Experiment set23IT045 for Pseudomonas putida KT2440

Compare to:

Soil=PNNL_Prosser_PlotA_B_20191220; Sterility=sterile; Collection=outgrowth_in_LB; SoilTreatment=coldshock; SoilTreatmentTime=72_hrs

200 most important genes:

  gene name fitness t score description  
PP_0760 -6.5 -4.5 conserved membrane protein of unknown function compare
PP_1623 -6.1 -10.0 RNA polymerase, sigma S (sigma 38) factor compare
PP_0293 -5.3 -3.7 Imidazole glycerol phosphate synthase subunit HisF compare
PP_1898 -5.0 -3.5 MotA/TolQ/ExbB proton channel family protein compare
PP_1054 -4.5 -3.1 Type II secretion pathway protein XcpZ compare
PP_1198 -4.4 -4.3 transcriptional regulator, Cro/CI family (higA antitoxin like) compare
PP_4994 -4.2 -5.0 conserved protein of unknown function compare
PP_2903 -4.2 -3.3 peptidyl-prolyl cis-trans isomerase B (rotamase B) compare
PP_1729 -4.2 -2.6 conserved protein of unknown function compare
PP_4726 -4.1 -2.8 Chaperone protein DnaJ compare
PP_1215 -4.1 -2.8 Crossover junction endodeoxyribonuclease RuvC compare
PP_1763 -4.1 -2.8 putative oxidoreductase compare
PP_4058 -4.0 -8.2 1,4-alpha-glucan branching enzyme compare
PP_1986 -4.0 -3.9 3-isopropylmalate dehydratase small subunit compare
PP_4890 -3.9 -5.4 ATP phosphoribosyltransferase regulatory subunit compare
PP_5289 -3.8 -3.7 Acetylglutamate kinase compare
PP_1088 -3.8 -7.3 Argininosuccinate synthase compare
PP_4532 -3.8 -3.6 ATP-dependent DEAD-box RNA helicase require for 50S ribosomal subunit biogenesis compare
PP_0164 -3.8 -6.3 conserved protein of unknown function compare
PP_0290 -3.7 -6.6 Imidazole glycerol phosphate synthase subunit HisH compare
PP_0966 -3.7 -10.0 Histidinol dehydrogenase compare
PP_5185 -3.6 -4.3 acetylglutamate kinase-like protein (regulatory domain)/amino acid N-acetyltransferase compare
PP_0967 -3.6 -9.8 histidinol-phosphate aminotransferase (EC 2.6.1.9) (from data) compare
PP_1099 -3.5 -3.2 Cold shock protein CapB compare
PP_0292 -3.5 -4.1 1-(5-phosphoribosyl)-5-((5-phosphoribosylamino)methylideneamino)imidazole-4-carboxamide isomerase (EC 5.3.1.16) (from data) compare
PP_4902 -3.4 -3.3 Oligoribonuclease compare
PP_1237 -3.3 -2.3 4-hydroxy-tetrahydrodipicolinate synthase compare
PP_5217 -3.3 -10.9 Polyphosphate kinase compare
PP_1328 -3.2 -2.9 Protein MraZ compare
PP_0184 -3.2 -3.1 Argininosuccinate lyase compare
PP_3484 -3.1 -4.0 Response regulator receiver protein compare
PP_5014 -3.1 -3.7 Phosphoribosyl-AMP cyclohydrolase compare
PP_4008 -3.1 -7.2 ATP-dependent serine protease compare
PP_2214 -3.1 -4.2 3-hydroxyacyl-CoA dehydrogenase type-2 compare
PP_3649 -3.0 -5.3 Transcriptional regulator, GntR family compare
PP_1428 -3.0 -2.0 Sigma factor AlgU negative regulatory protein compare
PP_2145 -2.9 -2.8 beta-N-acetylglucosaminidase compare
PP_1779 -2.8 -7.1 Lipopolysaccharide ABC export system, ATP-binding protein compare
PP_4910 -2.8 -2.8 conserved protein of unknown function compare
PP_1778 -2.8 -5.1 Lipopolysaccharide ABC export system, permease protein compare
PP_0289 -2.8 -7.1 Imidazoleglycerol-phosphate dehydratase compare
PP_1216 -2.8 -2.9 Holliday junction ATP-dependent DNA helicase RuvA compare
PP_4263 -2.7 -3.7 putative membrane-bounded cytochrome biogenesis cycZ-like domain, copper tolerance protein compare
PP_1985 -2.7 -4.9 3-isopropylmalate dehydratase large subunit compare
PP_5008 -2.6 -1.8 Poly granule-associated protein compare
PP_5328 -2.6 -1.8 putative phosphate transport system permease protein compare
