Experiment set23IT047 for Pseudomonas putida KT2440

Compare to:

Soil=PNNL_Prosser_PlotA_B_20191220; Sterility=nonsterile; Collection=outgrowth_in_LB; SoilTreatment=coldshock; SoilTreatmentTime=72_hrs

200 most detrimental genes:

  gene name fitness t score description  
PP_1656 +3.2 10.2 ATP:GTP 3'-pyrophosphotransferase compare
PP_1655 +3.1 6.8 23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD compare
PP_1650 +2.7 21.2 Sensor protein GacS compare
PP_4099 +2.5 16.0 two-componenent system BarA/UvrY - regulatory subunit compare
PP_0168 +1.7 16.4 putative surface adhesion protein compare
PP_0166 +1.7 13.4 HlyD family secretion protein compare
PP_0167 +1.7 15.3 Toxin secretion ATP-binding protein compare
PP_4519 +1.6 14.2 Agglutination protein compare
PP_0165 +1.6 13.1 GGDEF domain protein compare
PP_0672 +1.5 12.1 Sensory box protein compare
PP_4373 +1.5 12.3 Transcriptional regulator FleQ compare
PP_0855 +1.3 3.4 conserved protein of unknown function compare
PP_4271 +1.1 1.8 conserved protein of unknown function compare
PP_5654 +1.1 3.6 putative phosphotriesterase compare
PP_3726 +1.1 2.5 Enoyl-CoA hydratase/isomerase family protein compare
PP_0566 +1.0 1.6 translation-related factor compare
PP_3903 +1.0 2.6 conserved protein of unknown function compare
PP_3052 +1.0 1.9 conserved protein of unknown function compare
PP_4171 +1.0 8.1 conserved exported protein of unknown function compare
PP_1553 +0.9 2.1 conserved protein of unknown function compare
PP_4710 +0.9 5.7 tRNA pseudouridine 55 synthase compare
PP_4262 +0.9 1.9 Cytochrome oxidase maturation protein, cbb3-type compare
PP_5528 +0.9 1.9 conserved protein of unknown function compare
PP_2530 +0.9 3.0 conserved protein of unknown function compare
PP_0916 +0.8 3.3 Amino acid transporter LysE compare
PP_5717 +0.8 2.3 conserved protein of unknown function compare
PP_5311 +0.8 5.1 putative signal transduction protein compare
PP_0856 +0.8 1.0 conserved lipoprotein of unknown function compare
PP_0962 +0.8 3.0 toluene-tolerance protein compare
PP_1633 +0.8 2.1 conserved exported protein of unknown function compare
PP_0653 +0.8 1.5 conserved protein of unknown function compare
PP_0958 +0.8 3.9 phospholipid ABC transporter ATP-binding subunit compare
PP_3892 +0.8 1.5 conserved protein of unknown function compare
PP_5232 +0.8 2.4 conserved protein of unknown function compare
PP_5546 +0.7 0.8 conserved protein of unknown function compare
PP_3449 +0.7 1.5 conserved exported protein of unknown function compare
PP_0063 +0.7 2.9 putative Lipid A biosynthesis lauroyl acyltransferase compare
PP_5253 +0.7 2.1 Arylesterase compare
PP_1562 +0.7 2.0 putative Phage terminase, small subunit compare
PP_5735 +0.7 2.6 conserved hypothetical protein compare
PP_5255 +0.7 2.4 putative hydrolase compare
PP_2087 +0.7 1.6 CmpX protein compare
PP_0593 +0.7 1.1 putative ribosome-binding factor compare
PP_2747 +0.7 1.6 conserved protein of unknown function compare
PP_5571 +0.7 1.4 conserved protein of unknown function compare
PP_0961 +0.7 4.6 toluene tolerance protein compare
PP_2403 +0.7 1.6 Chemotaxis protein CheY compare
PP_0999 +0.7 2.5 carbamate kinase compare
PP_0022 +0.7 1.1 hypothetical protein compare
PP_0643 +0.7 2.3 protein of unknown function compare
PP_1293 +0.7 1.8 molybdopterin synthase small subunit compare
