Experiment set23IT033 for Pseudomonas putida KT2440

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Soil=PNNL_Prosser_PlotA_B_20191220; Sterility=sterile; Collection=outgrowth_in_LB_2hrs_then_extra_outgrowth_in_LB; SoilTreatment=coldshock; SoilTreatmentTime=0_hrs

200 most important genes:

  gene name fitness t score description  
PP_4517 -5.9 -2.7 conserved protein of unknown function compare
PP_4263 -5.6 -3.8 putative membrane-bounded cytochrome biogenesis cycZ-like domain, copper tolerance protein compare
PP_0164 -5.5 -3.8 conserved protein of unknown function compare
PP_1215 -4.6 -1.8 Crossover junction endodeoxyribonuclease RuvC compare
PP_5610 -4.5 -1.5 protein of unknown function compare
PP_5289 -4.4 -4.6 Acetylglutamate kinase compare
PP_5475 -4.3 -1.4 conserved protein of unknown function compare
PP_2145 -4.0 -2.8 beta-N-acetylglucosaminidase compare
PP_1176 -3.7 -2.2 conserved protein of unknown function compare
PP_3946 -3.6 -1.2 HTH-type transcriptional repressor NicR compare
PP_0607 -3.6 -2.2 putative Type IV pili biogenesis protein FimT compare
PP_4902 -3.4 -3.3 Oligoribonuclease compare
PP_1366 -3.4 -1.1 Transcriptional regulator MvaT, P16 subunit compare
PP_2474 -3.3 -2.7 Glutathione S-transferase family protein compare
PP_5328 -3.3 -2.2 putative phosphate transport system permease protein compare
PP_0888 -3.1 -2.6 Photosynthetic apparatus regulatory protein RegA compare
PP_2640 -3.1 -2.9 Acetyltransferase, GNAT family compare
PP_4262 -2.9 -2.4 Cytochrome oxidase maturation protein, cbb3-type compare
PP_1734 -2.9 -2.0 Probable septum site-determining protein MinC compare
PP_0092 -2.8 -2.0 putative lipoprotein compare
PP_0846 -2.8 -1.1 DnaK-like molecular chaperone specific for IscU compare
PP_5185 -2.8 -4.9 acetylglutamate kinase-like protein (regulatory domain)/amino acid N-acetyltransferase compare
PP_5310 -2.8 -8.0 junction-specific ATP-dependent DNA helicase compare
PP_2378 -2.8 -1.9 Fe/S biogenesis protein NfuA compare
PP_5309 -2.8 -1.9 oxidative and nitrosative stress transcriptional dual regulator compare
PP_4874 -2.7 -1.2 50S ribosomal protein L9 compare
PP_2340 -2.7 -4.1 conserved protein of unknown function compare
PP_1629 -2.7 -6.6 Protein RecA compare
PP_1898 -2.6 -2.4 MotA/TolQ/ExbB proton channel family protein compare
PP_1493 -2.6 -3.6 chemotaxis response regulator protein-glutamate methylesterase of group 3 operon compare
PP_1994 -2.6 -1.8 tRNA pseudouridine (38-40)synthase compare
PP_1208 -2.6 -1.2 conserved protein of unknown function, SlyX family compare
PP_1764 -2.5 -3.4 Phosphoglycolate phosphatase 2 compare
PP_5483 -2.5 -1.6 conserved protein of unknown function compare
PP_3037 -2.4 -1.8 C4-type zinc finger protein, DksA/TraR family compare
PP_1468 -2.4 -1.8 Tyrosine recombinase XerD compare
PP_5327 -2.4 -1.6 putative phosphate ABC transporter, permease subunit compare
PP_1632 -2.4 -1.4 conserved protein of unknown function compare
PP_0184 -2.4 -5.1 Argininosuccinate lyase compare
PP_3365 -2.3 -1.2 Acetolactate synthase compare
PP_1001 -2.3 -3.5 arginine deiminase compare
PP_0218 -2.3 -6.9 Sensory box protein compare
PP_5338 -2.2 -3.6 aspartate ammonia-lyase compare
PP_4379 -2.2 -3.7 Beta-ketoacyl-acyl-carrier-protein synthase I compare
PP_0195 -2.2 -1.5 conserved protein of unknown function compare
PP_4993 -2.1 -3.8 Glutathione synthetase compare
