Experiment set23IT019 for Pseudomonas simiae WCS417

Compare to:

R2A control with 0.2% methanol

200 most important genes:

  gene name fitness t score description  
PS417_06375 -3.5 -1.5 deoxycytidine triphosphate deaminase compare
PS417_24800 -2.5 -7.8 UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl- meso-diaminopimelate ligase compare
PS417_27795 -1.9 -0.8 orotate phosphoribosyltransferase compare
PS417_27195 -1.9 -2.0 N-acetylglutamate synthase compare
PS417_00475 -1.8 -6.5 membrane protein compare
PS417_26990 -1.7 -1.3 RNA pyrophosphohydrolase compare
PS417_04365 -1.6 -1.8 3-deoxy-D-manno-octulosonate 8-phosphate phosphatase compare
PS417_22060 -1.6 -2.4 hypothetical protein compare
PS417_22520 -1.5 -2.2 histidine kinase compare
PS417_20125 -1.4 -4.6 phosphoribosylglycinamide formyltransferase compare
PS417_20160 -1.4 -3.7 cysteine synthase compare
PS417_01605 -1.4 -1.2 phosphoglycerate mutase compare
PS417_21480 -1.3 -1.6 23S rRNA pseudouridylate synthase compare
PS417_06540 -1.3 -1.5 membrane protein compare
PS417_16490 -1.3 -1.6 cell division protein FtsK compare
PS417_16555 -1.2 -1.0 cupin compare
PS417_26420 -1.2 -1.9 hypothetical protein compare
PS417_16180 -1.1 -4.1 MFS transporter compare
PS417_13455 -1.1 -2.3 alkaline proteinase inhibitor compare
PS417_17795 -1.1 -2.1 ABC transporter permease compare
PS417_20985 -1.0 -0.6 porin compare
PS417_07170 -0.9 -2.6 hypothetical protein compare
PS417_24500 -0.9 -2.8 DEAD/DEAH box helicase compare
PS417_22690 -0.9 -2.4 phosphogluconate dehydratase compare
PS417_15915 -0.9 -1.6 hypothetical protein compare
PS417_04585 -0.9 -1.0 hypothetical protein compare
PS417_05830 -0.9 -2.5 hypothetical protein compare
PS417_05160 -0.9 -1.0 DNA polymerase III subunit chi compare
PS417_00220 -0.9 -1.4 hypothetical protein compare
PS417_23770 -0.9 -1.1 exodeoxyribonuclease V subunit alpha compare
PS417_10715 -0.9 -2.8 Cro/Cl family transcriptional regulator compare
PS417_06710 -0.9 -1.4 beta-ketoadipyl CoA thiolase compare
PS417_01915 -0.8 -0.5 ATP-dependent protease ATP-binding subunit HslU compare
PS417_11945 -0.8 -0.8 hypothetical protein compare
PS417_02475 -0.8 -1.6 N-acetylmuramoyl-L-alanine amidase compare
PS417_27040 -0.8 -1.8 3-phosphoglycerate dehydrogenase compare
PS417_00180 -0.8 -1.8 tryptophan synthase subunit alpha compare
PS417_04960 -0.8 -1.8 hypothetical protein compare
PS417_07305 -0.8 -1.3 3-beta hydroxysteroid dehydrogenase compare
PS417_16885 -0.8 -2.2 hypothetical protein compare
PS417_03300 -0.8 -1.7 alanine acetyltransferase compare
PS417_18755 -0.8 -1.9 CrtK compare
PS417_06025 -0.8 -2.4 alpha/beta hydrolase compare
PS417_26335 -0.7 -1.4 BetI family transcriptional regulator compare
PS417_17590 -0.7 -1.1 ABC transporter substrate-binding protein compare
PS417_13445 -0.7 -1.6 D-aminopeptidase compare
PS417_28070 -0.7 -4.9 phosphate ABC transporter ATP-binding protein compare
PS417_00535 -0.7 -2.4 Holliday junction resolvase compare
