protein compare
PP_1269 +0.6 1.3 Universal stress protein family compare
PP_3307 +0.6 1.3 conserved protein of unknown function compare
PP_0165 +0.6 5.7 GGDEF domain protein compare
PP_1479 +0.6 2.6 HicB protein compare
PP_5610 +0.6 1.6 protein of unknown function compare
PP_4693 +0.6 1.9 RNA polymerase-binding transcription factor DksA compare
PP_4156 +0.6 2.7 Transcriptional regulator, LysR family compare
PP_2972 +0.6 2.2 conserved protein of unknown function compare
PP_5241 +0.6 1.4 DNA-binding response regulator, LuxR family compare
PP_1110 +0.6 1.8 serine acetyltransferase compare
PP_0575 +0.6 3.0 conserved membrane protein of unknown function compare
PP_5225 +0.6 1.3 frataxin compare
PP_0133 +0.6 4.7 Alginate biosynthesis transcriptional regulatory protein AlgB compare
PP_2580 +0.6 2.2 conserved protein of unknown function compare
PP_1568 +0.6 1.1 conserved protein of unknown function compare
PP_1109 +0.6 4.7 Transcriptional regulator, GntR family compare
PP_4166 +0.6 2.8 conserved protein of unknown function compare
PP_3643 +0.6 2.1 putative Oxidoreductase compare
PP_2354 +0.6 3.8 Sensory box histidine kinase/response regulator compare
PP_5491 +0.6 1.3 conserved protein of unknown function with SEC-C motif domain compare
PP_4519 +0.6 4.9 Agglutination protein compare
PP_3037 +0.6 2.7 C4-type zinc finger protein, DksA/TraR family compare
PP_2759 +0.6 2.1 ribose ABC transporter - ATP-binding subunit compare
PP_5654 +0.5 1.9 putative phosphotriesterase compare
PP_5735 +0.5 2.1 conserved hypothetical protein compare
PP_1742 +0.5 2.4 conserved inner membrane protein of unknown function compare
PP_5358 +0.5 2.2 conserved protein of unknown function compare
PP_5027 +0.5 1.6 D-tyrosyl-tRNA(Tyr) deacylase compare
PP_2950 +0.5 2.3 conserved protein of unknown function compare
PP_1736 +0.5 1.6 conserved protein of unknown function compare
PP_5582 +0.5 1.2 conserved protein of unknown function compare
PP_4363 +0.5 4.4 Sensor histidine kinase/response regulator compare
PP_0990 +0.5 2.5 DoxX family protein compare
PP_0959 +0.5 1.4 phospholipid ABC transporter compare
PP_2153 +0.5 1.7 conserved protein of unknown function compare
PP_1812 +0.5 2.0 conserved protein of unknown function compare
PP_3117 +0.5 2.2 putative protein involved in error-prone processing of DNA lesions compare
PP_2514 +0.5 2.9 4-carboxy-4-hydroxy-2-oxoadipic acid aldolase compare
PP_3766 +0.5 1.6 Lactoylglutathione lyase compare
PP_5552 +0.5 1.6 conserved protein of unknown function compare
PP_0998 +0.5 2.6 conserved protein of unknown function compare
PP_0276 +0.5 1.0 Transcriptional regulator, Cro/CI family compare
PP_2826 +0.5 1.8 Transcriptional regulator MexT compare
PP_2197 +0.5 1.4 conserved exported protein of unknown function compare
PP_2232 +0.5 2.3 XRE family transcriptional regulator compare
PP_0040 +0.5 1.0 hypothetical protein compare
PP_3876 +0.5 1.7 conserved protein of unknown function compare
PP_4959 +0.5 4.0 diguanylate cyclase compare
PP_2274 +0.5 2.0 conserved protein of unknown function compare
PP_4961 +0.5 1.2 putative Lipoprotein compare
PP_3761 +0.5 4.0 Sensor histidine kinase/response regulator compare
PP_1299 +0.5 2.8 putative amino acid ABC transporter - membrane subunit compare
PP_5232 +0.5 1.6 conserved protein of unknown function compare
