Experiment set23IT020 for Pseudomonas putida KT2440

Compare to:

Soil=PNNL_Prosser_PlotA_B_20191220; Sterility=sterile; Collection=outgrowth_in_LB; SoilTreatment=coldshock; SoilTreatmentTime=0_hrs

200 most detrimental genes:

  gene name fitness t score description  
PP_1655 +2.8 7.6 23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD compare
PP_1656 +2.7 10.4 ATP:GTP 3'-pyrophosphotransferase compare
PP_0168 +2.1 19.8 putative surface adhesion protein compare
PP_0167 +2.1 18.5 Toxin secretion ATP-binding protein compare
PP_4519 +2.1 17.3 Agglutination protein compare
PP_0166 +2.0 14.8 HlyD family secretion protein compare
PP_1650 +2.0 11.5 Sensor protein GacS compare
PP_0165 +2.0 15.3 GGDEF domain protein compare
PP_4099 +1.8 9.1 two-componenent system BarA/UvrY - regulatory subunit compare
PP_2530 +1.3 3.9 conserved protein of unknown function compare
PP_1410 +1.3 2.1 conserved protein of unknown function compare
PP_4136 +1.1 1.1 Transcriptional regulator, LuxR family compare
PP_3318 +1.0 2.8 conserved protein of unknown function compare
PP_2256 +1.0 2.2 Transcriptional regulator, Cro/CI family compare
PP_2060 +1.0 1.0 DNA-binding transcriptional dual regulator - SoxR-reversible one-electron oxidation of its [2Fe-2S] cluster, NADPH-dependent compare
PP_0319 +1.0 2.4 conserved protein of unknown function compare
PP_3110 +1.0 1.5 protein of unknown function compare
PP_2231 +1.0 3.7 putative permease of the drug/metabolite transporter (DMT) superfamily compare
PP_5027 +0.9 2.5 D-tyrosyl-tRNA(Tyr) deacylase compare
PP_1825 +0.9 2.7 conserved exported protein of unknown function compare
PP_1999 +0.9 1.2 membrane protein required for colicin V production compare
PP_4254 +0.9 0.8 conserved protein of unknown function compare
PP_1176 +0.9 1.0 conserved protein of unknown function compare
PP_1062 +0.9 2.5 MutT/nudix family protein compare
PP_0874 +0.9 1.2 conserved protein of unknown function compare
PP_0511 +0.8 3.3 putative methyltransferase compare
PP_4354 +0.8 1.5 flagellar export apparatus subunit compare
PP_4660 +0.8 2.7 Transcriptional regulator, LysR family compare
PP_0886 +0.8 3.2 conserved exported protein of unknown function compare
PP_2677 +0.8 2.1 conserved exported protein of unknown function compare
PP_0653 +0.8 1.2 conserved protein of unknown function compare
PP_1632 +0.8 1.0 conserved protein of unknown function compare
PP_3757 +0.8 1.8 Chemotaxis protein CheY compare
PP_0831 +0.8 4.5 hypothetical protein compare
PP_4373 +0.8 5.8 Transcriptional regulator FleQ compare
PP_5625 +0.8 1.7 conserved protein of unknown function compare
PP_5552 +0.8 1.4 conserved protein of unknown function compare
PP_3817 +0.8 2.0 Polyamine ABC transporter, ATP-binding protein compare
PP_4424 +0.8 1.2 Uncharacterized HTH-type transcriptional regulator y4tD compare
PP_1353 +0.8 1.2 conserved membrane protein of unknown function compare
PP_4171 +0.8 5.9 conserved exported protein of unknown function compare
PP_0672 +0.7 5.9 Sensory box protein compare
PP_0425 +0.7 1.6 conserved protein of unknown function compare
PP_5609 +0.7 1.6 conserved protein of unknown function compare
PP_4681 +0.7 2.4 conserved protein of unknown function compare
PP_4073 +0.7 1.5 conserved exported protein of unknown function compare
PP_2857 +0.7 1.8 conserved exported protein of unknown function compare