PP_1734 -2.6 -1.8 Probable septum site-determining protein MinC compare
PP_4122 -2.6 -1.8 proton-pumping NADH:ubiquinone oxidoreductase, respiratory complex I, subunit E compare
PP_2144 -2.5 -3.9 Transcriptional regulator, TetR family compare
PP_4880 -2.5 -7.0 exoribonuclease R compare
PP_0965 -2.5 -6.0 ATP phosphoribosyltransferase (EC 2.4.2.17) (from data) compare
PP_4342 -2.4 -3.7 flagellar synthesis regulator, putative ATPase compare
PP_1224 -2.4 -4.9 periplasmic subunit of the TolQRA transport system compare
PP_4337 -2.4 -5.6 chemotaxis response regulator protein-glutamate methylesterase of group 1 operon compare
PP_4936 -2.4 -7.6 O-antigen polymerase compare
PP_0001 -2.4 -2.0 probable chromosome-partitioning protein compare
PP_4004 -2.4 -3.6 DNA translocase FtsK compare
PP_1217 -2.4 -4.2 Holliday junction ATP-dependent DNA helicase RuvB compare
PP_5015 -2.3 -3.6 phosphoribosyl-ATP pyrophosphatase (EC 3.6.1.31) (from data) compare
PP_4367 -2.3 -4.0 Flagellar assembly protein FliH compare
PP_4130 -2.3 -2.7 NADH:ubiquinone oxidoreductase, membrane subunit M compare
PP_3511 -2.3 -6.1 Branched-chain-amino-acid aminotransferase compare
PP_5093 -2.2 -1.9 twitching motility protein compare
PP_0775 -2.2 -2.3 conserved protein of unknown function compare
PP_1764 -2.2 -3.0 Phosphoglycolate phosphatase 2 compare
PP_4375 -2.2 -6.4 flagellar chaperone, inhibits premature FliC assembly compare
PP_4964 -2.2 -1.5 D-erythrose 4-phosphate dehydrogenase compare
PP_2370 -2.2 -2.3 conserved protein of unknown function compare
PP_3821 -2.2 -8.2 UTP-glucose-1-phosphate uridylyltransferase compare
PP_0547 -2.1 -4.0 UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl- meso-diaminopimelate ligase compare
PP_1055 -2.1 -1.2 Type II secretion pathway protein GspN compare
PP_4343 -2.1 -4.2 Flagellar biosynthesis protein FlhF compare
PP_0127 -2.1 -4.1 Thiol:disulfide interchange protein compare
PP_0949 -2.1 -4.7 putative ATP-binding protein UPF0042 compare
PP_5051 -2.1 -2.0 conserved protein of unknown function compare
PP_3198 -2.1 -2.2 Ferredoxin, 2Fe-2S compare
PP_4909 -2.1 -4.6 phosphoserine phosphatase compare
PP_2378 -2.0 -2.0 Fe/S biogenesis protein NfuA compare
PP_4370 -2.0 -2.6 Flagellar hook-basal body complex protein FliE compare
PP_0435 -2.0 -7.3 Peptidase, M23/M37 family compare
PP_0003 -2.0 -3.2 16S RNA methyltransferase compare
PP_2862 -2.0 -5.3 Undecaprenyl-diphosphatase compare
PP_0401 -2.0 -3.0 Ribosomal RNA small subunit methyltransferase A compare
PP_4993 -2.0 -4.3 Glutathione synthetase compare
PP_5114 -2.0 -2.4 putative adenine methyltransferase compare
PP_1733 -2.0 -2.4 membrane ATPase of the MinC-MinD-MinE system compare
PP_4098 -2.0 -2.3 UvrABC system protein C compare
PP_4261 -2.0 -4.2 cation-transporting P-type ATPase compare
PP_4696 -2.0 -3.5 Nitrogen regulation protein NR(I) compare
PP_3833 -2.0 -3.3 Response regulator compare
PP_4944 -2.0 -4.2 Carbamoyltransferase compare
PP_1362 -2.0 -3.1 pyruvate kinase II compare
PP_4848 -2.0 -2.2 Curved DNA-binding protein compare
PP_4120 -2.0 -1.3 NADH-quinone oxidoreductase subunit B compare
PP_5084 -1.9 -7.6 penicillin-insensitive transglycosylase/penicillin-sensitive transpeptidase compare
PP_0291 -1.9 -3.1 conserved protein of unknown function compare
PP_5338 -1.9 -3.1 aspartate ammonia-lyase compare
PP_5143 -1.9 -3.1 conserved membrane protein of unknown function compare
PP_4355 -1.9 -1.4 flagellar export apparatus subunit compare