PP_5541 +0.5 1.5 conserved protein of unknown function compare
PP_4100 +0.5 1.8 Transcriptional regulator, Cro/CI family compare
PP_2159 +0.5 1.6 Copper-binding protein, plastocyanin/azurin family compare
PP_1112 +0.5 3.3 conserved membrane protein of unknown function compare
PP_2889 +0.5 2.8 putative Transmembrane regulator PrtR compare
PP_2356 +0.5 2.9 putative Phytochrome family protein compare
PP_1967 +0.5 2.1 tRNA D-aminoacylase compare
PP_0938 +0.5 3.0 conserved protein of unknown function compare
PP_5618 +0.5 2.8 putative Cro/CI transcriptional regulator compare
PP_1301 +0.5 2.9 quality control serine endoprotease DegS compare
PP_5022 +0.5 1.2 Glutamine transport ATP-binding protein GlnQ compare
PP_1364 +0.4 3.4 conserved exported protein of unknown function compare
PP_4925 +0.4 1.2 conserved protein of unknown function compare
PP_3831 +0.4 2.4 conserved protein of unknown function compare
PP_4172 +0.4 2.1 conserved exported protein of unknown function compare
PP_4451 +0.4 1.7 conserved protein of unknown function compare
PP_3245 +0.4 1.1 conserved protein of unknown function compare
PP_2794 +0.4 1.5 Oxidoreductase, short chain dehydrogenase/reductase family compare
PP_3760 +0.4 2.3 putative methyltransferase compare
PP_1038 +0.4 1.1 conserved protein of unknown function compare
PP_0022 +0.4 0.7 hypothetical protein compare
PP_3110 +0.4 1.0 protein of unknown function compare
PP_2793 +0.4 0.7 Acyl-CoA dehydrogenase family protein compare
PP_4662 +0.4 1.8 conserved protein of unknown function compare
PP_3241 +0.4 0.8 conserved exported protein of unknown function compare
PP_2497 +0.4 1.3 conserved protein of unknown function compare
PP_5453 +0.4 1.2 conserved protein of unknown function compare
PP_3346 +0.4 1.1 Nickel transporter ATP-binding protein compare
PP_2231 +0.4 0.8 putative permease of the drug/metabolite transporter (DMT) superfamily compare
PP_1002 +0.4 1.7 arginine/ornithine antiporter compare
PP_1238 +0.4 2.4 putative Lipoprotein compare
PP_5705 +0.4 0.7 protein of unknown function compare
PP_1761 +0.4 3.3 diguanylate cyclase with phosphodiesterase domain compare
PP_0711 +0.4 0.9 putative hydrolase compare
PP_4419 +0.4 1.2 transposase compare
PP_5688 +0.4 1.8 putative NAD(FAD)-dependent dehydrogenase with Fer2_4 domain compare
PP_0153 +0.4 0.6 hypothetical protein compare
PP_3286 +0.4 1.8 DNA-binding transcriptional repressor PaaX(phenylacetyl-CoA) compare
PP_2280 +0.4 1.6 conserved protein of unknown function compare
PP_1833 +0.4 1.6 conserved protein of unknown function compare
PP_2041 +0.4 2.1 Transcriptional regulator, LysR family compare
PP_0948 +0.4 0.9 Phosphocarrier protein HPr compare
PP_4540 +0.4 2.2 Hydrolase, alpha/beta fold family compare
PP_5451 +0.4 1.4 protein of unknown function compare
PP_0611 +0.4 1.8 Type IV pili biogenesis protein PilE compare
PP_0754 +0.4 1.5 conserved protein of unknown function compare
PP_1690 +0.4 1.8 conserved protein of unknown function compare
PP_4266 +0.4 1.7 Adenine phosphoribosyltransferase compare
PP_2388 +0.4 1.0 Transporter, LysE family compare
PP_1070 +0.4 1.8 glutamate / aspartate ABC transporter - permease subunit compare
PP_4700 +0.4 0.6 pantothenate synthetase compare
PP_4629 +0.4 1.9 Sensory box protein compare
PP_4258 +0.4 1.2 cytochrome c oxidase subunit, cbb3-type compare