PP_5211 +0.7 2.4 ChaC-related protein compare
PP_2899 +0.7 1.2 conserved exported protein of unknown function compare
PP_5039 +0.7 1.3 conserved protein of unknown function compare
PP_4957 +0.7 2.2 conserved protein of unknown function compare
PP_2684 +0.7 1.8 conserved membrane protein of unknown function compare
PP_5240 +0.7 1.1 Response regulator compare
PP_1310 +0.7 1.8 conserved hypothetical protein compare
PP_4435 +0.7 3.0 conserved protein of unknown function compare
PP_0948 +0.7 1.3 Phosphocarrier protein HPr compare
PP_2341 +0.7 1.4 6-carboxy-5,6,7,8-tetrahydropterin synthase compare
PP_4196 +0.7 1.5 conserved exported protein of unknown function compare
PP_0512 +0.7 1.0 hypothetical protein compare
PP_2071 +0.7 2.8 conserved protein of unknown function compare
PP_0305 +0.7 1.4 HTH-type transcriptional regulator CdhR compare
PP_1739 +0.7 0.9 conserved membrane protein of unknown function compare
PP_4982 +0.7 1.9 putative cytochrome b561, iron-regulated compare
PP_0855 +0.7 1.4 conserved protein of unknown function compare
PP_2396 +0.7 3.0 conserved exported protein of unknown function compare
PP_0575 +0.7 1.7 conserved membrane protein of unknown function compare
PP_2274 +0.7 2.0 conserved protein of unknown function compare
PP_5604 +0.7 0.7 putative subtilisin-like serine protease compare
PP_0794 +0.6 1.6 1-phosphofructokinase monomer compare
PP_5256 +0.6 2.0 Cyclic nucleotide-binding protein compare
PP_3505 +0.6 1.7 conserved protein of unknown function compare
PP_1662 +0.6 2.2 conserved protein of unknown function compare
PP_4997 +0.6 1.3 pyrimidine operon regulatory protein/uracil phosphoribosyltransferase compare
PP_0377 +0.6 0.5 coenzyme PQQ synthesis protein D compare
PP_1457 +0.6 3.0 Phosphoribosylglycinamide formyltransferase 2 compare
PP_0999 +0.6 1.4 carbamate kinase compare
PP_0921 +0.6 1.4 Transcriptional regulator, ArsR family compare
PP_5488 +0.6 2.7 conserved protein of unknown function compare
PP_3241 +0.6 0.8 conserved exported protein of unknown function compare
PP_0516 +0.6 1.3 3,4-dihydroxy-2-butanone 4-phosphate synthase/GTP cyclohydrolase II compare
PP_4555 +0.6 1.5 conserved protein of unknown function compare
PP_1381 +0.6 0.9 4-carboxymuconolactone decarboxylase compare
PP_5322 +0.6 2.6 putative metal ion transporter compare
PP_1099 +0.6 1.2 Cold shock protein CapB compare
PP_5565 +0.6 2.5 conserved protein of unknown function compare
PP_5100 +0.6 1.2 dITP/XTP pyrophosphatase compare
PP_3829 +0.6 1.7 Molybdenum transport system permease protein ModB compare
PP_5725 +0.6 2.5 protein of unknown function compare
PP_2276 +0.6 3.3 putative phage exonuclease compare
PP_5053 +0.6 2.1 Protein-export protein SecB compare
PP_4394 +0.6 1.5 flagella basal body P-ring formation protein compare
PP_0210 +0.6 1.9 putative Phycobiliprotein compare
PP_3121 +0.6 1.9 transcriptional regulator, LysR family compare
PP_1947 +0.6 2.2 conserved protein of unknown function compare
PP_1528 +0.6 0.9 conserved protein of unknown function compare
PP_0003 +0.6 1.2 16S RNA methyltransferase compare
PP_0781 +0.6 1.5 conserved protein of unknown function compare
PP_0787 +0.6 1.0 quinolinate phosphoribosyltransferase (decarboxylating) monomer compare
PP_3463 +0.6 2.8 phenylacetaldehyde dehydrogenase compare
PP_4845 +0.6 2.2 putative Urea ABC transporter, ATP-binding protein compare
