Experiment set23IT043 for Pseudomonas putida KT2440

Compare to:

Soil=PNNL_Prosser_PlotA_B_20191220; Sterility=sterile; Collection=outgrowth_in_LB; SoilTreatment=coldshock; SoilTreatmentTime=72_hrs

200 most detrimental genes:

  gene name fitness t score description  
PP_1656 +1.8 9.1 ATP:GTP 3'-pyrophosphotransferase compare
PP_1655 +1.6 7.8 23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD compare
PP_5017 +1.6 3.2 Sec-independent protein translocase protein TatB compare
PP_2737 +1.5 1.7 Oxidoreductase, short-chain dehydrogenase/reductase family compare
PP_3762 +1.3 2.6 Response regulator compare
PP_t12 +1.2 2.0 tRNA-Thr compare
PP_1833 +1.1 4.2 conserved protein of unknown function compare
PP_5597 +1.1 1.4 conserved protein of unknown function compare
PP_0653 +1.1 2.0 conserved protein of unknown function compare
PP_1301 +1.0 4.7 quality control serine endoprotease DegS compare
PP_5528 +1.0 2.4 conserved protein of unknown function compare
PP_0133 +1.0 7.2 Alginate biosynthesis transcriptional regulatory protein AlgB compare
PP_1410 +1.0 1.8 conserved protein of unknown function compare
PP_3810 +0.9 2.8 conserved protein of unknown function compare
PP_4246 +0.9 6.9 Periplasmic binding protein compare
PP_1427 +0.9 5.6 RNA polymerase sigma E factor compare
PP_1650 +0.9 5.7 Sensor protein GacS compare
PP_0575 +0.9 2.4 conserved membrane protein of unknown function compare
PP_3328 +0.9 2.7 putative Ring-cleaving dioxygenase compare
PP_3971 +0.9 1.3 conserved protein of unknown function compare
PP_4247 +0.9 0.7 Exonuclease compare
PP_2356 +0.9 5.8 putative Phytochrome family protein compare
PP_0132 +0.9 4.5 Alginate biosynthesis sensor protein KinB compare
PP_4171 +0.9 6.8 conserved exported protein of unknown function compare
PP_1062 +0.9 2.0 MutT/nudix family protein compare
PP_2354 +0.8 5.6 Sensory box histidine kinase/response regulator compare
PP_1633 +0.8 2.9 conserved exported protein of unknown function compare
PP_4099 +0.8 4.5 two-componenent system BarA/UvrY - regulatory subunit compare
PP_3239 +0.8 2.6 putative cointegrate resolution protein T Tn4652 compare
PP_3318 +0.8 1.6 conserved protein of unknown function compare
PP_4424 +0.8 1.7 Uncharacterized HTH-type transcriptional regulator y4tD compare
PP_5735 +0.8 2.0 conserved hypothetical protein compare
PP_3346 +0.8 3.0 Nickel transporter ATP-binding protein compare
PP_4486 +0.8 5.1 lysine / arginine / ornithine ABC transporter - periplasmic binding protein compare
PP_5604 +0.8 1.7 putative subtilisin-like serine protease compare
PP_5654 +0.7 2.0 putative phosphotriesterase compare
PP_2592 +0.7 2.0 Ferric siderophore ABC transporter, ATP-binding protein compare
PP_3398 +0.7 2.4 putative Curli fiber surface-exposed nucleator CsgB compare
PP_1404 +0.7 2.3 conserved protein of unknown function compare
PP_3836 +0.7 3.9 conserved protein of unknown function compare
PP_3052 +0.7 1.2 conserved protein of unknown function compare
PP_2547 +0.7 3.0 Transcriptional regulator, LysR family compare
PP_5603 +0.7 2.6 putative FAD dependent oxidoreductase compare
PP_3247 +0.7 2.7 Transporter, bile acid/Na+ symporter family compare
PP_1269 +0.7 1.3 Universal stress protein family compare
PP_0556 +0.7 2.4 Acetoin catabolism protein compare
PP_5001 +0.7 2.0 protease HslVU, ATPase component compare
