Experiment set23IT020 for Pseudomonas putida KT2440

Compare to:

Soil=PNNL_Prosser_PlotA_B_20191220; Sterility=sterile; Collection=outgrowth_in_LB; SoilTreatment=coldshock; SoilTreatmentTime=0_hrs

200 most important genes:

  gene name fitness t score description  
PP_4517 -5.2 -3.6 conserved protein of unknown function compare
PP_0164 -4.7 -3.2 conserved protein of unknown function compare
PP_5000 -3.5 -1.8 peptidase component of the ATP-dependent HslVU protease compare
PP_4943 -3.3 -2.3 putative Glycosyl transferase compare
PP_0760 -3.3 -3.4 conserved membrane protein of unknown function compare
PP_3946 -3.2 -1.9 HTH-type transcriptional repressor NicR compare
PP_0888 -3.0 -2.9 Photosynthetic apparatus regulatory protein RegA compare
PP_5114 -2.8 -2.6 putative adenine methyltransferase compare
PP_5054 -2.7 -2.6 glutaredoxin 3 compare
PP_4262 -2.7 -2.6 Cytochrome oxidase maturation protein, cbb3-type compare
PP_4332 -2.7 -4.5 Chemotaxis protein CheW compare
PP_4936 -2.6 -6.2 O-antigen polymerase compare
PP_5328 -2.6 -1.8 putative phosphate transport system permease protein compare
PP_3821 -2.5 -8.0 UTP-glucose-1-phosphate uridylyltransferase compare
PP_4008 -2.5 -6.8 ATP-dependent serine protease compare
PP_4902 -2.5 -2.6 Oligoribonuclease compare
PP_1898 -2.5 -3.4 MotA/TolQ/ExbB proton channel family protein compare
PP_5185 -2.4 -4.7 acetylglutamate kinase-like protein (regulatory domain)/amino acid N-acetyltransferase compare
PP_1733 -2.4 -1.7 membrane ATPase of the MinC-MinD-MinE system compare
PP_1734 -2.4 -1.7 Probable septum site-determining protein MinC compare
PP_5093 -2.4 -2.0 twitching motility protein compare
PP_5230 -2.4 -3.6 Tyrosine recombinase XerC compare
PP_4098 -2.4 -2.0 UvrABC system protein C compare
PP_4004 -2.3 -3.9 DNA translocase FtsK compare
PP_5289 -2.3 -3.6 Acetylglutamate kinase compare
PP_0846 -2.3 -1.6 DnaK-like molecular chaperone specific for IscU compare
PP_0292 -2.2 -2.8 1-(5-phosphoribosyl)-5-((5-phosphoribosylamino)methylideneamino)imidazole-4-carboxamide isomerase (EC 5.3.1.16) (from data) compare
PP_4546 -2.2 -2.6 ATP-dependent helicase HrpA compare
PP_4296 -2.2 -1.8 conserved exported protein of unknown function compare
PP_5338 -2.2 -3.3 aspartate ammonia-lyase compare
PP_4941 -2.2 -6.3 conserved exported protein of unknown function compare
PP_4944 -2.2 -3.9 Carbamoyltransferase compare
PP_1319 -2.2 -4.4 Ubiquinol--cytochrome c reductase, cytochrome c1 compare
PP_5090 -2.2 -2.5 putative cell division protein compare
PP_4874 -2.2 -1.5 50S ribosomal protein L9 compare
PP_2903 -2.1 -1.9 peptidyl-prolyl cis-trans isomerase B (rotamase B) compare
PP_1994 -2.1 -1.5 tRNA pseudouridine (38-40)synthase compare
PP_0022 -2.1 -1.3 hypothetical protein compare
PP_4938 -2.1 -6.9 putative Glycosyl transferase compare
PP_0872 -2.1 -5.7 Peptide chain release factor 3 compare
PP_4880 -2.0 -7.6 exoribonuclease R compare
PP_2793 -2.0 -2.1 Acyl-CoA dehydrogenase family protein compare
PP_0246 -2.0 -2.4 two-component system DNA-binding response transcriptional dual regulator compare
PP_1088 -2.0 -6.7 Argininosuccinate synthase compare
PP_4532 -2.0 -2.5 ATP-dependent DEAD-box RNA helicase require for 50S ribosomal subunit biogenesis compare
PP_4131 -2.0 -2.3 NADH-quinone oxidoreductase subunit N compare
PP_2907 -2.0 -3.5 DNA-binding response regulator compare
PP_4669 -2.0 -2.7 OmpA family protein compare
PP_4379 -1.9 -3.2 Beta-ketoacyl-acyl-carrier-protein synthase I compare
