Experiment set23IT043 for Pseudomonas putida KT2440

Compare to:

Soil=PNNL_Prosser_PlotA_B_20191220; Sterility=sterile; Collection=outgrowth_in_LB; SoilTreatment=coldshock; SoilTreatmentTime=72_hrs

200 most important genes:

  gene name fitness t score description  
PP_0760 -7.0 -4.8 conserved membrane protein of unknown function compare
PP_1623 -6.4 -10.0 RNA polymerase, sigma S (sigma 38) factor compare
PP_0292 -5.6 -3.9 1-(5-phosphoribosyl)-5-((5-phosphoribosylamino)methylideneamino)imidazole-4-carboxamide isomerase (EC 5.3.1.16) (from data) compare
PP_0164 -5.1 -3.5 conserved protein of unknown function compare
PP_4058 -4.8 -8.0 1,4-alpha-glucan branching enzyme compare
PP_1898 -4.6 -4.4 MotA/TolQ/ExbB proton channel family protein compare
PP_4726 -4.5 -3.1 Chaperone protein DnaJ compare
PP_3312 -4.3 -2.7 putative Heat shock protein compare
PP_1088 -4.3 -8.2 Argininosuccinate synthase compare
PP_5289 -4.2 -4.1 Acetylglutamate kinase compare
PP_5185 -4.1 -4.9 acetylglutamate kinase-like protein (regulatory domain)/amino acid N-acetyltransferase compare
PP_0293 -4.0 -3.2 Imidazole glycerol phosphate synthase subunit HisF compare
PP_4902 -3.9 -3.8 Oligoribonuclease compare
PP_4364 -3.8 -3.5 putative Anti-sigma F factor antagonist compare
PP_4994 -3.8 -5.4 conserved protein of unknown function compare
PP_4943 -3.7 -2.5 putative Glycosyl transferase compare
PP_0290 -3.6 -7.7 Imidazole glycerol phosphate synthase subunit HisH compare
PP_0184 -3.5 -4.1 Argininosuccinate lyase compare
PP_1779 -3.5 -8.0 Lipopolysaccharide ABC export system, ATP-binding protein compare
PP_1428 -3.3 -2.3 Sigma factor AlgU negative regulatory protein compare
PP_0966 -3.3 -9.0 Histidinol dehydrogenase compare
PP_2370 -3.3 -4.2 conserved protein of unknown function compare
PP_5217 -3.3 -15.1 Polyphosphate kinase compare
PP_1778 -3.2 -7.3 Lipopolysaccharide ABC export system, permease protein compare
PP_5014 -3.2 -4.4 Phosphoribosyl-AMP cyclohydrolase compare
PP_0967 -3.2 -10.0 histidinol-phosphate aminotransferase (EC 2.6.1.9) (from data) compare
PP_4342 -3.2 -4.8 flagellar synthesis regulator, putative ATPase compare
PP_3821 -3.1 -9.3 UTP-glucose-1-phosphate uridylyltransferase compare
PP_4385 -3.1 -3.8 flagellar basal-body rod protein FlgG compare
PP_0289 -3.1 -5.3 Imidazoleglycerol-phosphate dehydratase compare
PP_3484 -2.9 -3.9 Response regulator receiver protein compare
PP_2144 -2.9 -4.9 Transcriptional regulator, TetR family compare
PP_4122 -2.9 -2.0 proton-pumping NADH:ubiquinone oxidoreductase, respiratory complex I, subunit E compare
PP_4356 -2.9 -3.8 Flagellar protein FliO compare
PP_1079 -2.8 -4.1 Ornithine carbamoyltransferase compare
PP_4890 -2.8 -4.7 ATP phosphoribosyltransferase regulatory subunit compare
PP_1198 -2.8 -3.5 transcriptional regulator, Cro/CI family (higA antitoxin like) compare
PP_4008 -2.7 -8.0 ATP-dependent serine protease compare
PP_1986 -2.7 -3.4 3-isopropylmalate dehydratase small subunit compare
PP_5114 -2.7 -2.3 putative adenine methyltransferase compare
PP_4880 -2.7 -9.1 exoribonuclease R compare
PP_0965 -2.7 -9.7 ATP phosphoribosyltransferase (EC 2.4.2.17) (from data) compare
PP_1734 -2.6 -2.6 Probable septum site-determining protein MinC compare
PP_4098 -2.6 -2.4 UvrABC system protein C compare
PP_1216 -2.6 -3.1 Holliday junction ATP-dependent DNA helicase RuvA compare
PP_4940 -2.6 -9.0 Putative glycosyltransferase compare
PP_4917 -2.6 -5.2 3',5'-cyclic-nucleotide phosphodiesterase compare