PP_5114 -2.1 -1.9 putative adenine methyltransferase compare
PP_1328 -2.1 -1.1 Protein MraZ compare
PP_3808 -2.1 -1.7 Antibiotic synthesis protein MbtH compare
PP_5337 -2.0 -6.1 LysR family transcriptional regulator compare
PP_5279 -2.0 -2.6 conserved protein of unknown function compare
PP_0406 -2.0 -2.2 Nucleotidyltransferase family protein compare
PP_4828 -2.0 -0.9 Precorrin-8X methylmutase compare
PP_1088 -1.9 -5.6 Argininosuccinate synthase compare
PP_4941 -1.9 -4.7 conserved exported protein of unknown function compare
PP_2439 -1.9 -4.0 peroxiredoxin, alkylhydroperoxide reductase - small subunit compare
PP_0628 -1.9 -1.7 conserved protein of unknown function compare
PP_1702 -1.9 -2.6 Recombination-associated protein RdgC compare
PP_5329 -1.9 -1.3 putative phosphate ABC transporter, periplasmic phosphate-binding protein compare
PP_2794 -1.9 -1.4 Oxidoreductase, short chain dehydrogenase/reductase family compare
PP_1294 -1.8 -2.9 molybdopterin synthase large subunit compare
PP_0900 -1.8 -1.7 PAP2 family protein compare
PP_4532 -1.8 -1.5 ATP-dependent DEAD-box RNA helicase require for 50S ribosomal subunit biogenesis compare
PP_4943 -1.8 -1.3 putative Glycosyl transferase compare
PP_4004 -1.8 -2.3 DNA translocase FtsK compare
PP_4726 -1.8 -1.6 Chaperone protein DnaJ compare
PP_4997 -1.7 -1.1 pyrimidine operon regulatory protein/uracil phosphoribosyltransferase compare
PP_1318 -1.7 -3.5 Cytochrome b compare
PP_5748 -1.7 -1.4 cytochrome c heme lyase subunit compare
PP_1733 -1.7 -2.7 membrane ATPase of the MinC-MinD-MinE system compare
PP_3726 -1.7 -1.1 Enoyl-CoA hydratase/isomerase family protein compare
PP_4340 -1.7 -1.7 response regulator for chemotactic signal transduction compare
PP_2046 -1.7 -1.5 Transcriptional regulator, LysR family compare
PP_2510 -1.7 -1.1 conserved protein of unknown function compare
PP_1623 -1.7 -8.9 RNA polymerase, sigma S (sigma 38) factor compare
PP_1783 -1.7 -1.6 dTDP-glucose pyrophosphorylase compare
PP_4892 -1.7 -4.3 integral membrane ATP-dependent zinc metallopeptidase / HflK-HflC complex compare
PP_1999 -1.7 -1.0 membrane protein required for colicin V production compare
PP_0435 -1.7 -4.8 Peptidase, M23/M37 family compare
PP_2403 -1.6 -1.1 Chemotaxis protein CheY compare
PP_0957 -1.6 -1.7 D-arabinose 5-phosphate isomerase compare
PP_0001 -1.6 -1.3 probable chromosome-partitioning protein compare
PP_4129 -1.6 -2.9 NADH:ubiquinone oxidoreductase, membrane subunit L compare
PP_5241 -1.6 -1.6 DNA-binding response regulator, LuxR family compare
PP_5617 -1.6 -1.5 conserved protein of unknown function compare
PP_5198 -1.6 -2.2 conserved protein of unknown function compare
PP_1142 -1.6 -1.0 conserved protein of unknown function compare
PP_1217 -1.6 -2.9 Holliday junction ATP-dependent DNA helicase RuvB compare
PP_1122 -1.6 -1.4 OmpA family protein compare
PP_0962 -1.6 -1.2 toluene-tolerance protein compare
PP_1410 -1.5 -0.9 conserved protein of unknown function compare
PP_1480 -1.5 -2.6 conserved protein of unknown function compare
PP_4268 -1.5 -1.0 nucleoid-associated broad specificity regulator compare
PP_2253 -1.5 -1.0 Transcriptional regulator, GntR family compare
PP_0872 -1.5 -3.5 Peptide chain release factor 3 compare
PP_4213 -1.5 -1.8 putative dipeptidase compare
PP_3116 -1.5 -3.7 transcriptional repressor compare
PP_0025 -1.5 -1.0 hypothetical protein compare