PP_0184 -1.9 -4.1 Argininosuccinate lyase compare
PP_3999 -1.9 -5.9 Uroporphyrinogen-III C-methyltransferase/Precorrin-2 dehydrogenase/Sirohydrochlorin ferrochelatase compare
PP_1318 -1.9 -4.3 Cytochrome b compare
PP_0949 -1.9 -4.3 putative ATP-binding protein UPF0042 compare
PP_1986 -1.9 -3.1 3-isopropylmalate dehydratase small subunit compare
PP_4993 -1.9 -4.6 Glutathione synthetase compare
PP_0065 -1.8 -2.8 NAD-binding component of TrK potassium transporter compare
PP_2144 -1.8 -3.2 Transcriptional regulator, TetR family compare
PP_4942 -1.8 -2.1 conserved protein of unknown function compare
PP_5217 -1.8 -9.0 Polyphosphate kinase compare
PP_4940 -1.8 -5.1 Putative glycosyltransferase compare
PP_4917 -1.8 -3.7 3',5'-cyclic-nucleotide phosphodiesterase compare
PP_4891 -1.8 -3.8 integral membrane ATP-dependent zinc metallopeptidase / HflK-HflC complex compare
PP_5393 -1.8 -1.7 putative metal-binding chaperone compare
PP_1237 -1.8 -1.7 4-hydroxy-tetrahydrodipicolinate synthase compare
PP_4223 -1.7 -1.7 diaminobutyrate-2-oxoglutarate transaminase compare
PP_2328 -1.7 -3.5 Phosphoadenosine phosphosulfate reductase compare
PP_4696 -1.7 -3.4 Nitrogen regulation protein NR(I) compare
PP_0293 -1.7 -1.8 Imidazole glycerol phosphate synthase subunit HisF compare
PP_4994 -1.7 -3.9 conserved protein of unknown function compare
PP_1428 -1.7 -1.6 Sigma factor AlgU negative regulatory protein compare
PP_0290 -1.7 -4.2 Imidazole glycerol phosphate synthase subunit HisH compare
PP_5110 -1.7 -1.5 cytokinetic ring ABC transporter-like subunit - ATP-binding subunit compare
PP_5310 -1.7 -4.8 junction-specific ATP-dependent DNA helicase compare
PP_4129 -1.7 -2.0 NADH:ubiquinone oxidoreductase, membrane subunit L compare
PP_1778 -1.7 -5.0 Lipopolysaccharide ABC export system, permease protein compare
PP_1783 -1.6 -1.1 dTDP-glucose pyrophosphorylase compare
PP_4797 -1.6 -1.8 conserved protein of unknown function compare
PP_1912 -1.6 -3.5 Phosphate acyltransferase compare
PP_4124 -1.6 -2.4 NADH-quinone oxidoreductase subunit G compare
PP_5028 -1.6 -2.2 proline iminopeptidase compare
PP_1609 -1.6 -1.6 conserved protein of unknown function compare
PP_0435 -1.6 -5.0 Peptidase, M23/M37 family compare
PP_0735 -1.6 -1.8 molybdopterin-synthase adenylyltransferase compare
PP_2203 -1.6 -2.0 conserved protein of unknown function compare
PP_1623 -1.5 -9.0 RNA polymerase, sigma S (sigma 38) factor compare
PP_4130 -1.5 -2.7 NADH:ubiquinone oxidoreductase, membrane subunit M compare
PP_0007 -1.5 -2.2 conserved hypothetical protein compare
PP_1349 -1.5 -4.0 ATP:cob(I)alamin adenosyltransferase compare
PP_4251 -1.5 -2.5 cytochrome c oxidase subunit, cbb3-type compare
PP_2313 -1.5 -2.0 conserved membrane protein of unknown function compare
PP_4785 -1.5 -4.4 conserved exported protein of unknown function compare
PP_2371 -1.5 -3.7 Sulphite reductase hemoprotein, beta subunit compare
PP_2402 -1.5 -1.4 putative Sensor histidine kinase compare
PP_1629 -1.5 -4.0 Protein RecA compare
PP_4058 -1.5 -5.6 1,4-alpha-glucan branching enzyme compare
PP_4342 -1.4 -3.2 flagellar synthesis regulator, putative ATPase compare
PP_1779 -1.4 -3.8 Lipopolysaccharide ABC export system, ATP-binding protein compare
PP_2031 -1.4 -2.4 conserved protein of unknown function compare
PP_2568 -1.4 -1.3 Ring-cleaving dioxygenase compare
PP_4261 -1.4 -2.8 cation-transporting P-type ATPase compare