PS417_07540 -0.7 -1.7 multifunctional fatty acid oxidation complex subunit alpha compare
PS417_17705 -0.7 -1.9 LacI family transcriptional regulator compare
PS417_17470 -0.7 -2.1 LuxR family transcriptional regulator compare
PS417_04385 -0.7 -1.6 organic solvent ABC transporter substrate-binding protein compare
PS417_19835 -0.7 -1.4 flagellar biosynthesis protein FliS compare
PS417_15480 -0.7 -1.6 ABC transporter substrate-binding protein compare
PS417_09010 -0.7 -1.7 phosphohistidine phosphatase compare
PS417_23950 -0.7 -0.7 polynucleotide phosphorylase/polyadenylase compare
PS417_06865 -0.7 -2.1 transporter compare
PS417_25290 -0.7 -1.5 hypothetical protein compare
PS417_27915 -0.7 -2.5 type VI secretion system protein ImpM compare
PS417_20915 -0.7 -2.2 hypothetical protein compare
PS417_06370 -0.7 -0.8 cold-shock protein compare
PS417_28275 -0.6 -2.0 cobalamin biosynthesis protein CobW compare
PS417_18060 -0.6 -1.9 general secretion pathway protein GspJ compare
PS417_08540 -0.6 -1.7 RNA helicase compare
PS417_24745 -0.6 -1.4 gamma-glutamyl phosphate reductase compare
PS417_04230 -0.6 -2.3 lipoprotein compare
PS417_10060 -0.6 -1.3 hypothetical protein compare
PS417_06530 -0.6 -1.3 membrane protein compare
PS417_21360 -0.6 -1.0 termination factor Rho compare
PS417_13645 -0.6 -2.1 ABC transporter compare
PS417_17755 -0.6 -1.9 hypothetical protein compare
PS417_14580 -0.6 -3.1 saccharopine dehydrogenase compare
PS417_28080 -0.6 -5.1 phosphate ABC transporter permease compare
PS417_10685 -0.6 -2.4 acyl-CoA dehydrogenase compare
PS417_07620 -0.6 -1.1 beta-hexosaminidase compare
PS417_28515 -0.6 -1.3 16S rRNA methyltransferase compare
PS417_28340 -0.6 -0.9 hypothetical protein compare
PS417_08545 -0.6 -1.2 aromatic ring-opening dioxygenase LigB compare
PS417_11520 -0.6 -2.6 Sorbitol dehydrogenase (EC 1.1.1.14) (from data) compare
PS417_23170 -0.6 -1.4 FeS assembly protein IscX compare
PS417_08410 -0.6 -1.5 hypothetical protein compare
PS417_10535 -0.6 -2.5 hypothetical protein compare
PS417_03525 -0.6 -1.3 hypothetical protein compare
PS417_06040 -0.6 -2.0 hypothetical protein compare
PS417_27705 -0.6 -1.0 amino acid dehydrogenase compare
PS417_22495 -0.6 -2.7 histidine triad (HIT) protein compare
PS417_01715 -0.6 -1.1 hypothetical protein compare
PS417_22810 -0.6 -1.5 DNA base-flipping protein YbaZ compare
PS417_21760 -0.6 -1.3 hypothetical protein compare
PS417_27035 -0.6 -1.3 FAD-linked oxidase compare
PS417_12035 -0.6 -0.9 dihydroxyacetone kinase compare
PS417_18845 -0.6 -2.2 peptidase compare
PS417_01995 -0.6 -1.3 hypothetical protein compare
PS417_26985 -0.6 -3.7 phosphoenolpyruvate-protein phosphotransferase compare
PS417_24165 -0.6 -2.0 hypothetical protein compare
PS417_23765 -0.6 -2.1 hypothetical protein compare
PS417_06680 -0.6 -3.0 nuclease PIN compare
PS417_21710 -0.6 -1.8 Succinylornithine transaminase (EC 2.6.1.81) (from data) compare
PS417_09595 -0.6 -1.8 membrane protein compare