PP_1994 -1.9 -1.8 tRNA pseudouridine (38-40)synthase compare
PP_0951 -1.9 -5.1 Ribosome hibernation promoting factor compare
PP_4215 -1.9 -3.7 pyoverdine biosynthesis related protein compare
PP_1783 -1.9 -1.3 dTDP-glucose pyrophosphorylase compare
PP_5486 -1.8 -2.2 conserved protein of unknown function compare
PP_4296 -1.8 -1.3 conserved exported protein of unknown function compare
PP_5310 -1.8 -4.8 junction-specific ATP-dependent DNA helicase compare
PP_3946 -1.8 -1.4 HTH-type transcriptional repressor NicR compare
PP_1317 -1.8 -4.0 Ubiquinol-cytochrome c reductase iron-sulfur subunit compare
PP_5128 -1.8 -5.6 Dihydroxy-acid dehydratase compare
PP_4131 -1.8 -3.0 NADH-quinone oxidoreductase subunit N compare
PP_4361 -1.8 -3.7 Flagellar hook-length control protein FliK compare
PP_4369 -1.8 -4.7 Flagellar M-ring protein compare
PP_5456 -1.8 -1.7 conserved protein of unknown function compare
PP_4129 -1.8 -2.1 NADH:ubiquinone oxidoreductase, membrane subunit L compare
PP_4942 -1.8 -2.1 conserved protein of unknown function compare
PP_5350 -1.8 -2.9 Transcriptional regulator, RpiR family compare
PP_5045 -1.8 -3.3 tRNA sulfurtransferase compare
PP_4940 -1.7 -6.6 Putative glycosyltransferase compare
PP_1001 -1.7 -2.3 arginine deiminase compare
PP_1988 -1.7 -4.6 3-isopropylmalate dehydrogenase compare
PP_4354 -1.7 -3.3 flagellar export apparatus subunit compare
PP_4379 -1.7 -3.1 Beta-ketoacyl-acyl-carrier-protein synthase I compare
PP_1528 -1.7 -1.2 conserved protein of unknown function compare
PP_5393 -1.7 -1.4 putative metal-binding chaperone compare
PP_0434 -1.7 -4.4 Anhydro-N-acetylmuramic acid kinase compare
PP_1824 -1.7 -1.9 Smr domain protein compare
PP_0872 -1.7 -5.2 Peptide chain release factor 3 compare
PP_5028 -1.7 -2.3 proline iminopeptidase compare
PP_2322 -1.7 -6.0 Major outer membrane lipoprotein compare
PP_3999 -1.7 -5.5 Uroporphyrinogen-III C-methyltransferase/Precorrin-2 dehydrogenase/Sirohydrochlorin ferrochelatase compare
PP_4785 -1.7 -3.6 conserved exported protein of unknown function compare
PP_1999 -1.7 -1.9 membrane protein required for colicin V production compare
PP_2737 -1.6 -1.7 Oxidoreductase, short-chain dehydrogenase/reductase family compare
PP_5155 -1.6 -3.0 D-3-phosphoglycerate dehydrogenase / alpha-ketoglutarate reductase compare
PP_4678 -1.6 -8.6 Ketol-acid reductoisomerase compare
PP_4386 -1.6 -3.8 flagellar basal-body rod protein FlgF compare
PP_4262 -1.6 -2.1 Cytochrome oxidase maturation protein, cbb3-type compare
PP_1906 -1.6 -2.4 ribosomal large subunit pseudouridine synthase C compare
PP_0406 -1.6 -2.1 Nucleotidyltransferase family protein compare
PP_4937 -1.6 -4.3 toluene tolerance protein compare
PP_4365 -1.6 -2.8 Flagellar protein FliJ compare
PP_4009 -1.5 -4.1 ATP-dependent Clp protease adapter protein ClpS compare
PP_4376 -1.5 -7.3 flagellar filament capping protein compare
PP_4546 -1.5 -3.1 ATP-dependent helicase HrpA compare
PP_2345 -1.5 -1.9 conserved exported protein of unknown function compare
PP_2337 -1.5 -1.8 aconitate isomerase compare
PP_0735 -1.5 -1.4 molybdopterin-synthase adenylyltransferase compare
PP_1074 -1.5 -1.7 DNA-binding transcriptional repressor - GlpR-glycerol-3-phosphate compare
PP_2429 -1.5 -1.9 putative Membrane protein compare
PP_2883 -1.5 -1.7 conserved protein of unknown function compare
PP_t13 -1.5 -2.0 tRNA-Lys compare
PP_4517 -1.5 -1.4 conserved protein of unknown function compare
PP_1025 -1.5 -7.0 2-isopropylmalate synthase compare