PP_4156 +0.7 2.2 Transcriptional regulator, LysR family compare
PP_4163 +0.7 2.6 conserved exported protein of unknown function compare
PP_2070 +0.7 0.7 Transcriptional regulator, AraC family compare
PP_4531 +0.7 3.3 conserved exported protein of unknown function compare
PP_2900 +0.7 1.4 conserved protein of unknown function compare
PP_4925 +0.7 1.5 conserved protein of unknown function compare
PP_0874 +0.7 1.4 conserved protein of unknown function compare
PP_1598 +0.7 3.4 regulatory intramembrane protein RIP zinc protease compare
PP_2514 +0.7 1.6 4-carboxy-4-hydroxy-2-oxoadipic acid aldolase compare
PP_2684 +0.7 2.0 conserved membrane protein of unknown function compare
PP_4631 +0.6 2.7 conserved protein of unknown function compare
PP_0593 +0.6 1.0 putative ribosome-binding factor compare
PP_0360 +0.6 2.7 Molybdate transport regulator compare
PP_5426 +0.6 3.0 conserved protein of unknown function compare
PP_2530 +0.6 2.1 conserved protein of unknown function compare
PP_3837 +0.6 2.6 inner membrane protein of unknown function compare
PP_5519 +0.6 1.4 conserved protein of unknown function of phage origin compare
PP_1951 +0.6 3.6 Oxidoreductase, short chain dehydrogenase/reductase family compare
PP_1164 +0.6 1.6 Transcriptional regulator, LysR family compare
PP_4464 +0.6 2.8 Transcriptional regulator, LysR family compare
PP_4961 +0.6 1.3 putative Lipoprotein compare
PP_5241 +0.6 1.1 DNA-binding response regulator, LuxR family compare
PP_1001 +0.6 1.4 arginine deiminase compare
PP_5705 +0.6 1.5 protein of unknown function compare
PP_4685 +0.6 3.2 conserved protein of unknown function compare
PP_2633 +0.6 1.1 conserved protein of unknown function compare
PP_3559 +0.6 1.3 glycine betaine ABC transporter (permease) compare
PP_4230 +0.6 3.1 conserved exported protein of unknown function compare
PP_5391 +0.6 2.6 conserved hypothetical protein compare
PP_0708 +0.6 3.4 putative Betaine-aldehyde dehydrogenase compare
PP_1344 +0.6 1.3 conserved protein of unknown function compare
PP_5552 +0.6 1.3 conserved protein of unknown function compare
PP_1568 +0.6 0.9 conserved protein of unknown function compare
PP_1770 +0.6 1.0 3-phosphoshikimate 1-carboxyvinyltransferase compare
PP_0859 +0.6 2.5 putative ketoglutaramate omega-amidase compare
PP_2000 +0.6 0.8 amidophosphoribosyl transferase compare
PP_2055 +0.5 2.1 putative isomerase compare
PP_2655 +0.5 1.9 conserved protein of unknown function compare
PP_1759 +0.5 2.6 conserved exported protein of unknown function compare
PP_1214 +0.5 1.4 putative transcriptional regulatory protein compare
PP_0921 +0.5 1.4 Transcriptional regulator, ArsR family compare
PP_4581 +0.5 1.8 putative amidotransferase compare
PP_4485 +0.5 3.4 histidine / lysine / arginine / ornithine ABC transporter - permease subunit compare
PP_2681 +0.5 1.4 coenzyme PQQ synthesis protein D compare
PP_4419 +0.5 1.2 transposase compare
PP_0656 +0.5 2.0 putative Amino acid ABC transporter, permease protein compare
PP_3825 +0.5 1.5 conserved protein of unknown function compare
PP_3527 +0.5 3.1 Transcriptional regulator, TetR family compare
PP_0340 +0.5 4.2 Glutamate-ammonia-ligase adenylyltransferase compare
PP_4109 +0.5 1.7 conserved protein of unknown function compare
PP_1190 +0.5 2.2 conserved protein of unknown function compare
PP_5247 +0.5 1.6 conserved protein of unknown function compare