PP_4380 -2.6 -11.3 Flagellar hook-associated protein FlgL compare
PP_4375 -2.5 -8.1 flagellar chaperone, inhibits premature FliC assembly compare
PP_4874 -2.5 -1.7 50S ribosomal protein L9 compare
PP_4936 -2.5 -7.7 O-antigen polymerase compare
PP_1985 -2.5 -4.7 3-isopropylmalate dehydratase large subunit compare
PP_4358 -2.5 -4.5 flagellar synthesis, switching and energizing component compare
PP_1493 -2.5 -3.3 chemotaxis response regulator protein-glutamate methylesterase of group 3 operon compare
PP_4944 -2.5 -4.7 Carbamoyltransferase compare
PP_4341 -2.4 -8.9 RNA polymerase sigma 28 (sigma F) factor for class III flagellar operons compare
PP_0832 -2.4 -4.0 S-adenosylmethionine:tRNA ribosyltransferase-isomerase compare
PP_4337 -2.4 -6.3 chemotaxis response regulator protein-glutamate methylesterase of group 1 operon compare
PP_3649 -2.4 -5.0 Transcriptional regulator, GntR family compare
PP_1826 -2.3 -2.7 Hydrolase, isochorismatase family compare
PP_5230 -2.3 -3.9 Tyrosine recombinase XerC compare
PP_1237 -2.3 -2.2 4-hydroxy-tetrahydrodipicolinate synthase compare
PP_4129 -2.3 -2.2 NADH:ubiquinone oxidoreductase, membrane subunit L compare
PP_4384 -2.3 -7.3 Flagellar L-ring protein compare
PP_4546 -2.3 -3.5 ATP-dependent helicase HrpA compare
PP_4368 -2.3 -5.7 flagellar motor switch protein compare
PP_4382 -2.2 -6.5 Peptidoglycan hydrolase FlgJ compare
PP_4004 -2.2 -4.1 DNA translocase FtsK compare
PP_4679 -2.2 -5.3 acetohydroxybutanoate synthase / acetolactate synthase compare
PP_4136 -2.2 -1.9 Transcriptional regulator, LuxR family compare
PP_2862 -2.2 -6.6 Undecaprenyl-diphosphatase compare
PP_2378 -2.2 -2.5 Fe/S biogenesis protein NfuA compare
PP_2217 -2.2 -3.1 enoyl-CoA hydratase compare
PP_1224 -2.1 -7.2 periplasmic subunit of the TolQRA transport system compare
PP_4367 -2.1 -5.1 Flagellar assembly protein FliH compare
PP_4366 -2.1 -8.5 flagellum-specific ATP synthase compare
PP_2371 -2.1 -5.3 Sulphite reductase hemoprotein, beta subunit compare
PP_0914 -2.1 -8.4 GGDEF domain protein compare
PP_1988 -2.1 -6.2 3-isopropylmalate dehydrogenase compare
PP_3511 -2.1 -5.6 Branched-chain-amino-acid aminotransferase compare
PP_0435 -2.1 -7.1 Peptidase, M23/M37 family compare
PP_5015 -2.0 -4.3 phosphoribosyl-ATP pyrophosphatase (EC 3.6.1.31) (from data) compare
PP_4381 -2.0 -8.4 Flagellar hook-associated protein FlgK compare
PP_4388 -2.0 -11.3 Flagellar hook protein FlgE compare
PP_4124 -2.0 -2.7 NADH-quinone oxidoreductase subunit G compare
PP_4378 -2.0 -11.6 flagellin, filament structural protein compare
PP_4938 -2.0 -7.6 putative Glycosyl transferase compare
PP_5090 -1.9 -2.1 putative cell division protein compare
PP_2302 -1.9 -4.6 DNA-binding, ATP-dependent protease compare
PP_4678 -1.9 -9.8 Ketol-acid reductoisomerase compare
PP_5027 -1.9 -2.5 D-tyrosyl-tRNA(Tyr) deacylase compare
PP_4361 -1.9 -7.5 Flagellar hook-length control protein FliK compare
PP_4120 -1.9 -1.8 NADH-quinone oxidoreductase subunit B compare
PP_4131 -1.9 -3.8 NADH-quinone oxidoreductase subunit N compare
PP_0547 -1.9 -4.4 UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl- meso-diaminopimelate ligase compare
PP_4891 -1.9 -4.7 integral membrane ATP-dependent zinc metallopeptidase / HflK-HflC complex compare
PP_0406 -1.9 -2.6 Nucleotidyltransferase family protein compare
PP_4353 -1.9 -6.3 Flagellar biosynthetic protein fliR compare
PP_5051 -1.9 -2.5 conserved protein of unknown function compare
PP_0949 -1.9 -4.5 putative ATP-binding protein UPF0042 compare