PP_2737 +0.7 0.9 Oxidoreductase, short-chain dehydrogenase/reductase family compare
PP_3285 +0.6 2.4 detoxifying thioesterase of the phenylacetate degradation pathway compare
PP_4999 +0.6 0.3 dihydroorotase-like protein compare
PP_5339 +0.6 2.0 transcriptional regulator, ornithine utilization compare
PP_5429 +0.6 2.2 protein of unknown function compare
PP_0794 +0.6 2.2 1-phosphofructokinase monomer compare
PP_5365 +0.6 4.3 putative fatty acid methyltransferase compare
PP_3098 +0.6 1.1 conserved protein of unknown function compare
PP_5619 +0.6 1.3 protein of unknown function compare
PP_2227 +0.6 2.6 putative Multicomponent potassium-proton antiporter, subunit E compare
PP_1214 +0.6 1.2 putative transcriptional regulatory protein compare
PP_3318 +0.6 1.5 conserved protein of unknown function compare
PP_0685 +0.6 2.0 conserved protein of unknown function compare
PP_5594 +0.6 1.2 conserved protein of unknown function compare
PP_0787 +0.6 1.3 quinolinate phosphoribosyltransferase (decarboxylating) monomer compare
PP_4799 +0.6 0.3 putative Muramoyltetrapeptide carboxypeptidase compare
PP_4246 +0.6 4.1 Periplasmic binding protein compare
PP_3365 +0.6 1.1 Acetolactate synthase compare
PP_4681 +0.6 2.7 conserved protein of unknown function compare
PP_1568 +0.6 1.0 conserved protein of unknown function compare
PP_5017 +0.6 0.9 Sec-independent protein translocase protein TatB compare
PP_0025 +0.6 1.1 hypothetical protein compare
PP_2826 +0.6 2.1 Transcriptional regulator MexT compare
PP_5566 +0.6 2.3 protein of unknown function compare
PP_3891 +0.6 2.3 conserved protein of unknown function compare
PP_1238 +0.6 2.5 putative Lipoprotein compare
PP_2416 +0.6 0.8 putative Iron ABC transporter, ATP-binding protein compare
PP_3685 +0.6 2.1 conserved protein of unknown function compare
PP_1102 +0.6 2.7 conserved protein of unknown function compare
PP_2409 +0.6 1.5 cobalt-zinc-cadmium resistance protein compare
PP_1489 +0.6 2.4 CheW domain protein compare
PP_1787 +0.6 1.6 conserved protein of unknown function compare
PP_5625 +0.6 2.7 conserved protein of unknown function compare
PP_3930 +0.6 1.5 conserved exported protein of unknown function compare
PP_4961 +0.6 1.5 putative Lipoprotein compare
PP_5047 +0.5 2.6 two-component system sensory histidine kinase/phosphatase GlnL/GlnG compare
PP_4387 +0.5 0.8 conserved exported protein of unknown function compare
PP_3241 +0.5 0.9 conserved exported protein of unknown function compare
PP_2889 +0.5 2.8 putative Transmembrane regulator PrtR compare
PP_0355 +0.5 2.3 Response regulator compare
PP_2088 +0.5 1.2 RNA polymerase sigma factor SigX compare
PP_2713 +0.5 2.8 DNA-binding response regulator compare
PP_4163 +0.5 2.4 conserved exported protein of unknown function compare
PP_3164 +0.5 2.3 1,6-dihydroxycyclohexa-2,4-diene-1-carboxylate dehydrogenase compare
PP_2592 +0.5 1.9 Ferric siderophore ABC transporter, ATP-binding protein compare
PP_5001 +0.5 1.3 protease HslVU, ATPase component compare
PP_1528 +0.5 0.8 conserved protein of unknown function compare
PP_4625 +0.5 1.7 anti-holin regulator of holin CidA compare
PP_4265 +0.5 0.3 DNA-binding transcriptional dual regulator compare
PP_0691 +0.5 0.3 Glutamate 5-kinase compare
PP_2046 +0.5 1.7 Transcriptional regulator, LysR family compare
PP_4502 +0.5 2.1 putative enzyme compare