PP_1276 +0.6 1.7 conserved protein of unknown function compare
PP_5732 +0.5 2.9 putative metal-binding protein compare
PP_5SB +0.5 1.2 5S ribosomal RNA compare
PP_0593 +0.5 0.7 putative ribosome-binding factor compare
PP_0406 +0.5 1.2 Nucleotidyltransferase family protein compare
PP_1051 +0.5 1.2 Type II secretion pathway protein XcpV compare
PP_5566 +0.5 1.5 protein of unknown function compare
PP_0197 +0.5 1.4 conserved protein of unknown function compare
PP_2401 +0.5 1.7 conserved membrane protein of unknown function compare
PP_0841 +0.5 1.0 DNA-binding transcriptional dual regulator 2Fe-2S cluster IscR compare
PP_5491 +0.5 1.2 conserved protein of unknown function with SEC-C motif domain compare
PP_2537 +0.5 1.7 conserved protein of unknown function compare
PP_2067 +0.5 1.6 putative EmrB/QacA family drug resistance transporter compare
PP_3385 +0.5 2.9 conserved protein of unknown function compare
PP_5429 +0.5 1.6 protein of unknown function compare
PP_2503 +0.5 1.1 putative 3-oxoacyl-(Acyl-carrier-protein) reductase compare
PP_3618 +0.5 1.4 conserved protein of unknown function compare
PP_3825 +0.5 1.8 conserved protein of unknown function compare
PP_0750 +0.5 1.5 conserved protein of unknown function compare
PP_1190 +0.5 1.4 conserved protein of unknown function compare
PP_5558 +0.5 1.8 putative transcriptional xre family of phage origin compare
PP_1439 +0.5 1.2 conserved exported protein of unknown function compare
PP_0859 +0.5 2.1 putative ketoglutaramate omega-amidase compare
PP_4768 +0.5 1.4 Exonuclease compare
PP_3230 +0.5 2.2 Phosphoribosyl transferase domain protein compare
PP_5098 +0.5 2.5 methionine biosynthesis protein MetW compare
PP_4540 +0.5 2.1 Hydrolase, alpha/beta fold family compare
PP_1552 +0.5 1.7 putative Phage replication protein compare
PP_2105 +0.5 1.4 conserved protein of unknown function compare
PP_2462 +0.5 1.0 conserved protein of unknown function compare
PP_4391 +0.5 1.6 flagellar basal-body rod protein FlgB compare
PP_5017 +0.5 0.7 Sec-independent protein translocase protein TatB compare
PP_0616 +0.5 1.3 Branched-chain amino acid ABC transporter, ATP binding protein compare
PP_3392 +0.5 1.2 conserved protein of unknown function compare
PP_5605 +0.5 2.7 conserved exported protein of unknown function compare
PP_4199 +0.5 0.6 putative Lipoprotein compare
PP_1922 +0.5 1.2 conserved protein of unknown function compare
PP_4528 +0.5 1.0 conserved protein of unknown function compare
PP_3407 +0.5 0.9 conserved protein of unknown function compare
PP_3804 +0.5 1.9 conserved exported protein of unknown function compare
PP_1515 +0.5 2.4 Transcriptional regulator, tetR family compare
PP_4504 +0.5 0.5 conserved exported protein of unknown function compare
PP_5670 +0.5 1.6 conserved protein of unknown function compare
PP_1207 +0.5 1.6 conserved protein of unknown function compare
PP_0048 +0.5 0.8 conserved protein of unknown function compare
PP_3547 +0.5 2.6 putative NAD(P)-binding oxidoreductase with NAD(P)-binding Rossmann-fold domain compare
PP_4769 +0.5 1.2 conserved protein of unknown function compare
PP_5023 +0.5 2.3 Amino acid ABC transporter, permease protein compare
PP_3156 +0.5 1.5 Universal stress protein family compare
PP_2159 +0.5 1.2 Copper-binding protein, plastocyanin/azurin family compare
PP_4237 +0.5 1.9 periplasmic protein disulfide isomerase compare