PP_0984 -1.5 -3.1 conserved membrane protein of unknown function compare
PP_1468 -1.5 -1.7 Tyrosine recombinase XerD compare
PP_4380 -1.5 -7.3 Flagellar hook-associated protein FlgL compare
PP_4396 -1.5 -3.2 conserved protein of unknown function compare
PP_1864 -1.4 -3.1 conserved protein of unknown function compare
PP_0396 -1.4 -7.8 conserved protein of unknown function compare
PP_1355 -1.4 -6.2 Muropeptide permease AmpG compare
PP_4388 -1.4 -7.1 Flagellar hook protein FlgE compare
PP_4680 -1.4 -6.7 acetohydroxybutanoate synthase / acetolactate synthase compare
PP_0125 -1.4 -2.8 putative cytochrome c-type protein compare
PP_4378 -1.4 -8.0 flagellin, filament structural protein compare
PP_5145 -1.4 -9.0 phosphoenolpyruvate-dependent regulator (with NPR and NTR proteins) compare
PP_4390 -1.4 -5.8 flagellar basal-body rod protein FlgC compare
PP_4121 -1.4 -2.9 NADH-quinone oxidoreductase subunit C/D compare
PP_0405 -1.4 -5.6 conserved protein of unknown function compare
PP_4382 -1.4 -4.7 Peptidoglycan hydrolase FlgJ compare
PP_4067 -1.4 -3.9 methylcrotonyl-CoA carboxylase biotin-containing subunit alpha compare
PP_4207 -1.4 -2.9 conserved protein of unknown function compare
PP_3333 -1.4 -1.7 conserved protein of unknown function compare
PP_4891 -1.4 -3.4 integral membrane ATP-dependent zinc metallopeptidase / HflK-HflC complex compare
PP_4697 -1.4 -1.9 poly(A) polymerase compare
PP_0513 -1.4 -1.4 DNA-binding transcriptional repressor NrdR-Zn2+-ATP/dATP compare
PP_0246 -1.4 -2.1 two-component system DNA-binding response transcriptional dual regulator compare
PP_1493 -1.4 -2.7 chemotaxis response regulator protein-glutamate methylesterase of group 3 operon compare
PP_4344 -1.4 -6.2 flagellar export pore protein compare
PP_4988 -1.3 -4.1 signal transduction histidine kinase CheA/CheY-like receiver compare
PP_0757 -1.3 -2.6 conserved protein of unknown function compare
PP_1466 -1.3 -3.2 Long-chain acyl-CoA thioester hydrolase family protein compare
PP_4124 -1.3 -2.4 NADH-quinone oxidoreductase subunit G compare
PP_4286 -1.3 -4.3 allantoinase compare
PP_4358 -1.3 -3.7 flagellar synthesis, switching and energizing component compare
PP_0978 -1.3 -2.6 conserved protein of unknown function compare
PP_2718 -1.3 -2.5 arsenic resistance transcriptional regulator compare
PP_1079 -1.3 -3.2 Ornithine carbamoyltransferase compare
PP_0995 -1.3 -3.6 conserved membrane protein of unknown function compare
PP_2280 -1.3 -1.7 conserved protein of unknown function compare
PP_5329 -1.3 -1.2 putative phosphate ABC transporter, periplasmic phosphate-binding protein compare
PP_1325 -1.3 -3.5 putative lipoprotein compare
PP_0065 -1.3 -2.3 NAD-binding component of TrK potassium transporter compare
PP_1142 -1.3 -1.1 conserved protein of unknown function compare
PP_0397 -1.3 -7.1 protein kinase compare
PP_0395 -1.3 -6.4 putative type IV piliation protein compare
PP_0663 -1.3 -2.2 Transcriptional regulator, AsnC family compare
PP_4679 -1.3 -4.2 acetohydroxybutanoate synthase / acetolactate synthase compare
PP_4065 -1.3 -5.0 methylcrotonyl-CoA carboxylase biotin-containing subunit beta compare
PP_3110 -1.3 -1.4 protein of unknown function compare
PP_4905 -1.2 -3.5 Flagellar motor rotation protein compare


Specific Phenotypes

None in this experiment

For Pseudomonas putida KT2440 in soil experiments

For soil Soil=PNNL_Prosser_PlotA_B_20191220; Sterility=sterile; Collection=outgrowth_in_LB; SoilTreatment=coldshock; SoilTreatmentTime=72_hrs across organisms