PP_4942 -1.9 -2.8 conserved protein of unknown function compare
PP_0872 -1.8 -5.5 Peptide chain release factor 3 compare
PP_5128 -1.8 -6.1 Dihydroxy-acid dehydratase compare
PP_5748 -1.8 -2.1 cytochrome c heme lyase subunit compare
PP_4909 -1.8 -5.5 phosphoserine phosphatase compare
PP_4680 -1.8 -9.7 acetohydroxybutanoate synthase / acetolactate synthase compare
PP_1025 -1.8 -9.2 2-isopropylmalate synthase compare
PP_0951 -1.8 -5.8 Ribosome hibernation promoting factor compare
PP_4383 -1.8 -5.0 Flagellar P-ring protein compare
PP_2145 -1.8 -3.2 beta-N-acetylglucosaminidase compare
PP_4386 -1.8 -5.2 flagellar basal-body rod protein FlgF compare
PP_4396 -1.8 -3.8 conserved protein of unknown function compare
PP_4121 -1.8 -3.7 NADH-quinone oxidoreductase subunit C/D compare
PP_4369 -1.8 -7.1 Flagellar M-ring protein compare
PP_4696 -1.8 -3.8 Nitrogen regulation protein NR(I) compare
PP_0313 -1.8 -1.7 putative electron transfer flavoprotein beta subunit compare
PP_4344 -1.7 -7.5 flagellar export pore protein compare
PP_5045 -1.7 -3.8 tRNA sulfurtransferase compare
PP_4814 -1.7 -2.7 ATP-dependent protease La domain protein compare
PP_5328 -1.7 -2.0 putative phosphate transport system permease protein compare
PP_4376 -1.7 -7.7 flagellar filament capping protein compare
PP_4370 -1.7 -4.6 Flagellar hook-basal body complex protein FliE compare
PP_3999 -1.7 -6.1 Uroporphyrinogen-III C-methyltransferase/Precorrin-2 dehydrogenase/Sirohydrochlorin ferrochelatase compare
PP_1783 -1.7 -1.6 dTDP-glucose pyrophosphorylase compare
PP_4391 -1.7 -7.1 flagellar basal-body rod protein FlgB compare
PP_4365 -1.7 -3.4 Flagellar protein FliJ compare
PP_1733 -1.6 -2.7 membrane ATPase of the MinC-MinD-MinE system compare
PP_4941 -1.6 -5.5 conserved exported protein of unknown function compare
PP_3434 -1.6 -2.3 conserved protein of unknown function compare
PP_0984 -1.6 -4.0 conserved membrane protein of unknown function compare
PP_4394 -1.6 -4.9 flagella basal body P-ring formation protein compare
PP_1217 -1.6 -3.7 Holliday junction ATP-dependent DNA helicase RuvB compare
PP_4130 -1.6 -4.0 NADH:ubiquinone oxidoreductase, membrane subunit M compare
PP_2030 -1.6 -3.5 conserved protein of unknown function compare
PP_0127 -1.6 -3.6 Thiol:disulfide interchange protein compare
PP_4352 -1.6 -7.1 flagellin export apparatus, substrate specificity protein compare
PP_2907 -1.6 -2.7 DNA-binding response regulator compare
PP_0274 -1.6 -1.8 putative transcriptional regulator containing HTH domain compare
PP_0846 -1.6 -1.3 DnaK-like molecular chaperone specific for IscU compare
PP_1142 -1.6 -1.5 conserved protein of unknown function compare
PP_4354 -1.6 -2.8 flagellar export apparatus subunit compare
PP_4904 -1.5 -6.8 Flagellar motor rotation protein compare
PP_4355 -1.5 -1.8 flagellar export apparatus subunit compare
PP_5350 -1.5 -2.7 Transcriptional regulator, RpiR family compare
PP_1317 -1.5 -3.1 Ubiquinol-cytochrome c reductase iron-sulfur subunit compare
PP_2976 -1.5 -2.4 putative transposase compare
PP_3614 -1.5 -3.0 conserved membrane protein of unknown function compare
PP_4065 -1.5 -5.2 methylcrotonyl-CoA carboxylase biotin-containing subunit beta compare
PP_0368 -1.5 -9.8 putative Acyl-CoA dehydrogenase compare
PP_4204 -1.5 -3.6 antitoxin of the type II toxin-antitoxin MqsRA system and DNA-binding transcriptional repressor compare
PP_4332 -1.5 -2.0 Chemotaxis protein CheW compare
PP_1864 -1.5 -3.7 conserved protein of unknown function compare
PP_4785 -1.5 -3.3 conserved exported protein of unknown function compare