PP_1000 +0.5 1.6 ornithine carbamoyltransferase, catabolic compare
PP_2231 +0.5 1.4 putative permease of the drug/metabolite transporter (DMT) superfamily compare
PP_5505 +0.5 1.2 conserved transmembrane protein of unknown function compare
PP_3117 +0.5 1.4 putative protein involved in error-prone processing of DNA lesions compare
PP_2677 +0.5 2.1 conserved exported protein of unknown function compare
PP_3551 +0.5 0.8 DNA-binding response regulator, LuxR family compare
PP_4584 +0.5 1.4 putative endonuclease compare
PP_2388 +0.5 1.8 Transporter, LysE family compare
PP_4217 +0.5 4.5 outer membrane ferripyoverdine receptor FpvA, TonB-dependent compare
PP_2880 +0.5 0.8 Transcriptional regulator, TetR family compare
PP_3344 +0.5 1.8 nickel ABC transporter permease subunit compare
PP_1654 +0.5 0.3 cysteine synthase B compare
PP_3523 +0.5 2.6 conserved protein of unknown function compare
PP_2226 +0.5 1.9 putative K(+)/H(+) antiporter subunit F compare
PP_2311 +0.5 1.9 Mg-dependent cytoplasmic DNase / RNase compare
PP_0923 +0.5 2.3 Acyltransferase compare
PP_5609 +0.5 1.2 conserved protein of unknown function compare
PP_3810 +0.5 0.8 conserved protein of unknown function compare
PP_1199 +0.5 2.5 toxin-antitoxin system, higB toxin like compare
PP_4329 +0.5 1.0 FlhB domain protein compare
PP_2711 +0.5 2.5 Oxidoreductase, short-chain dehydrogenase/reductase family compare
PP_0972 +0.5 1.9 UPF0213 protein PP_0972 compare
PP_5705 +0.5 1.6 protein of unknown function compare
PP_2499 +0.5 0.9 conserved protein of unknown function compare
PP_4166 +0.5 1.5 conserved protein of unknown function compare
PP_2025 +0.5 1.4 Exonuclease SbcD compare
PP_5161 +0.5 1.6 putative lysophospholipase compare
PP_1556 +0.5 1.5 conserved protein of unknown function compare
PP_0874 +0.5 1.4 conserved protein of unknown function compare
PP_5162 +0.5 1.6 conserved exported protein of unknown function compare
PP_4238 +0.5 1.3 conserved protein of unknown function compare
PP_4015 +0.5 1.6 HflD-like high frequency lysogenization protein compare
PP_0360 +0.5 1.8 Molybdate transport regulator compare
PP_t49 +0.5 2.5 tRNA-Met compare
PP_1235 +0.5 1.8 AhpC/TSA family protein compare
PP_1508 +0.5 1.6 conserved protein of unknown function compare
PP_0238 +0.5 2.5 alkanesulfonate monooxygenase compare
PP_5358 +0.5 2.0 conserved protein of unknown function compare
PP_0122 +0.5 1.0 conserved exported protein of unknown function compare
PP_2798 +0.5 2.4 putative Oxidoreductase compare
PP_3831 +0.5 2.6 conserved protein of unknown function compare
PP_4273 +0.5 0.7 Transcriptional regulator, MerR family compare
PP_4488 +0.5 2.0 conserved exported protein of unknown function compare
PP_2229 +0.5 1.5 putative K(+)/H(+) antiporter subunit C compare
PP_2269 +0.5 1.8 putative N-acetylmuramoyl-L-alanine amidase compare
PP_0152 +0.5 1.6 conserved exported protein of unknown function compare
PP_0236 +0.5 1.2 NAD(P)H-dependent FMN reductase subunit compare
PP_4288 +0.5 2.2 ureidoglycolate lyase compare
PP_4280 +0.5 2.1 xanthine dehydrogenase accessory factor compare
PP_4814 +0.5 1.0 ATP-dependent protease La domain protein compare
PP_2681 +0.5 1.2 coenzyme PQQ synthesis protein D compare
PP_3532 +0.5 1.3 Transcriptional regulator, AsnC family compare
PP_3469 +0.5 2.0 conserved protein of unknown function compare