PP_1207 +0.5 2.0 conserved protein of unknown function compare
PP_5188 +0.5 2.2 putative transcriptional regulator (AsnC/Lrp family) compare
PP_3298 +0.5 2.7 CinA domain protein compare
PP_4196 +0.5 1.7 conserved exported protein of unknown function compare
PP_3618 +0.5 1.8 conserved protein of unknown function compare
PP_4951 +0.5 2.4 Drug resistance transporter, EmrB/QacA family compare
PP_5066 +0.5 1.8 K(+)/H(+) antiporter NhaP2 compare
PP_2311 +0.5 1.8 Mg-dependent cytoplasmic DNase / RNase compare
PP_2826 +0.5 1.3 Transcriptional regulator MexT compare
PP_3761 +0.5 3.8 Sensor histidine kinase/response regulator compare
PP_5358 +0.5 2.3 conserved protein of unknown function compare
PP_0945 +0.5 1.8 conserved protein of unknown function compare
PP_3919 +0.5 2.1 conserved protein of unknown function compare
PP_5032 +0.5 2.7 Histidine ammonia-lyase compare
PP_4625 +0.5 2.2 anti-holin regulator of holin CidA compare
PP_4686 +0.5 2.7 putative lipoprotein compare
PP_0168 +0.5 4.3 putative surface adhesion protein compare
PP_4660 +0.5 2.1 Transcriptional regulator, LysR family compare
PP_2177 +0.5 2.1 putative transcriptional regulator compare
PP_1409 +0.5 2.4 ribosomal small subunit pseudouridine synthase A compare
PP_5644 +0.5 1.4 conserved membrane protein of unknown function compare
PP_2307 +0.5 0.5 conserved protein of unknown function compare
PP_5022 +0.5 1.0 Glutamine transport ATP-binding protein GlnQ compare
PP_1570 +0.5 1.4 Head-tail adaptor compare
PP_0166 +0.5 3.6 HlyD family secretion protein compare
PP_0167 +0.5 4.0 Toxin secretion ATP-binding protein compare
PP_4555 +0.5 0.9 conserved protein of unknown function compare
PP_5505 +0.5 1.1 conserved transmembrane protein of unknown function compare
PP_1543 +0.5 2.6 conserved protein of unknown function compare
PP_4751 +0.5 2.6 Amino acid ABC transporter, ATP-binding protein compare
PP_3230 +0.5 2.2 Phosphoribosyl transferase domain protein compare
PP_1167 +0.5 1.4 D-glucuronate / D-galacturonate TRAP transporter, large permease component (from data) compare
PP_5255 +0.5 1.4 putative hydrolase compare
PP_5428 +0.5 2.1 conserved exported protein of unknown function compare
PP_5293 +0.5 1.9 conserved protein of unknown function compare
PP_1147 +0.5 1.5 conserved protein of unknown function compare
PP_1071 +0.5 2.0 glutamate / aspartate ABC transporter - periplasmic binding protein compare
PP_4133 +0.5 1.1 Transcriptional regulator-related protein compare
PP_2196 +0.5 1.4 agmatinase compare
PP_4735 +0.5 2.8 L-lactate permease compare
PP_4100 +0.5 2.0 Transcriptional regulator, Cro/CI family compare
PP_0891 +0.4 2.2 conserved exported protein of unknown function compare
PP_5674 +0.4 1.2 conserved protein of unknown function compare
PP_3116 +0.4 1.2 transcriptional repressor compare
PP_2389 +0.4 2.0 conserved protein of unknown function compare
PP_5640 +0.4 1.7 conserved protein of unknown function compare
PP_2777 +0.4 1.4 putative Acyl carrier protein compare
PP_0298 +0.4 2.6 AraC-family transcriptional regulator compare
PP_5509 +0.4 2.0 conserved exported protein of unknown function compare
PP_2189 +0.4 1.2 conserved protein of unknown function compare
PP_2620 +0.4 2.5 conserved protein of unknown function compare
PP_0743 +0.4 2.5 conserved protein with NAD(P)-binding Rossmann-fold domain compare