PS417_12870 -0.6 -1.3 enoyl-CoA hydratase compare
PS417_23725 -0.5 -1.2 methylmalonate-semialdehyde dehydrogenase compare
PS417_23160 -0.5 -1.2 50S rRNA methyltransferase compare
PS417_08365 -0.5 -0.9 hypothetical protein compare
PS417_11755 -0.5 -2.1 diacetyl reductase compare
PS417_10025 -0.5 -1.2 bacteriophage lambda NinG family protein compare
PS417_11705 -0.5 -3.2 cyclic peptide transporter compare
PS417_08350 -0.5 -1.4 preprotein translocase subunit TatD compare
PS417_09470 -0.5 -1.0 hypothetical protein compare
PS417_15975 -0.5 -0.6 glutamate carboxypeptidase compare
PS417_05985 -0.5 -1.4 chemotaxis protein CheY compare
PS417_06845 -0.5 -1.0 lipoprotein compare
PS417_06145 -0.5 -0.8 hypothetical protein compare
PS417_00380 -0.5 -1.1 zinc ABC transporter ATP-binding protein compare
PS417_27300 -0.5 -0.6 cell division protein ZapA compare
PS417_27085 -0.5 -1.9 AraC family transcriptional regulator compare
PS417_24710 -0.5 -3.0 lipoprotein compare
PS417_24085 -0.5 -1.5 protein RnfH compare
PS417_05535 -0.5 -0.9 Fis family transcriptional regulator compare
PS417_21995 -0.5 -1.9 hypothetical protein compare
PS417_27075 -0.5 -1.2 thiol-disulfide isomerase compare
PS417_20855 -0.5 -0.6 hypothetical protein compare
PS417_09600 -0.5 -2.4 glycosyl transferase family 1 compare
PS417_26125 -0.5 -1.8 glutathione S-transferase compare
PS417_18910 -0.5 -2.0 acetylornithine deacetylase compare
PS417_11475 -0.5 -1.9 membrane protein compare
PS417_07405 -0.5 -2.1 hypothetical protein compare
PS417_10265 -0.5 -1.2 peptidase compare
PS417_07240 -0.5 -1.5 Transcriptional regulator of deoxyribose catabolism (from data) compare
PS417_11350 -0.5 -1.9 biopolymer transporter ExbB compare
PS417_22815 -0.5 -3.0 permease compare
PS417_27315 -0.5 -0.8 hypothetical protein compare
PS417_03045 -0.5 -1.2 hypothetical protein compare
PS417_27940 -0.5 -1.2 type VI secretion protein compare
PS417_05100 -0.5 -1.2 RNA polymerase sigma factor compare
PS417_18080 -0.5 -1.5 general secretion pathway protein GspF compare
PS417_23380 -0.5 -1.4 cytochrome o ubiquinol oxidase subunit III compare
PS417_16035 -0.5 -2.6 ABC transporter substrate-binding protein compare
PS417_16535 -0.5 -1.7 NUDIX hydrolase compare
PS417_14855 -0.5 -1.9 gluconolactonase compare
PS417_23205 -0.5 -2.3 transcriptional regulator compare
PS417_14985 -0.5 -1.6 Fe-S protein compare
PS417_03915 -0.5 -1.5 tRNA-Thr compare
PS417_11615 -0.5 -1.0 urea ABC transporter ATP-binding protein compare
PS417_26060 -0.5 -1.6 DNA polymerase III subunit epsilon compare
PS417_07165 -0.5 -1.4 dihydrodipicolinate synthase compare
PS417_00975 -0.5 -0.7 hypothetical protein compare
PS417_03560 -0.5 -0.7 GTP-binding protein compare
PS417_10480 -0.5 -0.8 glutathione S-transferase compare
PS417_05125 -0.5 -2.2 sugar ABC transporter substrate-binding protein compare
PS417_19125 -0.5 -1.8 LysR family transcriptional regulator compare