PP_1663 +0.5 2.3 conserved exported protein of unknown function compare
PP_5391 +0.5 2.4 conserved hypothetical protein compare
PP_0834 +0.4 1.4 Sec translocation complex subunit YajC compare
PP_0182 +0.4 1.3 conserved protein of unknown function compare
PP_5048 +0.4 2.4 two-component system DNA-binding transcriptional dual regulator GlnL/GlnG compare
PP_2060 +0.4 1.2 DNA-binding transcriptional dual regulator - SoxR-reversible one-electron oxidation of its [2Fe-2S] cluster, NADPH-dependent compare
PP_4464 +0.4 1.7 Transcriptional regulator, LysR family compare
PP_4982 +0.4 2.0 putative cytochrome b561, iron-regulated compare
PP_0938 +0.4 2.6 conserved protein of unknown function compare
PP_5445 +0.4 0.8 conserved protein of unknown function compare
PP_4409 +0.4 1.5 Site-specific recombinase, phage integrase family compare
PP_2208 +0.4 2.1 phosphonoacetaldehyde hydrolase compare
PP_4094 +0.4 0.9 conserved protein of unknown function compare
PP_4919 +0.4 1.9 ADP-ribose/sugar pyrophosphatase compare
PP_2189 +0.4 1.7 conserved protein of unknown function compare
PP_5381 +0.4 1.2 hypothetical protein compare
PP_2054 +0.4 1.4 putative DNA-binding transcriptional regulator compare
PP_1941 +0.4 1.8 conserved protein of unknown function compare
PP_2070 +0.4 0.8 Transcriptional regulator, AraC family compare
PP_0301 +0.4 2.2 betainyl-CoA thiolase compare
PP_2396 +0.4 1.9 conserved exported protein of unknown function compare
PP_4520 +0.4 2.1 conserved protein of unknown function compare
PP_4196 +0.4 1.4 conserved exported protein of unknown function compare
PP_5039 +0.4 0.7 conserved protein of unknown function compare
PP_1147 +0.4 1.1 conserved protein of unknown function compare
PP_0188 +0.4 2.1 putative Uroporphyrin-III C-methyltransferase compare
PP_3156 +0.4 1.9 Universal stress protein family compare
PP_5480 +0.4 1.7 conserved exported protein of unknown function compare
PP_5487 +0.4 1.3 conserved protein of unknown function compare
PP_2795 +0.4 1.4 AMP-binding domain protein compare
PP_3135 +0.4 2.0 putative Glycosyl transferase compare
PP_0725 +0.4 1.6 conserved hypothetical TPR repeat protein compare
PP_4925 +0.4 1.5 conserved protein of unknown function compare
PP_3003 +0.4 1.0 3-dehydroquinate dehydratase 3, type II compare
PP_0960 +0.4 1.4 phospholipid ABC transporter binding protein compare
PP_3899 +0.4 1.2 conserved protein of unknown function, hicB family compare
PP_1516 +0.4 2.1 RND membrane fusion protein compare
PP_0109 +0.4 1.7 conserved membrane protein of unknown function compare
PP_3707 +0.4 1.6 conserved protein of unknown function compare
PP_0963 +0.4 0.9 putative BolA family protein compare
PP_0761 +0.4 1.9 Ribosomal RNA small subunit methyltransferase C compare
PP_5554 +0.4 1.6 protein of unknown function compare
PP_1742 +0.4 1.0 conserved inner membrane protein of unknown function compare
PP_5680 +0.4 2.0 putative Cro/CI family transcriptional regulator compare


Specific Phenotypes

For 1 genes in this experiment

For soil Soil=PNNL_Prosser_PlotA_B_20191220; Sterility=nonsterile; Collection=outgrowth_in_LB; SoilTreatment=coldshock; SoilTreatmentTime=72_hrs in Pseudomonas putida KT2440

For soil Soil=PNNL_Prosser_PlotA_B_20191220; Sterility=nonsterile; Collection=outgrowth_in_LB; SoilTreatment=coldshock; SoilTreatmentTime=72_hrs across organisms