PP_1489 +0.4 1.8 CheW domain protein compare
PP_3671 +0.4 2.2 Oxidoreductase, aldo/keto reductase family compare
PP_4519 +0.4 3.6 Agglutination protein compare
PP_2459 +0.4 0.5 ribose pyranase compare
PP_4568 +0.4 2.0 putative metabolite efflux pump compare
PP_3892 +0.4 0.8 conserved protein of unknown function compare
PP_1000 +0.4 1.4 ornithine carbamoyltransferase, catabolic compare
PP_3394 +0.4 2.5 putative 3-hydroxy-3-methylglutaryl-CoA lyase compare
PP_3517 +0.4 2.1 conserved exported protein of unknown function compare
PP_3455 +0.4 1.6 Multidrug efflux RND membrane fusion protein compare
PP_2925 +0.4 2.3 malate:quinone oxidoreductase compare
PP_1310 +0.4 0.9 conserved hypothetical protein compare
PP_2715 +0.4 1.1 ArsH protein compare
PP_2675 +0.4 0.9 Cytochrome c-type protein compare
PP_1299 +0.4 2.0 putative amino acid ABC transporter - membrane subunit compare
PP_5052 +0.4 1.4 tRNA(Leu) mC34,mU34 2'-O-ribose methyltransferase, AdoMet-dependent compare
PP_2276 +0.4 2.5 putative phage exonuclease compare
PP_5556 +0.4 1.4 putative bacteriophage lysis protein compare
PP_3167 +0.4 2.0 benzoate transport protein compare
PP_4957 +0.4 1.7 conserved protein of unknown function compare
PP_4217 +0.4 3.6 outer membrane ferripyoverdine receptor FpvA, TonB-dependent compare
PP_5272 +0.4 2.3 conserved protein of unknown function compare
PP_t64 +0.4 0.9 tRNA-Gly compare
PP_1687 +0.4 2.1 conserved exported protein of unknown function compare
PP_5651 +0.4 2.5 conserved protein of unknown function compare
PP_5739 +0.4 1.8 protein of unknown function compare
PP_3355 +0.4 2.1 Beta-ketothiolase compare
PP_2610 +0.4 1.6 conserved protein of unknown function compare
PP_4497 +0.4 1.9 conserved protein of unknown function compare
PP_3083 +0.4 1.8 putative Membrane protein compare
PP_4817 +0.4 1.0 MaoC domain protein compare
PP_1562 +0.4 0.6 putative Phage terminase, small subunit compare
PP_5339 +0.4 1.2 transcriptional regulator, ornithine utilization compare
PP_1210 +0.4 2.0 DNA-binding stress protein compare
PP_1706 +0.4 1.7 Nitrite reductase compare
PP_1255 +0.4 1.5 putative cis-4-hydroxy-D-proline oxidase compare
PP_1137 +0.4 2.2 high-affinity branched-chain amino acid transporter, ATP binding compare
PP_2784 +0.4 1.1 Oxidoreductase, short-chain dehydrogenase/reductase family compare
PP_1787 +0.4 1.0 conserved protein of unknown function compare
PP_4050 +0.4 3.3 glycogen synthase compare
PP_4569 +0.4 1.2 conserved protein of unknown function compare
PP_0244 +0.4 1.9 conserved protein of unknown function compare
PP_5625 +0.4 1.3 conserved protein of unknown function compare
PP_4288 +0.4 1.3 ureidoglycolate lyase compare
PP_0534 +0.4 1.8 putative Transcriptional regulator PfeR compare
PP_1289 +0.4 2.0 conserved protein of unknown function, DUF328 family compare
PP_3254 +0.4 1.6 putative Nucleosidase compare
PP_4451 +0.4 1.5 conserved protein of unknown function compare
PP_1011 +0.4 2.4 glucokinase compare


Specific Phenotypes

For 4 genes in this experiment

For soil Soil=PNNL_Prosser_PlotA_B_20191220; Sterility=sterile; Collection=outgrowth_in_LB; SoilTreatment=coldshock; SoilTreatmentTime=72_hrs in Pseudomonas putida KT2440

For soil Soil=PNNL_Prosser_PlotA_B_20191220; Sterility=sterile; Collection=outgrowth_in_LB; SoilTreatment=coldshock; SoilTreatmentTime=72_hrs across organisms