PP_2611 -1.4 -2.9 membrane protein of unknown function compare
PP_1968 -1.4 -2.8 TetR family transcriptional regulator compare
PP_5652 -1.4 -1.3 conserved protein of unknown function, phage origin compare
PP_2387 -1.4 -2.6 conserved protein of unknown function compare
PP_5055 -1.4 -2.1 Sulfurtransferase compare
PP_1935 -1.4 -1.9 Transcriptional regulator, Cro/CI family compare
PP_2220 -1.4 -3.3 C4-type zinc finger protein, DksA/TraR family compare
PP_4824 -1.4 -4.2 Sensor histidine kinase/response regulator compare
PP_0803 -1.4 -5.5 Protein secretion ABC efflux system, membrane fusion protein compare
PP_0001 -1.3 -1.4 probable chromosome-partitioning protein compare
PP_1493 -1.3 -1.8 chemotaxis response regulator protein-glutamate methylesterase of group 3 operon compare
PP_4964 -1.3 -2.0 D-erythrose 4-phosphate dehydrogenase compare
PP_1217 -1.3 -3.2 Holliday junction ATP-dependent DNA helicase RuvB compare
PP_5658 -1.3 -1.6 protein of unknown function compare
PP_5327 -1.3 -1.8 putative phosphate ABC transporter, permease subunit compare
PP_2145 -1.3 -2.3 beta-N-acetylglucosaminidase compare
PP_t10 -1.3 -1.2 tRNA-Pro compare
PP_0504 -1.3 -3.6 Outer membrane protein OprG compare
PP_4120 -1.3 -1.5 NADH-quinone oxidoreductase subunit B compare
PP_2118 -1.3 -2.1 conserved protein of unknown function compare
PP_4204 -1.3 -2.9 antitoxin of the type II toxin-antitoxin MqsRA system and DNA-binding transcriptional repressor compare
PP_3098 -1.3 -1.1 conserved protein of unknown function compare
PP_5337 -1.3 -3.4 LysR family transcriptional regulator compare
PP_2581 -1.3 -1.5 conserved protein of unknown function compare
PP_5051 -1.3 -2.0 conserved protein of unknown function compare
PP_0804 -1.3 -4.2 Protein secretion ABC efflux system, permease and ATP-binding protein compare
PP_3730 -1.3 -1.3 Transcriptional regulatory protein AruR compare
PP_2409 -1.3 -1.8 cobalt-zinc-cadmium resistance protein compare
PP_5329 -1.3 -1.2 putative phosphate ABC transporter, periplasmic phosphate-binding protein compare
PP_4213 -1.3 -1.5 putative dipeptidase compare
PP_2429 -1.2 -1.5 putative Membrane protein compare
PP_0643 -1.2 -2.3 protein of unknown function compare
PP_0801 -1.2 -1.1 conserved exported protein of unknown function compare
PP_1764 -1.2 -1.7 Phosphoglycolate phosphatase 2 compare
PP_3916 -1.2 -2.2 conserved protein of unknown function compare
PP_5572 -1.2 -2.0 protein of unknown function compare
PP_1075 -1.2 -3.4 glycerol kinase compare
PP_3295 -1.2 -2.1 YeeE/YedE family protein compare
PP_3227 -1.1 -1.8 Transcriptional regulator, LysR family compare
PP_4682 -1.1 -3.1 conserved protein of unknown function containing tetratricopeptide repeat domain compare
PP_2747 -1.1 -1.6 conserved protein of unknown function compare
PP_1054 -1.1 -1.2 Type II secretion pathway protein XcpZ compare
PP_5109 -1.1 -4.0 membrane component of the ABC transporter FtsEX involved in cellular division compare
PP_4726 -1.1 -1.6 Chaperone protein DnaJ compare
PP_5309 -1.1 -2.1 oxidative and nitrosative stress transcriptional dual regulator compare
PP_0484 -1.1 -3.0 transporter of an unknown substrate compare
PP_0345 -1.1 -2.6 putative Heptose kinase WapP compare
PP_3365 -1.1 -1.0 Acetolactate synthase compare
PP_1211 -1.1 -2.8 conserved protein of unknown function compare
PP_1826 -1.1 -1.3 Hydrolase, isochorismatase family compare
PP_2678 -1.1 -3.3 putative Hydrolase compare
PP_0663 -1.1 -3.0 Transcriptional regulator, AsnC family compare