PP_2214 -1.5 -2.9 3-hydroxyacyl-CoA dehydrogenase type-2 compare
PP_4362 -1.4 -2.3 conserved protein of unknown function compare
PP_4343 -1.4 -4.2 Flagellar biosynthesis protein FlhF compare
PP_1215 -1.4 -1.2 Crossover junction endodeoxyribonuclease RuvC compare
PP_4892 -1.4 -4.4 integral membrane ATP-dependent zinc metallopeptidase / HflK-HflC complex compare
PP_5327 -1.4 -2.1 putative phosphate ABC transporter, permease subunit compare
PP_4296 -1.4 -2.1 conserved exported protein of unknown function compare
PP_5329 -1.4 -1.9 putative phosphate ABC transporter, periplasmic phosphate-binding protein compare
PP_5502 -1.4 -4.6 ribosome modulation factor compare
PP_2337 -1.4 -1.9 aconitate isomerase compare
PP_5248 -1.4 -1.7 putative hydrolase compare
PP_4964 -1.4 -2.4 D-erythrose 4-phosphate dehydrogenase compare
PP_4804 -1.4 -1.0 RlpA-like lipoprotein compare
PP_5310 -1.4 -4.5 junction-specific ATP-dependent DNA helicase compare
PP_0291 -1.4 -1.9 conserved protein of unknown function compare
PP_2348 -1.4 -2.8 Sensor histidine kinase compare
PP_3833 -1.3 -3.2 Response regulator compare
PP_4340 -1.3 -2.2 response regulator for chemotactic signal transduction compare
PP_5145 -1.3 -9.7 phosphoenolpyruvate-dependent regulator (with NPR and NTR proteins) compare
PP_1906 -1.3 -3.3 ribosomal large subunit pseudouridine synthase C compare
PP_4215 -1.3 -3.7 pyoverdine biosynthesis related protein compare
PP_2390 -1.3 -4.4 Transcriptional regulator, LysR family compare
PP_4390 -1.3 -4.8 flagellar basal-body rod protein FlgC compare
PP_4471 -1.3 -3.7 Magnesium transporter compare
PP_2718 -1.3 -2.8 arsenic resistance transcriptional regulator compare
PP_5084 -1.3 -6.3 penicillin-insensitive transglycosylase/penicillin-sensitive transpeptidase compare
PP_0405 -1.3 -5.7 conserved protein of unknown function compare
PP_2280 -1.3 -1.2 conserved protein of unknown function compare
PP_1097 -1.3 -1.4 Methionine--tRNA ligase compare
PP_5095 -1.3 -0.8 pyrroline-5-carboxylate reductase compare
PP_0789 -1.3 -4.0 N-acetyl-anhydromuramyl-L-alanine-amidase compare
PP_4377 -1.3 -3.4 putative Flagellin FlaG compare
PP_5514 -1.3 -1.0 conserved protein of unknown function compare
PP_1366 -1.2 -1.3 Transcriptional regulator MvaT, P16 subunit compare
PP_4532 -1.2 -2.4 ATP-dependent DEAD-box RNA helicase require for 50S ribosomal subunit biogenesis compare
PP_4389 -1.2 -3.4 Flagellar basal-body rod modification protein FlgD compare
PP_t10 -1.2 -1.7 tRNA-Pro compare
PP_2327 -1.2 -3.5 transcriptional dual regulator / CysB-O-acetyl-L-serine compare
PP_4905 -1.2 -4.2 Flagellar motor rotation protein compare
PP_0022 -1.2 -1.0 hypothetical protein compare
PP_2889 -1.2 -5.6 putative Transmembrane regulator PrtR compare
PP_4126 -1.2 -1.1 NADH-quinone oxidoreductase subunit I compare
PP_4335 -1.2 -5.1 flagellar motor protein compare
PP_4359 -1.2 -3.5 Flagellar protein FliL compare
PP_1268 -1.2 -2.0 putative HtrA suppressor protein sohA compare
PP_0025 -1.1 -1.2 hypothetical protein compare
PP_1319 -1.1 -3.1 Ubiquinol--cytochrome c reductase, cytochrome c1 compare


Specific Phenotypes

For 4 genes in this experiment

For soil Soil=PNNL_Prosser_PlotA_B_20191220; Sterility=sterile; Collection=outgrowth_in_LB; SoilTreatment=coldshock; SoilTreatmentTime=72_hrs in Pseudomonas putida KT2440

For soil Soil=PNNL_Prosser_PlotA_B_20191220; Sterility=sterile; Collection=outgrowth_in_LB; SoilTreatment=coldshock; SoilTreatmentTime=72_hrs across organisms