PP_5156 +0.4 2.3 conserved exported protein of unknown function compare
PP_4459 +0.4 2.7 transposase compare
PP_3473 +0.4 1.8 curli secretion and assembly outer membrane associated component compare
PP_0278 +0.4 1.6 conserved protein of unknown function compare
PP_5690 +0.4 2.2 conserved protein of unknown function compare
PP_5331 +0.4 1.5 Long-chain acyl-CoA thioester hydrolase compare
PP_4208 +0.4 2.4 RNA polymerase sigma-70 factor, ECF subfamily compare
PP_1647 +0.4 1.8 conserved protein of unknown function compare
PP_4721 +0.4 2.3 conserved membrane protein of unknown function compare
PP_5528 +0.4 0.8 conserved protein of unknown function compare
PP_3855 +0.4 1.7 conserved protein of unknown function compare
PP_1439 +0.4 0.8 conserved exported protein of unknown function compare
PP_2681 +0.4 1.1 coenzyme PQQ synthesis protein D compare
PP_2103 +0.4 1.1 conserved protein of unknown function compare
PP_1147 +0.4 1.1 conserved protein of unknown function compare
PP_5359 +0.4 0.8 CobW/P47K family protein compare
PP_4997 +0.4 0.5 pyrimidine operon regulatory protein/uracil phosphoribosyltransferase compare
PP_0666 +0.4 1.1 conserved protein of unknown function compare
PP_4793 +0.4 1.1 conserved protein of unknown function compare
PP_5066 +0.4 1.9 K(+)/H(+) antiporter NhaP2 compare
PP_4687 +0.4 1.7 Hemin import ATP-binding protein HmuV compare
PP_5272 +0.4 2.1 conserved protein of unknown function compare
PP_3043 +0.4 1.0 conserved protein of unknown function compare
PP_0685 +0.4 0.9 conserved protein of unknown function compare
PP_2071 +0.4 2.0 conserved protein of unknown function compare
PP_4247 +0.4 0.9 Exonuclease compare
PP_2062 +0.4 2.0 conserved protein of unknown function compare
PP_1369 +0.4 1.9 conserved protein of unknown function compare
PP_1074 +0.4 1.3 DNA-binding transcriptional repressor - GlpR-glycerol-3-phosphate compare
PP_2761 +0.4 2.2 putative Ribose ABC transporter, permease protein compare
PP_1008 +0.4 1.0 RNA polymerase subunit sigma-24 compare
PP_4050 +0.4 3.2 glycogen synthase compare
PP_0235 +0.4 1.7 Peroxidase compare
PP_5621 +0.4 1.2 protein of unknown function compare
PP_0899 +0.4 2.2 putative Ferredoxin reductase compare
PP_4710 +0.4 2.4 tRNA pseudouridine 55 synthase compare
PP_3058 +0.4 1.7 conserved protein of unknown function compare
PP_1328 +0.3 0.5 Protein MraZ compare
PP_2125 +0.3 1.8 lipid kinase compare
PP_1632 +0.3 0.9 conserved protein of unknown function compare
PP_0802 +0.3 2.0 putative chemotaxis protein compare
PP_1626 +0.3 1.9 DNA mismatch repair protein MutS compare
PP_3054 +0.3 1.6 Pyocin R2_PP, baseplate/tail fiber protein compare
PP_2931 +0.3 0.9 conserved protein of unknown function compare
PP_1494 +0.3 1.6 Response regulator/GGDEF domain protein compare
PP_1891 +0.3 1.8 Type 1 pili subunit FimI compare
PP_0512 +0.3 1.4 hypothetical protein compare
PP_1844 +0.3 2.0 1-acyl-sn-glycerol-3-phosphate acyltransferase compare
PP_2883 +0.3 1.0 conserved protein of unknown function compare


Specific Phenotypes

None in this experiment

For Pseudomonas putida KT2440 in soil experiments

For soil Soil=PNNL_Prosser_PlotA_B_20191220; Sterility=sterile; Collection=outgrowth_in_LB_2hrs_then_extra_outgrowth_in_LB; SoilTreatment=coldshock; SoilTreatmentTime=72_hrs across organisms