PS417_04225 -0.5 -1.3 conjugal transfer protein TraR compare
PS417_23600 -0.5 -2.7 RpiR family transcriptional regulator compare
PS417_02270 -0.5 -2.0 carbamoyltransferase compare
PS417_04170 -0.4 -2.3 stringent starvation protein A compare
PS417_28390 -0.4 -1.9 CDP-alcohol phosphatidyltransferase compare
PS417_24355 -0.4 -1.2 MFS transporter compare
PS417_25310 -0.4 -1.4 hypothetical protein compare
PS417_14950 -0.4 -1.6 structural protein MipA compare
PS417_11540 -0.4 -2.1 NAD synthetase compare
PS417_12740 -0.4 -1.7 secretion protein HlyD compare
PS417_02415 -0.4 -1.3 phosphoserine phosphatase compare
PS417_03315 -0.4 -2.0 hypothetical protein compare
PS417_21430 -0.4 -0.9 3-oxoacyl-ACP synthase compare
PS417_03490 -0.4 -2.2 type III secretion system protein SsaR compare
PS417_16030 -0.4 -3.1 sulfurtransferase compare
PS417_14065 -0.4 -2.7 UTP--glucose-1-phosphate uridylyltransferase compare
PS417_19720 -0.4 -1.0 DNA-binding protein compare
PS417_23915 -0.4 -1.7 pantoate--beta-alanine ligase compare
PS417_18915 -0.4 -1.0 hypothetical protein compare
PS417_07630 -0.4 -2.2 hypothetical protein compare
PS417_08155 -0.4 -0.6 integration host factor subunit beta compare
PS417_04935 -0.4 -1.0 hypothetical protein compare
PS417_12635 -0.4 -1.0 alkanesulfonate monooxygenase compare
PS417_03815 -0.4 -1.3 DNA transporter compare
PS417_21870 -0.4 -1.3 glycerophosphodiester phosphodiesterase compare
PS417_23025 -0.4 -2.0 murein transglycosylase compare
PS417_15710 -0.4 -0.8 nitrate reductase compare
PS417_10445 -0.4 -1.7 LysR family transcriptional regulator compare
PS417_22380 -0.4 -2.1 hypothetical protein compare
PS417_15815 -0.4 -1.9 hydrolase compare
PS417_21535 -0.4 -2.1 chemotaxis protein CheY compare
PS417_17780 -0.4 -0.7 Ais protein compare
PS417_05010 -0.4 -0.8 IclR family transcriptional regulator compare
PS417_12840 -0.4 -1.2 TetR family transcriptional regulator compare
PS417_13800 -0.4 -1.4 4-deoxy-4-formamido-L-arabinose-phospho-UDP deformylase compare
PS417_22620 -0.4 -1.7 pyruvate kinase compare
PS417_16350 -0.4 -2.1 competence protein ComEC compare
PS417_27210 -0.4 -2.5 AsnC family transcriptional regulator compare
PS417_15090 -0.4 -0.6 hypothetical protein compare
PS417_17400 -0.4 -1.8 TetR family transcriptional regulator compare
PS417_15535 -0.4 -1.4 oxidoreductase compare
PS417_09200 -0.4 -1.8 ABC transporter compare
PS417_16120 -0.4 -2.0 transcriptional regulator compare
PS417_23570 -0.4 -1.4 hypothetical protein compare
PS417_04705 -0.4 -0.5 hypothetical protein compare
PS417_10300 -0.4 -1.8 protease compare
PS417_08320 -0.4 -0.9 metal-chelation protein CHAD compare
PS417_24200 -0.4 -2.3 GCN5 family acetyltransferase compare
PS417_09590 -0.4 -1.9 membrane protein compare
PS417_03260 -0.4 -0.6 5S ribosomal RNA compare


Specific Phenotypes

None in this experiment

For Pseudomonas simiae WCS417 in r2a control with 0.2% methanol experiments

For r2a control with 0.2% methanol Methanol across organisms