PP_1987 -1.5 -1.6 Methlytransferase, UbiE/COQ5 family compare
PP_2337 -1.5 -2.0 aconitate isomerase compare
PP_0003 -1.5 -2.0 16S RNA methyltransferase compare
PP_5045 -1.4 -2.5 tRNA sulfurtransferase compare
PP_1000 -1.4 -3.2 ornithine carbamoyltransferase, catabolic compare
PP_4917 -1.4 -2.7 3',5'-cyclic-nucleotide phosphodiesterase compare
PP_2302 -1.4 -3.4 DNA-binding, ATP-dependent protease compare
PP_1178 -1.4 -0.8 conserved protein of unknown function compare
PP_4320 -1.4 -2.6 cytochrome c-type biogenesis protein compare
PP_2388 -1.4 -2.2 Transporter, LysE family compare
PP_0484 -1.4 -2.6 transporter of an unknown substrate compare
PP_2327 -1.4 -2.3 transcriptional dual regulator / CysB-O-acetyl-L-serine compare
PP_3637 -1.4 -1.1 putative Sulfonate ABC transporter, ATP-binding protein compare
PP_4699 -1.4 -2.5 3-methyl-2-oxobutanoate hydroxymethyltransferase compare
PP_2409 -1.4 -2.1 cobalt-zinc-cadmium resistance protein compare
PP_1164 -1.4 -1.3 Transcriptional regulator, LysR family compare
PP_2088 -1.4 -1.5 RNA polymerase sigma factor SigX compare
PP_5218 -1.4 -2.9 DedA family protein compare
PP_5095 -1.4 -0.6 pyrroline-5-carboxylate reductase compare
PP_4942 -1.4 -1.8 conserved protein of unknown function compare
PP_4936 -1.4 -5.2 O-antigen polymerase compare
PP_2581 -1.4 -1.1 conserved protein of unknown function compare
PP_4891 -1.3 -2.8 integral membrane ATP-dependent zinc metallopeptidase / HflK-HflC complex compare
PP_2756 -1.3 -1.5 conserved protein of unknown function compare
PP_4981 -1.3 -1.0 polyisoprene-binding protein, acidic stress response factor compare
PP_3989 -1.3 -2.2 DNA-cytosine methyltransferase compare
PP_1692 -1.3 -1.9 conserved protein of unknown function compare
PP_4944 -1.3 -1.9 Carbamoyltransferase compare
PP_2747 -1.3 -1.4 conserved protein of unknown function compare
PP_0643 -1.3 -1.5 protein of unknown function compare
PP_1763 -1.3 -1.2 putative oxidoreductase compare
PP_0194 -1.3 -2.4 Transcriptional regulatory protein AlgP compare
PP_4739 -1.3 -1.0 conserved protein of unknown function compare
PP_0290 -1.3 -3.8 Imidazole glycerol phosphate synthase subunit HisH compare
PP_2306 -1.2 -1.3 conserved exported protein of unknown function compare
PP_1824 -1.2 -1.2 Smr domain protein compare
PP_0852 -1.2 -2.2 Transcriptional regulator, Cro/CI family compare
PP_2976 -1.2 -1.4 putative transposase compare
PP_4121 -1.2 -3.7 NADH-quinone oxidoreductase subunit C/D compare
PP_0127 -1.2 -3.4 Thiol:disulfide interchange protein compare
PP_4018 -1.2 -1.8 Acetyltransferase, GNAT family compare
PP_3105 -1.2 -1.6 conserved membrane protein of unknown function compare
PP_2222 -1.2 -2.1 conserved protein of unknown function compare
PP_0782 -1.2 -2.1 conserved protein of unknown function compare
PP_0914 -1.2 -3.6 GGDEF domain protein compare
PP_1571 -1.2 -1.9 conserved protein of unknown function compare
PP_5654 -1.2 -1.4 putative phosphotriesterase compare
PP_4988 -1.2 -4.2 signal transduction histidine kinase CheA/CheY-like receiver compare
PP_5248 -1.2 -1.2 putative hydrolase compare
PP_0502 -1.1 -2.0 conserved protein of unknown function compare
PP_4069 -1.1 -1.0 conserved protein of unknown function compare
PP_2896 -1.1 -2.4 conserved protein of unknown function compare
PP_0634 -1.1 -2.7 Fimbrial protein compare
PP_5015 -1.1 -1.8 phosphoribosyl-ATP pyrophosphatase (EC 3.6.1.31) (from data) compare