PP_2916 +0.5 2.0 riboflavin synthase compare
PP_4353 +0.5 1.5 Flagellar biosynthetic protein fliR compare
PP_5500 +0.5 1.3 protein of unknown function compare
PP_1647 +0.5 1.1 conserved protein of unknown function compare
PP_1679 +0.5 1.0 Nicotinate-nucleotide--dimethylbenzimidazole phosphoribosyltransferase compare
PP_1841 +0.5 1.8 Cytochrome c family protein compare
PP_4581 +0.5 0.8 putative amidotransferase compare
PP_5699 +0.5 1.4 putative iron uptake protein compare
PP_2896 +0.5 1.3 conserved protein of unknown function compare
PP_2547 +0.5 1.6 Transcriptional regulator, LysR family compare
PP_5451 +0.5 1.4 protein of unknown function compare
PP_2714 +0.5 2.0 Sensor histidine kinase compare
PP_5241 +0.5 0.7 DNA-binding response regulator, LuxR family compare
PP_1167 +0.5 1.2 D-glucuronate / D-galacturonate TRAP transporter, large permease component (from data) compare
PP_3346 +0.5 1.1 Nickel transporter ATP-binding protein compare
PP_0632 +0.5 1.9 leader peptidase/N-methyltransferase compare
PP_0202 +0.5 2.2 CBS domain-containing protein compare
PP_5021 +0.5 2.2 Methyl-accepting chemotaxis transducer compare
PP_1104 +0.5 1.9 AotO-related protein compare
PP_3894 +0.5 2.0 putative Phage replication protein O compare
PP_2257 +0.5 2.2 putative aerotaxis receptor compare
PP_3836 +0.5 2.4 conserved protein of unknown function compare
PP_1344 +0.5 0.6 conserved protein of unknown function compare
PP_4999 +0.5 0.2 dihydroorotase-like protein compare
PP_2171 +0.5 1.1 Transporter, LysE family compare
PP_4402 +0.5 2.5 branched-chain alpha-keto acid dehydrogenase complex, beta subunit compare
PP_0152 +0.5 0.6 conserved exported protein of unknown function compare
PP_1269 +0.5 0.7 Universal stress protein family compare
PP_1479 +0.5 1.3 HicB protein compare
PP_2661 +0.5 1.4 conserved protein of unknown function compare
PP_3617 +0.5 1.6 conserved membrane protein of unknown function compare
PP_5471 +0.5 0.5 putative response regulator receiver protein compare
PP_2075 +0.5 1.8 conserved membrane protein of unknown function compare
PP_2798 +0.4 1.6 putative Oxidoreductase compare
PP_0556 +0.4 0.9 Acetoin catabolism protein compare
PP_4584 +0.4 1.8 putative endonuclease compare
PP_2306 +0.4 0.7 conserved exported protein of unknown function compare
PP_2183 +0.4 1.3 putative Formate dehydrogenase, gamma subunit compare
PP_0685 +0.4 1.1 conserved protein of unknown function compare
PP_2342 +0.4 1.3 conserved protein of unknown function compare
PP_3175 +0.4 1.8 putative Dioxygenase, ferredoxin reductase component compare
PP_1873 +0.4 1.2 Peptide methionine sulfoxide reductase MsrB compare
PP_1218 +0.4 1.0 putative acyl-CoA thioesterase compare
PP_1895 +0.4 2.0 putative ABC transporter - ATP binding subunit compare
PP_3438 +0.4 1.4 conserved membrane protein of unknown function compare
PP_2740 +0.4 0.8 Transcriptional regulator, MerR family compare
PP_4616 +0.4 1.5 conserved protein of unknown function compare
PP_1478 +0.4 1.5 putative Xenobiotic reductase compare
PP_4156 +0.4 0.8 Transcriptional regulator, LysR family compare


Specific Phenotypes

None in this experiment

For Pseudomonas putida KT2440 in soil experiments

For soil Soil=PNNL_Prosser_PlotA_B_20191220; Sterility=sterile; Collection=outgrowth_in_LB; SoilTreatment=coldshock; SoilTreatmentTime=0_hrs across organisms