PP_0910 -1.1 -4.8 conserved exported protein of unknown function compare
PP_4263 -1.1 -1.5 putative membrane-bounded cytochrome biogenesis cycZ-like domain, copper tolerance protein compare
PP_4247 -1.1 -1.4 Exonuclease compare
PP_1022 -1.1 -2.1 glucose 6-phosphate-1-dehydrogenase compare
PP_4804 -1.1 -0.7 RlpA-like lipoprotein compare
PP_5001 -1.1 -1.4 protease HslVU, ATPase component compare
PP_0127 -1.1 -2.9 Thiol:disulfide interchange protein compare
PP_2378 -1.1 -1.6 Fe/S biogenesis protein NfuA compare
PP_4892 -1.1 -3.2 integral membrane ATP-dependent zinc metallopeptidase / HflK-HflC complex compare
PP_5350 -1.1 -1.9 Transcriptional regulator, RpiR family compare
PP_0806 -1.1 -8.9 putative Surface adhesion protein compare
PP_2520 -1.1 -2.0 conserved protein of unknown function compare
PP_5303 -1.1 -2.5 aminoacrylate/iminopropionate hydrolase/deaminase compare
PP_0566 -1.1 -0.8 translation-related factor compare
PP_3409 -1.1 -2.0 putative Cobalamin biosynthesis protein cobE compare
PP_0405 -1.1 -4.2 conserved protein of unknown function compare
PP_3978 -1.1 -3.3 conserved protein of unknown function compare
PP_4471 -1.1 -2.9 Magnesium transporter compare
PP_1389 -1.1 -3.6 Oxaloacetate decarboxylase compare
PP_2370 -1.1 -2.0 conserved protein of unknown function compare
PP_2456 -1.1 -2.8 D-ribose ABC transporter - permease subunit compare
PP_4253 -1.1 -1.3 cytochrome c oxidase subunit, cbb3-type compare
PP_2442 -1.0 -1.4 conserved protein of unknown function, DUF480 family compare
PP_0114 -1.0 -2.7 methionine ABC transporter ATP-binding protein compare
PP_2720 -1.0 -1.1 conserved protein of unknown function compare
PP_3014 -1.0 -2.0 conserved exported protein of unknown function compare
PP_5546 -1.0 -1.1 conserved protein of unknown function compare
PP_2441 -1.0 -1.9 conserved protein of unknown function compare
PP_0002 -1.0 -4.3 probable chromosome partition protein compare
PP_4375 -1.0 -3.1 flagellar chaperone, inhibits premature FliC assembly compare
PP_3649 -1.0 -2.5 Transcriptional regulator, GntR family compare
PP_3061 -1.0 -1.6 conserved protein of unknown function compare
PP_1317 -1.0 -2.1 Ubiquinol-cytochrome c reductase iron-sulfur subunit compare
PP_3929 -1.0 -1.8 conserved protein of unknown function compare
PP_2738 -1.0 -2.5 putative Transcriptional regulator compare
PP_0805 -1.0 -4.4 Outer membrane efflux protein compare
PP_0833 -1.0 -0.7 queuine tRNA-ribosyltransferase compare
PP_5095 -1.0 -0.7 pyrroline-5-carboxylate reductase compare
PP_2280 -1.0 -1.3 conserved protein of unknown function compare
PP_2307 -1.0 -2.0 conserved protein of unknown function compare
PP_4910 -1.0 -1.3 conserved protein of unknown function compare
PP_3637 -1.0 -1.1 putative Sulfonate ABC transporter, ATP-binding protein compare
PP_3434 -1.0 -1.8 conserved protein of unknown function compare
PP_3903 -1.0 -1.0 conserved protein of unknown function compare
PP_5489 -1.0 -2.1 conserved protein of unknown function compare
PP_3447 -1.0 -1.1 conserved membrane protein of unknown function compare
PP_2433 -1.0 -1.3 conserved protein of unknown function compare
PP_1397 -1.0 -2.2 conserved protein of unknown function compare


Specific Phenotypes

None in this experiment

For Pseudomonas putida KT2440 in soil experiments

For soil Soil=PNNL_Prosser_PlotA_B_20191220; Sterility=sterile; Collection=outgrowth_in_LB; SoilTreatment=coldshock; SoilTreatmentTime=0_hrs across organisms