PP_3539 -1.1 -1.3 putative Transcriptional regulator compare
PP_1862 -1.1 -1.9 conserved membrane protein of unknown function compare
PP_4470 -1.1 -1.1 putative transcriptional regulator (Arc domain-containing) compare
PP_0803 -1.1 -3.4 Protein secretion ABC efflux system, membrane fusion protein compare
PP_1381 -1.1 -0.8 4-carboxymuconolactone decarboxylase compare
PP_2060 -1.1 -0.6 DNA-binding transcriptional dual regulator - SoxR-reversible one-electron oxidation of its [2Fe-2S] cluster, NADPH-dependent compare
PP_4820 -1.1 -3.1 tRNA-dihydrouridine synthase B compare
PP_5294 -1.1 -2.8 Ribonuclease PH compare
PP_5216 -1.1 -1.3 exopolyphosphatase compare
PP_5085 -1.1 -2.9 malic enzyme B compare
PP_5217 -1.1 -5.9 Polyphosphate kinase compare
PP_3409 -1.1 -1.6 putative Cobalamin biosynthesis protein cobE compare
PP_2622 -1.1 -2.1 conserved protein of unknown function compare
PP_1044 -1.1 -1.7 Lipoprotein UxpA compare
PP_1609 -1.1 -1.2 conserved protein of unknown function compare
PP_4964 -1.1 -1.8 D-erythrose 4-phosphate dehydrogenase compare
PP_1513 -1.1 -1.2 Ribosomal RNA small subunit methyltransferase J compare
PP_2070 -1.1 -0.9 Transcriptional regulator, AraC family compare
PP_5140 -1.1 -1.1 Transcriptional regulator, MerR family compare
PP_2016 -1.1 -1.7 conserved protein of unknown function compare
PP_5224 -1.1 -1.8 conserved protein of unknown function compare
PP_2895 -1.0 -2.2 conserved protein of unknown function compare
PP_1045 -1.0 -0.9 Type II secretion pathway protein XcpP compare
PP_4690 -1.0 -1.8 Rieske 2Fe-2S family protein compare
PP_0806 -1.0 -7.8 putative Surface adhesion protein compare
PP_0999 -1.0 -1.4 carbamate kinase compare
PP_2175 -1.0 -2.5 putative 3-oxoacyl-(Acyl-carrier-protein) reductase compare
PP_4697 -1.0 -1.8 poly(A) polymerase compare
PP_5014 -1.0 -1.2 Phosphoribosyl-AMP cyclohydrolase compare
PP_3824 -1.0 -1.1 conserved exported protein of unknown function compare
PP_0123 -1.0 -3.8 DNA polymerase I, 5 compare
PP_4074 -1.0 -2.7 conserved protein of unknown function compare
PP_0377 -1.0 -1.2 coenzyme PQQ synthesis protein D compare
PP_1511 -1.0 -1.8 conserved protein of unknown function compare
PP_3866 -1.0 -1.0 conserved protein of unknown function compare
PP_2720 -1.0 -0.8 conserved protein of unknown function compare
PP_5671 -1.0 -2.1 conserved protein of unknown function compare
PP_0425 -1.0 -1.6 conserved protein of unknown function compare
PP_2814 -1.0 -2.7 conserved protein of unknown function compare
PP_3363 -1.0 -1.3 putative thymidylate kinase compare
PP_1255 -1.0 -1.3 putative cis-4-hydroxy-D-proline oxidase compare
PP_5603 -1.0 -2.1 putative FAD dependent oxidoreductase compare
PP_0273 -1.0 -1.7 conserved protein of unknown function compare
PP_4937 -1.0 -2.1 toluene tolerance protein compare
PP_4696 -1.0 -1.7 Nitrogen regulation protein NR(I) compare
PP_1319 -1.0 -1.8 Ubiquinol--cytochrome c reductase, cytochrome c1 compare
PP_4545 -1.0 -1.8 beta-ketodecanoyl-(Acyl-carrier-protein) synthase compare
PP_5507 -1.0 -2.3 protein of unknown function compare


Specific Phenotypes

None in this experiment

For Pseudomonas putida KT2440 in soil experiments

For soil Soil=PNNL_Prosser_PlotA_B_20191220; Sterility=sterile; Collection=outgrowth_in_LB_2hrs_then_extra_outgrowth_in_LB; SoilTreatment=coldshock; SoilTreatmentTime=0_hrs across organisms